lispstat.asd

   1 ;;  -*- mode: lisp -*-
   2 ;;; Time-stamp: <2009-01-07 17:42:26 tony>
   3 ;;; Created:    <2005-05-30 17:09:47 blindglobe>
   4 ;;; File:       lispstat.asd
   5 ;;; Author:     AJ Rossini <blindglobe@gmail.com>
   6 ;;; Copyright:  (c) 2005--2008, by AJ Rossini <blindglobe@gmail.com>
   7 ;;; License:    BSD, see the top level directory file LICENSE for details.
   8 ;;; Purpose:    ASDF packaging for CommonLisp Stat
   9
  10 ;;; What is this talk of 'release'? Klingons do not make software
  11 ;;; 'releases'.  Our software 'escapes', leaving a bloody trail of
  12 ;;; designers and quality assurance people in its wake.
  13
  14 (in-package :cl-user)
  15
  16 (defpackage :lisp-stat-config
  17   (:use :common-lisp)
  18   (:export *default-path*
  19            *lsos-files* *basic-files* *ls-files*
  20            *lispstat-home-dir*
  21            *lispstat-data-dir* *lispstat-examples-dir*))
  22
  23 (in-package :lisp-stat-config)
  24
  25 (defparameter *lispstat-home-dir*
  26   (directory-namestring
  27    (truename (asdf:system-definition-pathname :lispstat)))
  28   "Value considered \"home\" for our data")
  29
  30 #|
  31   (setf *lispstat-home-dir*
  32       (directory-namestring (truename (asdf:system-definition-pathname
  33                                        :lispstat))))
  34 |#
  35
  36 (macrolet ((ls-dir (root-str)
  37              `(pathname (concatenate 'string
  38                                      (namestring *lispstat-home-dir*) ,root-str)))
  39
  40            (ls-defdir (target-dir-var  root-str)
  41              `(defvar ,target-dir-var (ls-dir ,root-str))))
  42
  43   ;; reminder of testing
  44   ;;(macroexpand '(ls-defdir *lispstat-asdf-dir* "ASDF"))
  45   ;;(macroexpand-1 '(ls-defdir *lispstat-asdf-dir* "ASDF"))
  46   ;;(macroexpand-1 '(ls-dir "ASDF"))
  47
  48   (ls-defdir *lispstat-asdf-dir* "ASDF/")
  49   (ls-defdir *lispstat-data-dir* "Data/")
  50   (ls-defdir *lispstat-external-dir* "external/")
  51 )
  52
  53 (pushnew *lispstat-asdf-dir* asdf:*central-registry*)
  54 ;; (pushnew #p"C:/Lisp/libs/" asdf-util:*source-dirs* :test #'equal) ; eg for Microsoft
  55
  56 ;;; back to our regularly scheduled work...
  57 ;;; We should not need these, I think, but?
  58 ;; (asdf:oos 'asdf:compile-op :cffi)            ;; FFI
  59 ;; (asdf:oos 'asdf:compile-op :lift)            ;; Unit Testing
  60 ;; (asdf:oos 'asdf:load-op :cffi)            ;; FFI
  61 ;; (asdf:oos 'asdf:load-op :lift)            ;; Unit Testing
  62
  63 ;;; MAJOR HACK, FIXME!
  64 ;;(load "/media/disk/Desktop/sandbox/matlisp.git/start.lisp")
  65
  66 (in-package :cl-user)
  67
  68 (defpackage #:lispstat-system
  69     (:use :common-lisp :asdf))
  70
  71 (in-package #:lispstat-system)
  72
  73 ;;; To avoid renaming everything from *.lsp to *.lisp...
  74 ;;; borrowed from Cyrus Harmon's work, for example for the ch-util.
  75 ;;; NOT secure against serving multiple architectures/hardwares from
  76 ;;; the same file system (i.e. PPC and x86 would not be
  77 ;;; differentiated).
