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ui: Indicate when no local alignment details are available.
2007-04-15
David H
i
lvert
u
i
: Ind
i
ca
t
e w
h
en no local ali
g
nm
e
nt details are
avail
a
ble
.
commit
|
commitdiff
|
tree
2007-04-14
David Hilvert
d2::trans_multi
:
:specific_rescale(): Add an assert
.
.
.
commit
|
commitdiff
|
tree
2007-04-13
Davi
d
Hilvert
Begin implementing d
2
::ali
g
n::cal
c
u
l
ate_element_region()
.
commit
|
commitdiff
|
tree
2007-04-13
David Hilvert
d2
:
:al
i
g
n::_al
i
gn
(
)
:
Add
c
o
de to st
o
r
e
to and ret
r
ieve
.
.
.
commit
|
commitdiff
|
tree
2007-04-09
D
avi
d
Hilvert
Add code to
re
c
alc
u
late
each non-trivial non-primar
y
.
.
.
commit
|
commitdiff
|
tree
2007-04-09
David Hilvert
Add local_ax_count to the
l
ist of parameters
t
aken
.
.
.
commit
|
commitdiff
|
tree
2007-04-09
David Hi
l
v
ert
Ch
a
nge barrel d
i
storti
o
n mu
l
tiplier and rate
of change
.
.
.
commit
|
commitdiff
|
tree
2007-04-08
David Hilver
t
Add me
t
hods d2::
a
lign
:
:make_element_
n
ontriv
i
al(), d2
.
.
.
commit
|
commitdiff
|
tree
2007-04-03
David Hilv
e
rt
d2:
:
align:
:
follow():
R
evert loop
i
ng over old_* e
l
ement
.
.
.
commit
|
commitdiff
|
tree
2007-04-03
Dav
i
d
Hilvert
d2::align::follow(): Update el
e
ment ind
i
ces
o
f all
.
.
.
commit
|
commitdiff
|
tree
2007-04-03
Davi
d
Hilve
r
t
d
2
:
:tfile: Bugfix in
h
andling of non-pri
m
a
r
y elements
.
commit
|
commitdiff
|
tree
2007-04-03
Davi
d
Hilvert
Copyright notice upd
a
tes
.
commit
|
commitdiff
|
tree
2007-04-03
David
Hil
v
ert
Add c
o
de for loading
a
n
d
savi
n
g non-
p
rimary alignmen
t
.
.
.
commit
|
commitdiff
|
tree
2007-04-03
Dav
i
d Hilver
t
Update changelog
.
commit
|
commitdiff
|
tree
2007-04-03
D
a
vid Hilvert
ui: Modify match for
m
at strings to
p
r
ovide
con
s
tant
.
.
.
commit
|
commitdiff
|
tree
2007-04-03
David Hilv
e
rt
ui_tty
:
Add field wi
d
th a
n
d precisi
o
n specifie
r
s to
.
.
.
commit
|
commitdiff
|
tree
2007-04-03
David Hilvert
Swap argume
n
ts to
alignment
st
a
tu
s
so
that frequent
.
.
.
commit
|
commitdiff
|
tree
2007-04-03
David Hilve
r
t
ui
_
tty: Chang
e
float
i
ng point formats from %f to %g
.
.
.
commit
|
commitdiff
|
tree
2007-04-03
D
avid H
i
lve
r
t
d2
:
:alig
n
: Move following
logic from _a
l
ign() to a
.
.
.
commit
|
commitdiff
|
tree
2007-04-02
David Hilvert
Update ch
a
n
g
elog
commit
|
commitdiff
|
tree
2007-04-02
D
avid Hilvert
Remove file 'sgauss
.
h' missin
g
f
rom sgauss patch, as
.
.
.
commit
|
commitdiff
|
tree
2007-04-02
David
H
i
lve
r
t
Add missing fi
l
e from earlie
r
sgauss
p
atch
.
Will
b
e
.
.
.
commit
|
commitdiff
|
tree
2007-04-02
Da
v
i
d Hil
v
ert
Upd
a
te changelog
commit
|
commitdiff
|
tree
2007-04-02
David Hilv
e
rt
Update changelog
commit
|
commitdiff
|
tree
2007-04-02
David Hil
v
e
rt
Move the multi-trans
f
ormat
i
on element swi
t
ching loop
.
.
