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d2::trans_multi: Add --mi option (useful for debugging multi-alignment
2008-06-01
David H
i
lvert
d2::
t
r
a
n
s_multi:
Add --m
i
option (
u
seful for debugging
.
.
.
commit
|
commitdiff
|
tree
2008-05-31
D
a
vid Hilvert
d2::align: Make --lod-preferred=-3 d
e
fault
.
commit
|
commitdiff
|
tree
2008-05-31
David Hilvert
Resolve c
o
mpila
t
ion issues
.
commit
|
commitdiff
|
tree
2008-05-31
David H
i
lver
t
d2
:
:align::
_
align(): Don't cast log
2
(perturb) to unsigned
.
.
.
commit
|
commitdiff
|
tree
2008-05-31
David Hilv
e
rt
d
2
::ali
g
n::_align_
e
lem
e
nt(
)
: D
o
n'
t
cast log2(perturb
.
.
.
commit
|
commitdiff
|
tree
2008-05-31
David Hi
l
vert
d2::a
l
ign::
_
align_ele
m
ent(
)
: Scale adj_p for
r
etaine
d
.
.
.
commit
|
commitdiff
|
tree
2008-05-31
D
av
i
d Hilv
e
rt
d2::align::_align_elem
e
n
t()
:
reduce
l
od acc
o
rding to
.
.
.
commit
|
commitdiff
|
tree
2008-05-30
D
a
vid
H
ilvert
d2::align
:
:_
a
lign(): Use correct
v
a
r
iab
l
es
.
commit
|
commitdiff
|
tree
2008-05-30
David Hilvert
d2::al
i
gn::_
a
lig
n
():
I
n
itialize steps from lod
,
not
.
.
.
commit
|
commitdiff
|
tree
2008-05-30
David Hilvert
d2::align::_ali
g
n
(
)
: Initi
a
lize adj_p
f
rom lod, n
o
t
.
.
.
commit
|
commitdiff
|
tree
2008-05-30
D
a
vid Hilvert
d2::align::_align():
A
djust level-of-detail to ac
c
ommodat
e
.
.
.
commit
|
commitdiff
|
tree
2008-05-30
Da
v
id
H
i
l
v
e
r
t
d2::align::_align()
:
Replace instance
s
of
lod_preferred
.
.
.
commit
|
commitdiff
|
tree
2008-05-29
David Hi
l
v
ert
d2::alig
n
::
_
align: B
e
gin implementation of mi
n
-dimension
.
.
.
commit
|
commitdiff
|
tree
2008-05-28
D
a
v
id
Hi
l
vert
d
2::al
i
gn: Add new
o
ptions --lo
d
-prefer
r
ed and --min
.
.
.
commit
|
commitdiff
|
tree
2008-05-26
David Hilv
e
rt
d2::
a
lign:
:
_align(): Announce alignment steps
f
o
r each
.
.
.
commit
|
commitdiff
|
tree
2008-05-25
David Hilvert
t
e
stsu
i
te/al
e
.
01/align
.
exp: Revise for
c
urrent scr
i
p
t
.
.
.
commit
|
commitdiff
|
tree
2008-05-25
David Hilvert
ale: Reco
g
nize
a
n
d
skip
--trans-{load,save} argum
e
nts
.
.
.
commit
|
commitdiff
|
tree
2008-05-25
David Hil
v
ert
ui/ui
.
h
:
Attempted fix
f
or
D
ebian
bu
g
#
482765 for sparc
.
.
.
commit
|
commitdiff
|
tree
2008-05-24
David Hilvert
ui::ui_log:
Add o
u
tput
for s
c
ale
c
luster referen
c
e
.
.
.
commit
|
commitdiff
|
tree
2008-05-19
David Hilvert
Fi
x
c
o
mpilation errors
.
commit
|
commitdiff
|
tree
2008-05-14
David Hilvert
d2::r
e
nd
e
r::ipc: Inco
r
porate local tonal multiplier
.
.
.
commit
|
commitdiff
|
tree
2008-05-14
Da
v
id
H
ilv
e
rt
d2::ren
d
er::ipc: Us
e
l
o
ca
l
tonal multipli
e
rs for
simulat
i
ng
.
.
.
commit
|
commitdiff
|
tree
2008-05-14
David Hilvert
d2::trans_*: Add a
m
e
t
hod for obta
i
n
ing a tona
l
multiplier
.
.
.
commit
|
commitdiff
|
tree
2008-05-13
Davi
d
Hilver
t
d2::rend
e
r::incr
e
menta
l
: Adjust p
r
ev_value and value
.
.