  78
  79 (defclass lispstat-lsp-source-file (cl-source-file) ())
  80 (defparameter *fasl-directory*
  81    (make-pathname :directory '(:relative
  82                                #+sbcl "sbcl-fasl"
  83                                #+openmcl "openmcl-fasl"
  84                                #+cmu "cmucl-fasl"
  85                                #+clisp "clisp-fasl"
  86                                #-(or sbcl openmcl clisp cmucl) "fasl"
  87                                )))
  88
  89
  90 ;;; Handle Luke's *.lsp suffix
  91 (defmethod source-file-type ((c lispstat-lsp-source-file) (s module)) "lsp")
  92 (defmethod asdf::output-files :around ((operation compile-op)
  93                                        (c lispstat-lsp-source-file))
  94   (list (merge-pathnames *fasl-directory*
  95                          (compile-file-pathname (component-pathname c)))))
  96 ;;; again, thanks to Cyrus for saving me time...
  97
  98
  99 (defsystem "lispstat"
 100   :version #.(with-open-file
 101                  (vers (merge-pathnames "version.lisp-expr" *load-truename*))
 102                (read vers))
 103   :author "A.J. Rossini <blindglobe@gmail.com>"
 104   :license "BSD"
 105   :description "CommonLispStat (CLS): A System for Statistical
 106   Computing with Common Lisp; based on CLS alpha1 by Luke Tierney
 107   <luke@stat.uiowa.edu> (apparently originally written when Luke was
 108   at CMU, on leave somewhere?).   Last touched by him in 1991, then in
 109   2005--2009."
 110   :serial t
 111   :depends-on (:cffi :lisp-matrix :lift)
 112   :components ((:static-file "version" :pathname #p"version.lisp-expr")
 113                (:static-file "LICENSE")
 114                (:static-file "README")
 115
 116                (:module "packaging"
 117                         :pathname #p"src/"
 118                         :components
 119                         ((:file "packages")))
 120
 121                (:module "proto-objects"
 122                         :pathname "src/objsys/"
 123                         :serial t
 124                         :depends-on ("packaging")
 125                         :components
 126                         ((:lispstat-lsp-source-file "lsobjects")))
 127
 128                (:module "lispstat-core"
 129                         :pathname "src/basics/"
 130                         :serial t
 131                         :depends-on ("packaging" "proto-objects")
 132                         :components
 133                         (; (:lispstat-lsp-source-file "defsys")
 134                          (:lispstat-lsp-source-file "lstypes")
 135                          (:lispstat-lsp-source-file "lsfloat")
 136
 137                          (:lispstat-lsp-source-file "compound")
 138                          (:lispstat-lsp-source-file "lsmacros"
 139                                                     :depends-on ("compound"))
 140
 141                          (:lispstat-lsp-source-file "lsmath"
 142                                                     :depends-on ("compound"
 143                                                                  "lsmacros"
 144                                                                  "lsfloat"))))
 145
 146                (:module
 147                 "numerics-internal"
 148                 :pathname "src/numerics/"
 149                 :depends-on ("packaging" "proto-objects" "lispstat-core")
 150                 :components
 151                 ((:lispstat-lsp-source-file "cffiglue")
 152                  (:lispstat-lsp-source-file "dists"
 153                                             :depends-on ("cffiglue"))
 154 #|
 155                  (:lispstat-lsp-source-file "matrices"
 156                                             :depends-on ("cffiglue"))
 157                  (:lispstat-lsp-source-file "ladata"
 158                                             :depends-on ("cffiglue"
 159                                                          "matrices"))
 160                  (:file "linalg"
 161                         :depends-on ("cffiglue"
 162                                      "matrices"
 163                                      "ladata"))
 164 |#
 165                  ))
 166
 167                ;; reading in DSV files for data access
 168                (:module
 169                 "csv-data"
 170                 :pathname "src/data/"
 171                 :components
 172                 ((:file "test-cybertiggyr")
 173                  (:file "dsv-cybertiggyr" :depends-on ( "test-cybertiggyr"))))
 174
 175                ;; prototype and CLOS approaches.