.
commit
|
commitdiff
|
tree
2007-04-02
David Hi
l
vert
Upda
t
e Chang
e
log
commit
|
commitdiff
|
tree
2007-04-02
David
Hilvert
d2
/
align
.
h
:
Recalculate diff s
t
ati
s
tics after increasing
.
.
.
commit
|
commitdiff
|
tree
2007-04-01
D
avid Hi
l
vert
Modify handling of
-
-id
e
n
t
ity in
d2::align so that
.
.
.
commit
|
commitdiff
|
tree
2007-04-01
David
H
ilv
e
rt
A
dd
m
ethods for enabli
n
g
and disabling re
s
tricted sup
p
ort
.
.
.
commit
|
commitdiff
|
tree
2007-04-01
Davi
d
Hilver
t
Add c
h
ec
k
for trans
f
orm
a
tion
s
uppo
r
t
to d2::ali
g
n:
.
.
.
commit
|
commitdiff
|
tree
2007-04-01
Da
v
id
H
ilvert
d2::trans_multi: Add method supported() to chec
k
for
.
.
.
commit
|
commitdiff
|
tree
2007-03-29
Da
v
id Hilvert
Begi
n
using non-trivial
m
u
l
ti-transf
o
rmatio
n
s in d2
.
.
.
commit
|
commitdiff
|
tree
2007-03-29
David Hilvert
d
2
::trans
_
multi:
A
dd get
_
e
l
ement(
)
method
.
commit
|
commitdiff
|
tree
2007-03-27
D
a
vid Hilvert
d
2
::render::ip
c
: Modif
y
allocat
i
on
fo
r
subdomain arg
u
ments
.
.
.
commit
|
commitdiff
|
tree
2007-03-24
David Hi
l
vert
d2::align:
Al
l
oca
t
e ke
p
t_
t
with new
[
] ra
t
her
than malloc
.
.
.
commit
|
commitdiff
|
tree
2007-03-23
David Hilv
e
rt
M
o
d
if
y
s
p
e
cific_*() calls in d2::t
r
ans_
m
ulti to ca
l
l
.
.
.
commit
|
commitdiff
|
tree
2007-03-23
Davi
d
Hilvert
Allocate d2::increm
e
ntal::subdomain_ar
g
s with new[
.
.
.
commit
|
commitdiff
|
tree
2007-03-23
David Hilvert
Reso
l
v
e
c
e
rta
i
n compilation
a
n
d r
u
n-time failur
e
s
.
commit
|
commitdiff
|
tree
2007-03-23
Dav
i
d Hilvert
d2::tran
s
_multi: Upda
t
e metho
d
s
f
o
r a triv
i
al
m
u
l
ti
.
.
.
commit
|
commitdiff
|
tree
2007-03-23
D
avid Hilvert
Initial version of d2
/
tr
a
ns_multi
.
h, tak
e
n from the
.
.
.
commit
|
commitdiff
|
tree
2007-03-23
D
a
v
i
d Hilver
t
Add fi
l
e d2/tr
a
n
s
_single
.
h for i
m
plemen
t
ing sin
g
l
e
.
.
.
commit
|
commitdiff
|
tree
2007-03-21
David Hilv
e
rt
Move sin
g
le-tr
a
nsformation class specifics
from d2
.
.
.
commit
|
commitdiff
|
tree
2007-03-17
Da
v
i
d
Hilv
e
r
t
d
2/tra
n
s_abs
t
ract
.
h: Initial imple
m
entati
o
n of an a
b
stract
.
.
.
commit
|
commitdiff
|
tree
2007-03-17
David Hi
l
vert
d2/tfile
.
h: Call ungetc() w
h
e
n test for non-primar
y
.
.
.
commit
|
commitdiff
|
tree
2007-03-15
D
a
v
id Hilvert
Revise ha
n
dling of
MA elements
.
commit
|
commitdiff
|
tree
2007-03-15
Da
v
id Hilv
e
rt
M
odify --m
a
-card to r
a
nge [1,
i
nf) and add
code to iterate
.
.
.
commit
|
commitdiff
|
tree
2007-03-14
David Hilvert
Add flags to d2::ali
g
n::element_
t
and d2:;tfile to
.
.
.
commit
|
commitdiff
|
tree
2007-03-14
David Hi
l
vert
ui/u
i
_
tty
.
h
:
R
evise
upd
a
te() and up
d
ate_l
o
op() s
o
that
.