.
commit
|
commitdiff
|
tree
2008-05-05
David
Hilvert
d2::t
r
ans_multi::se
t
_mu
l
ti: Use
c
orrect
s
e
nse
f
or the
.
.
.
commit
|
commitdiff
|
tree
2008-05-05
D
a
vid Hilvert
d2:
:
align::run::sampl
e
: Account for tonal
registration
.
.
.
commit
|
commitdiff
|
tree
2008-05-05
D
avid Hilvert
d2::align:
:
set_ex
p
osu
r
e_rati
o
(): Add
missing
reference
.
.
.
commit
|
commitdiff
|
tree
2008-05-05
Da
v
id Hilvert
d2::align: Str
e
ngthen conditions
o
n tonal registration
.
.
.
commit
|
commitdiff
|
tree
2008-05-05
D
avid Hilvert
d2::tra
n
s_multi:
U
se
cu
r
rent
_
e
lement by defa
u
l
t when
.
.
.
commit
|
commitdiff
|
tree
2008-05-05
Dav
i
d Hi
l
vert
d2::
a
lign:
Add
code for calculating tonal reg
s
i
t
ration
.
.
.
commit
|
commitdiff
|
tree
2008-05-02
Davi
d
Hilvert
d2::trans_m
u
lti, d2:
:
align: encaps
u
l
a
te bou
n
ds scaling
.
.
.
commit
|
commitdiff
|
tree
2008-05-02
Da
v
id Hilvert
d2::
t
rans_multi:
:
se
t
_multi()
:
m
o
dify
s
patio
-
el
e
mental
.
.
.
commit
|
commitdiff
|
tree
2008-05-02
Dav
i
d Hilvert
d2:
:
t
r
ans_*:
A
dd cod
e
fo
r
assigning,
storing, and retrievin
g
.
.
.
commit
|
commitdiff
|
tree
2008-04-27
David Hilvert
u
i::help::align: Match
p
arent
h
e
s
e
s
.
commit
|
commitdiff
|
tree
2008-04-27
David
H
i
l
v
e
rt
Set --ma-cer
t
default
0
.
01
.
commit
|
commitdiff
|
tree
2008-04-26
David Hilvert
d
2
::align::_align():
Limit
s
kip
p
ing of the a
l
ign
m
ent
.
.
.
commit
|
commitdiff
|
tree
2008-04-26
David Hilve
r
t
d
2
::align: Add method ma_cert_satisfied(), and u
s
e
.
.
.
commit
|
commitdiff
|
tree
2008-04-24
David Hilv
e
rt
d2::align: A
d
d
a
sta
t
ic variable f
o
r multi-alignm
e
nt
.
.
.
commit
|
commitdiff
|
tree
2008-04-23
Davi
d
Hilvert
ale: Co
u
nt threads
when ALE_C
O
UNT_THREADS=1
.
commit
|
commitdiff
|
tree
2008-04-22
D
av
i
d Hilvert
ui/
h
elp
.
h: A
d
d docu
m
entat
i
on
f
or an -
-
ma-cert option
.
.
.
commit
|
commitdiff
|
tree
2008-04-14
D
avid Hilvert
doc/web: Update for 0
.
9
.
0
.
commit
|
commitdiff
|
tree
2008-04-14
David Hilvert
Ma
k
e --md 1
0
0 defa
u
lt
.
commit
|
commitdiff
|
tree
2008-04-14
David Hilvert
d
oc: up
d
at
e
s fo
r
0
.
9
.
0
.
commit
|
commitdiff
|
tree
2008-04-12
David Hilv
e
rt
doc
/
web
:
Pl
a
ce examples section more visib
l
y
.
commit
|
commitdiff
|
tree
2008-04-12
Davi
d
Hilv
e
r
t
doc/web: Re
v
ise d
i
st
r
i
bution status sect
i
on
.
commit
|
commitdiff
|
tree
2008-04-12
David H
i
lvert
doc/web: A
d
d
example
section
cr
e
dit
.
commit
|
commitdiff
|
tree
2008-04-12
David Hilvert
d
oc
/
web: Use repo
.
or
.
c
z
t
e
r
mi
n
ology for the summary
.
.
.
commit
|
commitdiff
|
tree
2008-04-11
David Hi
l
vert
u
i:
M
odify a
l
ignment s
t
a
t
us up
d
ate t
o
reduce the
number
.
.
.
commit
|
commitdiff
|
tree
2008-04-11
David
Hilve
r
t
d2::align
:
Perform post-matching u
s
i
n
g trans_multi
.
.
.
commit
|
commitdiff
|
tree
2008-04-10
David Hilvert
d2::ali
g
n
:
En
s
ur
e
t
h
at the is_
d
ef
a
ult array is
correctl
y
.
