lispstat.asd

   1 ;;  -*- mode: lisp -*-
   2 ;;; Time-stamp: <2009-07-14 13:20:23 tony>
   3 ;;; Created:    <2005-05-30 17:09:47 blindglobe>
   4 ;;; File:       lispstat.asd
   5 ;;; Author:     AJ Rossini <blindglobe@gmail.com>
   6 ;;; Copyright:  (c) 2005--2008, by AJ Rossini <blindglobe@gmail.com>
   7 ;;; License:    BSD, see the top level directory file LICENSE for details.
   8 ;;; Purpose:    ASDF packaging for CommonLisp Stat
   9
  10 ;;; What is this talk of 'release'? Klingons do not make software
  11 ;;; 'releases'.  Our software 'escapes', leaving a bloody trail of
  12 ;;; designers and quality assurance people in its wake.
  13
  14 (in-package :cl-user)
  15
  16 (defpackage :lisp-stat-config
  17   (:use :common-lisp)
  18   (:export *default-path*
  19            *lsos-files* *basic-files* *ls-files*
  20            *lispstat-home-dir*
  21            *lispstat-data-dir* *lispstat-examples-dir*))
  22
  23 (in-package :lisp-stat-config)
  24
  25 (defparameter *lispstat-home-dir*
  26   (directory-namestring
  27    (truename (asdf:system-definition-pathname :lispstat)))
  28   "Value considered \"home\" for our data")
  29
  30 (macrolet ((ls-dir (root-str)
  31              `(pathname (concatenate 'string
  32                                      (namestring *lispstat-home-dir*) ,root-str)))
  33
  34            (ls-defdir (target-dir-var  root-str)
  35              `(defvar ,target-dir-var (ls-dir ,root-str))))
  36
  37   ;; reminder of testing
  38   ;;(macroexpand '(ls-defdir *lispstat-asdf-dir* "ASDF"))
  39   ;;(macroexpand-1 '(ls-defdir *lispstat-asdf-dir* "ASDF"))
  40   ;;(macroexpand-1 '(ls-dir "ASDF"))
  41
  42   (ls-defdir *lispstat-asdf-dir* "ASDF/")
  43   (ls-defdir *lispstat-data-dir* "Data/")
  44   (ls-defdir *lispstat-external-dir* "external/")
  45 )
  46
  47 ;;(pushnew *lispstat-asdf-dir* asdf:*central-registry*)
  48
  49
  50 ;; (pushnew #p"C:/Lisp/libs/" asdf-util:*source-dirs* :test #'equal) ; eg for Microsoft
  51
  52 ;;; back to our regularly scheduled work...
  53 ;;; We should not need these, I think, but?
  54 ;; (asdf:oos 'asdf:compile-op :cffi)            ;; FFI
  55 ;; (asdf:oos 'asdf:compile-op :lift)            ;; Unit Testing
  56 ;; (asdf:oos 'asdf:load-op :cffi)            ;; FFI
  57 ;; (asdf:oos 'asdf:load-op :lift)            ;; Unit Testing
  58
  59 ;;; MAJOR HACK, FIXME!
  60 ;;(load "/media/disk/Desktop/sandbox/matlisp.git/start.lisp")
  61
  62 (in-package :cl-user)
  63
  64 (defpackage #:lispstat-system
  65     (:use :common-lisp :asdf))
  66
  67 (in-package #:lispstat-system)
  68
  69 ;;; To avoid renaming everything from *.lsp to *.lisp...
  70 ;;; borrowed from Cyrus Harmon's work, for example for the ch-util.
  71 ;;; NOT secure against serving multiple architectures/hardwares from
  72 ;;; the same file system (i.e. PPC and x86 would not be
  73 ;;; differentiated).
  74
  75 (defclass lispstat-lsp-source-file (cl-source-file) ())
  76 (defparameter *fasl-directory*
  77    (make-pathname :directory '(:relative
  78                                #+sbcl "sbcl-fasl"
  79                                #+openmcl "openmcl-fasl"
  80                                #+cmu "cmucl-fasl"
  81                                #+clisp "clisp-fasl"
  82                                #-(or sbcl openmcl clisp cmucl) "fasl"
  83                                )))
  84
  85
  86 ;;; Handle Luke's *.lsp suffix
  87 (defmethod source-file-type ((c lispstat-lsp-source-file) (s module)) "lsp")
  88 (defmethod asdf::output-files :around ((operation compile-op)
  89                                        (c lispstat-lsp-source-file))
  90   (list (merge-pathnames *fasl-directory*
  91                          (compile-file-pathname (component-pathname c)))))
  92 ;;; again, thanks to Cyrus for saving me time...