 176                (:module
 177                 "stat-data"
 178                 :pathname "src/data/"
 179                 :depends-on ("packaging"
 180                              "proto-objects"
 181                              "lispstat-core"
 182                              "numerics-internal")
 183                 :components
 184                 ((:file "data-clos")
 185                  (:file "data")))
 186
 187                (:module
 188                 "lispstat-basics"
 189                 :pathname "src/basics/"
 190                 :depends-on ("packaging"
 191                              "proto-objects"
 192                              "lispstat-core"
 193                              "numerics-internal"
 194                              "stat-data")
 195                 :components
 196                 ((:lispstat-lsp-source-file "lsbasics")))
 197
 198
 199
 200                (:module
 201                 "descriptives"
 202                 :pathname "src/describe/"
 203                 :depends-on ("packaging"
 204                              "proto-objects"
 205                              "lispstat-core"
 206                              "numerics-internal"
 207                              "stat-data"
 208                              "lispstat-basics")
 209                 :components
 210                 ((:lispstat-lsp-source-file "statistics")))
 211
 212                (:module
 213                 "optimization"
 214                 :pathname "src/numerics/"
 215                 :depends-on ("packaging"
 216                              "proto-objects"
 217                              "lispstat-core"
 218                              "numerics-internal"
 219                              "stat-data"
 220                              "lispstat-basics")
 221                 :components
 222                 ((:file "optimize")))
 223
 224
 225                ;; Applications
 226                (:module
 227                 "stat-models"
 228                 :pathname "src/stat-models/"
 229                 :depends-on ("packaging"
 230                              "proto-objects"
 231                              "lispstat-core"
 232                              "numerics-internal"
 233                              "lispstat-basics"
 234                              "descriptives"
 235                              "optimization")
 236                 :components
 237                 ((:file "regression")
 238                  ;; (:lispstat-lsp-source-file "nonlin"
 239                  ;;       :depends-on ("regression"))
 240                  ;; (:lispstat-lsp-source-file "bayes"
 241                  ;;       :depends-on ("regression"))
 242                  ))
 243
 244                ;; Applications
 245                (:module
 246                 "example-data"
 247                 :pathname "Data/"
 248                 :depends-on ("packaging"
 249                              "proto-objects"
 250                              "lispstat-core"
 251                              "numerics-internal"
 252                              "lispstat-basics"
 253                              "descriptives"
 254                              "optimization")
 255                 :components
 256                 ((:file "examples")
 257                  (:lispstat-lsp-source-file "absorbtion")
 258                  (:lispstat-lsp-source-file "diabetes")
 259                  (:lispstat-lsp-source-file "leukemia")
 260                  (:lispstat-lsp-source-file "randu")
 261                  (:lispstat-lsp-source-file "aircraft")
 262                  (:lispstat-lsp-source-file "metabolism")
 263                  (:lispstat-lsp-source-file "book")
 264                  (:lispstat-lsp-source-file "heating")
 265                  (:lispstat-lsp-source-file "oxygen")
 266                  (:lispstat-lsp-source-file "stackloss")
 267                  (:lispstat-lsp-source-file "car-prices")
 268                  (:lispstat-lsp-source-file "iris")
 269                  (:lispstat-lsp-source-file "puromycin")
 270                  (:lispstat-lsp-source-file "tutorial")))
 271
 272                (:module
 273                  "lisp-stat-unittest"
 274                 :depends-on  ("packaging" "proto-objects"
 275                               "lispstat-core"
 276                               "numerics-internal"
 277                               "stat-data"
 278                               "lispstat-basics"
 279                               "descriptives"
 280                               "optimization"
 281                               "stat-models"
 282                               "example-data")
 283                  :pathname "src/unittests/"
 284                  :components ((:file "unittests")
 285                               (:file "unittests-lstypes" :depends-on ("unittests"))
 286                               (:file "unittests-specfn" :depends-on ("unittests"))
 287                               (:file "unittests-prob" :depends-on ("unittests"))
 288                               (:file "unittests-proto" :depends-on ("unittests"))
 289                               (:file "unittests-regression" :depends-on ("unittests"))
 290                               ;; not ready yet:
 291                               ;; (:file "unittests-data-clos" :depends-on ("unittests"))
 292                               ;; changing linear algebra system
 293                               ;; (:file "unittests-arrays" :depends-on ("unittests"))
 294                               ))))