.
.
commit
|
commitdiff
|
tree
2008-04-10
D
avid
H
ilvert
d2::tfile::tl
o
ad_nex
t
(): Correct co
u
nt check for a
.
.
.
commit
|
commitdiff
|
tree
2008-04-10
David Hilvert
d2:
:
file::tl
o
ad_
n
ext(): Add code to automati
c
ally skip
.
.
.
commit
|
commitdiff
|
tree
2008-04-10
Da
v
id
H
i
lvert
d2::tfile: Ad
d
multi-coordinate ind
i
ces to the tail
.
.
.
commit
|
commitdiff
|
tree
2008-04-10
Dav
i
d Hilvert
Disable m
u
lti-a
l
ignment
f
or --md 0
.
commit
|
commitdiff
|
tree
2008-04-10
David
H
ilvert
d2::a
l
ign::astate_t:
provide for chan
g
e
s
in the size
.
.
.
commit
|
commitdiff
|
tree
2008-04-09
David Hilvert
d2::a
l
ign: Updat
e
fol
l
owing to fix s
e
man
t
i
cs a
n
d to
.
.
.
commit
|
commitdiff
|
tree
2008-04-04
David
Hilve
r
t
doc/web/
i
ndex:
Make d
i
stribution descriptions more
.
.
.
commit
|
commitdiff
|
tree
2008-04-04
David Hi
l
vert
doc/
w
eb/i
n
dex: A
d
d section for distribution status
.
commit
|
commitdiff
|
tree
2008-03-28
David Hilvert
doc/w
e
b
/index
.
txt
:
Add 'GUI' section with an entry
.
.
.
commit
|
commitdiff
|
tree
2008-03-26
David Hilv
e
r
t
d
2::ali
g
n
::_align
_
element: M
o
ve UI output code in
t
h
e
.
.
.
commit
|
commitdiff
|
tree
2008-03-24
David Hi
l
vert
d2::
t
rans_abstract::bd: Remove
f
ailin
g
as
s
ertion
.
commit
|
commitdiff
|
tree
2008-03-24
D
avid Hil
v
e
rt
d2::trans_
m
ulti: Fix bugs in spatio
-
e
l
e
m
ental
map ass
i
gnment
.
commit
|
commitdiff
|
tree
2008-03-23
David Hilvert
d2::trans_multi: Add support for al
i
gnment in the case
.
.
.
commit
|
commitdiff
|
tree
2008-03-22
David H
i
l
v
ert
d2::align: Set transformation defaults and rescale
.
.
.
commit
|
commitdiff
|
tree
2008-03-22
David Hilvert
doc/w
e
b/index/Exampl
e
s: Add a link
t
o Gregory
M
axwell
.
.
.
commit
|
commitdiff
|
tree
2008-03-21
David H
i
lvert
ui_log: Fix typo
.
commit
|
commitdiff
|
tree
2008-03-21
David Hilvert
w
e
b/index: Upd
a
te
'
I
mage Galleries'
to the
m
ore generic
.
.
.
commit
|
commitdiff
|
tree
2008-03-21
D
a
vid Hilv
e
rt
ui_l
o
g: Add me
t
hod s
t
art_multi_al
i
gnmen
t
_
e
l
ement()
.
.
.
commit
|
commitdiff
|
tree
2008-03-20
David Hilver
t
u
i
::ui_log: D
o
n't record ent
i
re multi-alig
n
ment st
r
uctures
.
.
.
commit
|
commitdiff
|
tree
2008-03-19
D
avid
H
ilvert
do
c
/web/manuals/index
.
txt:
Encod
e
ma
n
uals page as Asc
i
iDoc
.
commit
|
commitdiff
|
tree
2008-03-18
David Hilvert
doc/web/footer-html
.
txt: Lea
v
e
more padding abo
v
e f
o
oter
.
commit
|
commitdiff
|
tree
2008-03-17
D
avid Hilvert
ui::ui_tty
:
Du
r
ing alignment, start a new line when
.
.
.
commit
|
commitdiff
|
tree
2008-03-17
David Hilvert
d2::align: Remo
v
e certa
i
n
d
ebugg
i
n
g output
.
commit
|
commitdiff
|
tree
2008-03-17
David Hilvert
Document a met
h
od for dis
a
bling --thresh
o
l
d
, and disable
.
.
.
commit
|
commitdiff
|
tree
2008-03-17
Dav
i
d Hilvert
doc: Update Asci
i
Doc HTML foo
t
er for 'with
o
ut any
w
arranty
.