  93
  94
  95 (defsystem "lispstat"
  96   :version #.(with-open-file
  97                  (vers (merge-pathnames "version.lisp-expr" *load-truename*))
  98                (read vers))
  99   :author "A.J. Rossini <blindglobe@gmail.com>"
 100   :license "BSD"
 101   :description "Common Lisp Statistics (CLS): A System for Statistical
 102   Computing with Common Lisp; based on CLS alpha1 by Luke Tierney
 103   <luke@stat.uiowa.edu> (apparently originally written when Luke was
 104   at CMU, on leave at Bell Labs?).  Last touched by him in 1991, then
 105   by AJR in 2005--2009."
 106   :serial t
 107   :depends-on (:cffi
 108                :xarray
 109                :lisp-matrix
 110                :lift
 111                :rsm-string
 112                ;;    :cl-cairo2  :cl-2d
 113                )
 114   :components ((:static-file "version" :pathname #p"version.lisp-expr")
 115                (:static-file "LICENSE")
 116                (:static-file "README")
 117
 118                ;; reading in DSV files for data access
 119 #|
 120                (:module
 121                 "csv-data"
 122                 :pathname "src/data/"
 123                 :components
 124                 ((:file "test-cybertiggyr")
 125                  (:file "dsv-cybertiggyr" :depends-on ( "test-cybertiggyr"))))
 126 |#
 127                (:module
 128                 "packaging"
 129                 :pathname #p"src/"
 130                 ;; :depends-on ("csv-data")
 131                 :components
 132                 ((:file "packages")))
 133
 134                (:module
 135                 "proto-objects"
 136                 :pathname "src/objsys/"
 137                 :serial t
 138                 :depends-on ("packaging")
 139                 :components
 140                 ((:lispstat-lsp-source-file "lsobjects")))
 141
 142                (:module "lispstat-core"
 143                         :pathname "src/basics/"
 144                         :serial t
 145                         :depends-on ("packaging" "proto-objects")
 146                         :components
 147                         (; (:lispstat-lsp-source-file "defsys")
 148                          (:lispstat-lsp-source-file "lstypes")
 149                          (:lispstat-lsp-source-file "lsfloat")
 150
 151                          (:lispstat-lsp-source-file "compound")
 152                          (:lispstat-lsp-source-file "lsmacros"
 153                                                     :depends-on ("compound"))
 154
 155                          (:lispstat-lsp-source-file "lsmath"
 156                                                     :depends-on ("compound"
 157                                                                  "lsmacros"
 158                                                                  "lsfloat"))))
 159
 160                (:module
 161                 "numerics-internal"
 162                 :pathname "src/numerics/"
 163                 :depends-on ("packaging" "proto-objects" "lispstat-core")
 164                 :components
 165                 ((:lispstat-lsp-source-file "cffiglue")
 166                  (:lispstat-lsp-source-file "dists"
 167                                             :depends-on ("cffiglue"))
 168 #|
 169                  (:lispstat-lsp-source-file "matrices"
 170                                             :depends-on ("cffiglue"))
 171                  (:lispstat-lsp-source-file "ladata"
 172                                             :depends-on ("cffiglue"
 173                                                          "matrices"))
 174                  (:file "linalg"
 175                         :depends-on ("cffiglue"
 176                                      "matrices"
 177                                      "ladata"))
 178 |#
 179                  ))
 180
 181
 182                ;; prototype and CLOS approaches.