.
.
commit
|
commitdiff
|
tree
2007-03-13
Da
v
id Hilver
t
ui/
u
i
_t
t
y
.
h: Add a UI
update thr
e
ad
.
commit
|
commitdiff
|
tree
2007-03-13
David Hilvert
d2::align: expand and rename th
e
data structure for
.
.
.
commit
|
commitdiff
|
tree
2007-03-13
David Hil
v
ert
d2::align: Make a st
r
uct
u
re for f
o
llow s
e
mantics
v
ariables
.
.
.
commit
|
commitdiff
|
tree
2007-03-12
David Hilvert
Add opti
o
n
handling for --ma-card and --
m
a
-cont multi
.
.
.
commit
|
commitdiff
|
tree
2007-03-10
David Hil
v
ert
Update changelog
commit
|
commitdiff
|
tree
2007-03-10
Dav
i
d H
i
lvert
U
p
date help te
x
t
t
o
ref
l
ect n
e
w file-s
c
oped options
.
commit
|
commitdiff
|
tree
2007-03-10
David Hilvert
Allow
f
ile-
s
coped --gs and --gs-mo
commit
|
commitdiff
|
tree
2007-03-09
David Hilvert
Upda
t
e changelog
commit
|
commitdiff
|
tree
2007-03-09
David Hilvert
Ignore fex regions
when n
e
x
is specified
.
commit
|
commitdiff
|
tree
2007-03-09
Da
v
id
Hilvert
Update changelog
commit
|
commitdiff
|
tree
2007-03-09
D
avid Hilvert
Add -
-
blac
k
option
f
or
setting black level
.
commit
|
commitdiff
|
tree
2007-03-08
Da
v
id Hilvert
Add opti
o
n --ev fo
r
s
e
tting e
x
posure v
a
lue
m
eta
-
data
.
commit
|
commitdiff
|
tree
2007-03-08
D
avid Hilvert
D
isable
implicat
i
on for --
e
x
p-register whe
n
--cx is
.
.
.
commit
|
commitdiff
|
tree
2007-03-07
Davi
d
Hilver
t
Modify profile
local
a
lignm
e
nt detail outp
u
t to o
m
it
.
.
.
commit
|
commitdiff
|
tree
2007-03-07
D
a
vid Hilvert
Update changelog
commit
|
commitdiff
|
tree
2007-03-07
David Hilvert
Update profiling ti
m
ers to
incl
u
de
timing detai
l
s for
.
.
.
commit
|
commitdiff
|
tree
2007-03-07
D
avid Hilvert
d2/p
p
m
.
h:
U
pdate error
mes
s
a
g
e
f
or
n
on
-
P
P
M files to
.
.
.
commit
|
commitdiff
|
tree
2007-03-04
David
Hilvert
Update NEW
S
an
d
vers
i
on numbers for 0
.
8
.
7 re
l
ease
.
commit
|
commitdiff
|
tree
2007-03-03
David Hil
v
ert
U
pdate change
l
og
.
commit
|
commitdiff
|
tree
2007-03-03
Da
v
id Hilve
r
t
Make
-
-ip-nowl
default
.
commit
|
commitdiff
|
tree
2007-02-25
David Hilvert
U
pd
a
te changelog
.
commit
|
commitdiff
|
tree
2007-02-25
David Hilvert
Revise argume
n
t handling f
o
r ip-wl argument
s
.
commit
|
commitdiff
|
tree
2007-02-25
David Hil
v
e
r
t
Implement
I
rani-Peleg
weight
li
m
its,
and set a default
.
.
.
commit
|
commitdiff
|
tree
2007-02-25
David
H
ilvert
Upda
t
e Chan
g
elog
commit
|
commitdiff
|
tree
2007-02-25
David
Hilvert
Add a
n
incremental renderer mean invariant weight-limite
d
.
.
.
commit
|
commitdiff
|
tree
2007-02-24
Davi
d
Hilvert
d2::filter::scaled_filter::filter
_
c
h
a
nnel(): Slightly
.
.
.
commit
|
commitdiff
|
tree
2007-02-24
David Hilve
r
t
Update changel
o
g
commit
|
commitdiff
|
tree
2007-02-24
David
H
ilve
r
t
d2::
i
mage::defined
_
s
cale_by_hal
f
(): Replace incorrec
t
.
.