.
.
commit
|
commitdiff
|
tree
2008-03-17
David
Hilvert
doc
:
Rev
i
s
e front-page example file
.
commit
|
commitdiff
|
tree
2008-03-17
Davi
d
H
ilvert
d
o
c: Add an asciidoc generator scr
i
pt and examp
l
e
f
iles
.
.
.
commit
|
commitdiff
|
tree
2008-03-13
D
a
vid
H
ilve
r
t
d
2
::a
l
ign::_align: Don't set the zeroth element ali
g
nment
.
.
.
commit
|
commitdiff
|
tree
2008-03-12
David Hilv
e
rt
Occasionally write multi-
a
l
i
gnent structures i
n
ful
l
.
.
.
commit
|
commitdiff
|
tree
2008-03-09
David Hil
v
e
r
t
d2::a
l
ign::_a
l
ig
n
: Resc
a
le
m
ulti-alignment
t
ransfo
r
mation
.
.
.
commit
|
commitdiff
|
tree
2008-03-09
D
av
i
d Hi
l
vert
d
2::align: Fu
r
ther updates
for
migration to si
n
gle
.
.
.
commit
|
commitdiff
|
tree
2008-03-06
David
H
i
lvert
d2
:
:align:
Begin migra
t
ion to using single-transformatio
n
.
.
.
commit
|
commitdiff
|
tree
2008-02-14
David Hilv
e
r
t
d2::
a
lign:
Set original bounds before aligning the
.
.
.
commit
|
commitdiff
|
tree
2008-02-14
Davi
d
Hilvert
d2::align: Implement fu
r
the
r
changes for mu
l
ti-alignment
.
commit
|
commitdiff
|
tree
2008-02-13
Dav
i
d H
i
lvert
d2::align
:
Further modif
i
c
atio
n
s for m
u
lti-a
l
ig
n
m
e
nt
.
commit
|
commitdiff
|
tree
2008-02-13
David Hilvert
Be
g
in m
o
dificati
o
n
of d2::align for multi-align
m
ent
.
commit
|
commitdiff
|
tree
2008-02-13
Davi
d
Hilve
r
t
Resolve
compiler warnings
.
commit
|
commitdiff
|
tree
2008-02-13
D
a
vid Hil
v
ert
d
2::trans_
m
ul
t
i: I
m
p
l
e
ment mu
l
ti-alignment
pe() and
.
.
.
commit
|
commitdiff
|
tree
2008-02-13
D
a
v
id Hilver
t
d
2::trans_multi:
:
use_m
u
lti: Check coordinate against
.
.
.
commit
|
commitdiff
|
tree
2008-02-12
David
Hi
l
vert
d2::trans_multi: Fix
compilati
o
n bugs
.
commit
|
commitdiff
|
tree
2008-02-12
David Hilvert
d2
:
:tran
s
_multi:
:
u
s
e_multi
:
Add code
to generate spat
i
o
.
.
.
commit
|
commitdiff
|
tree
2008-02-12
David
H
ilvert
d
2::tran
s
_m
u
lti::set_curr
e
nt_bounds
:
Change loop for
.
.
.
commit
|
commitdiff
|
tree
2008-02-12
D
a
vid H
i
lvert
d
2
::trans_multi: Mod
i
fy certai
n
unsigned in
t
to in
d
ex_
t
.
commit
|
commitdiff
|
tree
2008-02-02
David Hilver
t
d
2::trans
_
mult
i
:
Change t
h
e sort order
o
n the el
e
m
e
nt
.
.
.
commit
|
commitdiff
|
tree
2008-02-01
David H
i
lvert
d
2::trans_multi: clea
n
-
u
p edit
.
commit
|
commitdiff
|
tree
2008-01-31
David Hilvert
Re
s
olve
c
om
p
il
a
tion failures
.
commit
|
commitdiff
|
tree
2008-01-29
David Hilvert
d2::
t
rans
_
m
u
lti:
Continue implementa
t
ion of th
e
fixed
.
.
.
commit
|
commitdiff
|
tree
2008-01-27
D
a
vid Hilvert
d2::tr
a
ns_multi: Chang
e
offset storage to poi
n
t da
t
a
.
.
.
commit
|
commitdiff
|
tree
2008-01-27
David Hi
l
vert
d
2
::tr
a
ns_multi:
Add
storage
f
or
o
ffset va
l
ues
.
commit
|
commitdiff
|
tree
2008-01-26
D
a
vi
d
H
i
lvert
F
ix compilat
i
o
n
fa
i
lures arising from th
e
privatizati
o
n
.
.
.
commit
|
commitdiff
|
tree
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