 183                (:module
 184                 "stat-data"
 185                 :pathname "src/data/"
 186                 :depends-on ("packaging"
 187                              "proto-objects"
 188                              "lispstat-core"
 189                              "numerics-internal")
 190                 :components
 191                 ((:file "dataframe")
 192                  (:file "data")
 193                  (:file "listoflist")))
 194
 195                (:module
 196                 "lispstat-basics"
 197                 :pathname "src/basics/"
 198                 :depends-on ("packaging"
 199                              "proto-objects"
 200                              "lispstat-core"
 201                              "numerics-internal"
 202                              "stat-data")
 203                 :components
 204                 ((:lispstat-lsp-source-file "lsbasics")))
 205
 206
 207
 208                (:module
 209                 "descriptives"
 210                 :pathname "src/describe/"
 211                 :depends-on ("packaging"
 212                              "proto-objects"
 213                              "lispstat-core"
 214                              "numerics-internal"
 215                              "stat-data"
 216                              "lispstat-basics")
 217                 :components
 218                 ((:lispstat-lsp-source-file "statistics")))
 219 #|
 220                (:module
 221                 "visualize"
 222                 :pathname "src/visualize/"
 223                 :depends-on ("lispstat-core")
 224                 :components
 225                 ((:file "plot")))
 226 |#
 227                (:module
 228                 "optimization"
 229                 :pathname "src/numerics/"
 230                 :depends-on ("packaging"
 231                              "proto-objects"
 232                              "lispstat-core"
 233                              "numerics-internal"
 234                              "stat-data"
 235                              "lispstat-basics")
 236                 :components
 237                 ((:file "optimize")))
 238
 239
 240                ;; Applications
 241                (:module
 242                 "stat-models"
 243                 :pathname "src/stat-models/"
 244                 :depends-on ("packaging"
 245                              "proto-objects"
 246                              "lispstat-core"
 247                              "numerics-internal"
 248                              "lispstat-basics"
 249                              "descriptives"
 250                              "optimization")
 251                 :components
 252                 ((:file "regression")
 253                  ;; (:lispstat-lsp-source-file "nonlin"
 254                  ;;       :depends-on ("regression"))
 255                  ;; (:lispstat-lsp-source-file "bayes"
 256                  ;;       :depends-on ("regression"))
 257                  ))
 258
 259                ;; Applications
 260                (:module
 261                 "example-data"
 262                 :pathname "Data/"
 263                 :depends-on ("packaging"
 264                              "proto-objects"
 265                              "lispstat-core"
 266                              "numerics-internal"
 267                              "lispstat-basics"
 268                              "descriptives"
 269                              "optimization")
 270                 :components
 271                 ((:file "examples")
 272                  (:lispstat-lsp-source-file "absorbtion")
 273                  (:lispstat-lsp-source-file "diabetes")
 274                  (:lispstat-lsp-source-file "leukemia")
 275                  (:lispstat-lsp-source-file "randu")
 276                  (:lispstat-lsp-source-file "aircraft")
 277                  (:lispstat-lsp-source-file "metabolism")
 278                  (:lispstat-lsp-source-file "book")
 279                  (:lispstat-lsp-source-file "heating")
 280                  (:lispstat-lsp-source-file "oxygen")
 281                  (:lispstat-lsp-source-file "stackloss")
 282                  (:lispstat-lsp-source-file "car-prices")
 283                  (:lispstat-lsp-source-file "iris")
 284                  (:lispstat-lsp-source-file "puromycin")
 285                  (:lispstat-lsp-source-file "tutorial")))
 286
 287                (:module
 288                  "lisp-stat-unittest"
 289                 :depends-on  ("packaging" "proto-objects"
 290                               "lispstat-core"
 291                               "numerics-internal"
 292                               "stat-data"
 293                               "lispstat-basics"
 294                               "descriptives"
 295                               "optimization"
 296                               "stat-models"
 297                               "example-data")
 298                  :pathname "src/unittests/"
 299                  :components ((:file "unittests")
 300                               (:file "unittests-lstypes" :depends-on ("unittests"))
 301                               (:file "unittests-specfn" :depends-on ("unittests"))
 302                               (:file "unittests-prob" :depends-on ("unittests"))
 303                               (:file "unittests-proto" :depends-on ("unittests"))
 304                               (:file "unittests-regression" :depends-on ("unittests"))
 305                               (:file "unittests-listoflist" :depends-on ("unittests"))
 306                               (:file "unittests-arrays" :depends-on ("unittests"))
 307                               (:file "unittests-dataframe" :depends-on ("unittests"))))))