.
commit
|
commitdiff
|
tree
2007-02-24
Davi
d
H
ilvert
d
2
::image::defined_scale_by_half(
)
: Use g
e
omet
r
i
c mean
.
.
.
commit
|
commitdiff
|
tree
2007-02-17
David Hilvert
d
2
/filter/scaled_filter
.
h
:
Cl
e
an up
r
ecently add
e
d
.
.
.
commit
|
commitdiff
|
tree
2007-02-17
D
a
v
id Hilvert
d2/filter/sc
a
led_filter
.
h: R
e
vis
e
c
e
r
tainty calculat
i
ons
.
.
.
commit
|
commitdiff
|
tree
2007-02-17
David Hilvert
N
EWS:
a
dd 0
.
8
.
6 release info
r
m
a
t
ion
commit
|
commitdiff
|
tree
2007-02-17
Dav
i
d
Hilvert
Updat
e
changelog for 0
.
8
.
6
release date
.
commit
|
commitdiff
|
tree
2007-02-17
Davi
d
Hilvert
doc: Rename 'localhost' su
b
di
r
e
ct
o
ry t
o
mo
r
e
relevant
.
.
.
commit
|
commitdiff
|
tree
2007-02-17
D
avid Hilver
t
bootstr
a
p
:
Remove code to
p
rune documenta
t
ion
commit
|
commitdiff
|
tree
2007-02-15
Dav
i
d
Hi
l
vert
Update
v
e
r
si
o
n num
b
er
to 0
.
8
.
6
commit
|
commitdiff
|
tree
2007-02-15
David Hilvert
ui/input
.
h: Updat
e
g
n
ulib header 's
t
rndup
.
h' --> 'string_
.
h'
.
commit
|
commitdiff
|
tree
2007-02-15
Da
v
id
H
ilve
r
t
A
l
l
o
w more flexibility in the return
value
of isinf()
.
commit
|
commitdiff
|
tree
2007-02-14
David
H
i
l
vert
Update cha
n
gelog
commit
|
commitdiff
|
tree
2007-02-14
D
avid Hi
l
vert
d2/align
.
h:
A
dd an alterna
t
e co
d
e path
i
n
t
h
e case
.
.
.
commit
|
commitdiff
|
tree
2007-02-14
D
a
vid H
i
lver
t
d
2::transformation::
{
eu_rotate_
a
bout_scaled,scaled_inverse_t
.
.
.
commit
|
commitdiff
|
tree
2007-02-14
David Hilvert
Update
c
h
angelog
commit
|
commitdiff
|
tree
2007-02-14
David Hilvert
d2
:
:point
:
:{neg,pos}inf(): M
o
dify ass
e
r
t
ions to
allo
w
.
.
.
commit
|
commitdiff
|
tree
2007-02-13
Dav
i
d Hilvert
Modify changelog entry on default setti
n
gs changes
.
.
.
commit
|
commitdiff
|
tree
2007-02-13
D
a
v
i
d Hilvert
d2/ren
d
er/ipc
.
h: Add checks for finiteness to exposure
.
.
.
commit
|
commitdiff
|
tree
2007-02-13
David Hi
l
vert
d2/render/ipc
.
h:
Ad
j
us
t
the c
c
_floor do
w
nwar
d
s, so
.
.
.
commit
|
commitdiff
|
tree
2007-02-13
David Hil
v
ert
Updat
e
ch
a
ngelog
.
commit
|
commitdiff
|
tree
2007-02-13
David Hilvert
d2/render/ip
c
.
h
:
Enable exp
o
sur
e
a
djustmen
t
in Irani
.
.
.
commit
|
commitdiff
|
tree
2007-02-13
David Hilvert
d2/ima
g
e
.
h: R
e
-
e
na
b
le
d
isa
b
led certainty ca
l
culation
.
commit
|
commitdiff
|
tree
2007-02-13
Da
v
id Hilvert
Update cha
n
gelog; re-e
n
able certain
t
y-
w
eighted ali
g
n
m
ent
.
commit
|
commitdiff
|
tree
2007-02-13
David Hilvert
Adjus
t
w
eight thresho
l
d for defined pixels to account
.
.
.
commit
|
commitdiff
|
tree
2007-02-13
David Hilvert
Res
t
ore certa
i
nty-weig
h
ted incremental
re
n
dering, using
.
.
.
commit
|
commitdiff
|
tree
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