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Update changelog
2007-04-21
Davi
d
Hilvert
Update
c
h
angelog
commit
|
commitdiff
|
tree
2007-04-21
Dav
i
d Hilvert
Set --no
-
in
c
t
o def
a
u
lt
.
commit
|
commitdiff
|
tree
2007-04-21
David Hilvert
A
dd comment regar
d
i
n
g rem
o
va
l
method
s
in d2/align
.
h
.
commit
|
commitdiff
|
tree
2007-04-20
Davi
d
Hilv
e
rt
ui_tty: Add mor
e
updates; revise
Irani-Peleg
out
p
ut
.
commit
|
commitdiff
|
tree
2007-04-20
David
Hi
l
ve
r
t
d2::align: Sele
c
t best e
r
ror from each consecutiv
e
.
.
.
commit
|
commitdiff
|
tree
2007-04-20
David Hil
v
ert
Changelog update
commit
|
commitdiff
|
tree
2007-04-20
David Hilvert
U
p
d
a
t
e
changel
o
g
commit
|
commitdiff
|
tree
2007-04-20
D
a
vid Hi
l
ve
r
t
Fix calculation
of global search minimum ove
r
lap c
o
unt
.
.
.
commit
|
commitdiff
|
tree
2007-04-19
David Hi
l
vert
ui_log: Fix format i
n
set_off
s
et()
.
commit
|
commitdiff
|
tree
2007-04-19
David Hi
l
vert
C
h
ange --gs-mo d
e
fault
t
o 67%
.
commit
|
commitdiff
|
tree
2007-04-19
David Hilver
t
ui
:
Log output enhancements
.
commit
|
commitdiff
|
tree
2007-04-19
Dav
i
d
H
ilvert
Allow --gs-mo t
o
be s
p
ecified
a
s a
p
e
r
centage, make
.
.
.
commit
|
commitdiff
|
tree
2007-04-19
Dav
i
d Hilvert
d2::align: Modify _a
l
ign() and make_e
l
ement_nontrivial
.
.
.
commit
|
commitdiff
|
tree
2007-04-19
Da
v
id Hi
l
vert
d2::
a
lign: Add
m
ethod
g
et_
p
ert
u
r
b_set()
.
commit
|
commitdiff
|
tree
2007-04-17
David Hi
l
vert
Add file 'VE
R
SION' for ca
s
es where this does
not exist
.
commit
|
commitdiff
|
tree
2007-04-17
David Hilvert
d
2
::trans_multi:
:
specific_rescale()
:
Rep
l
ace
asse
r
t
i
on
.
.
.
commit
|
commitdiff
|
tree
2007-04-17
David Hilvert
Changelog
edit
s
.
commit
|
commitdiff
|
tree
2007-04-17
David H
i
lvert
Upda
t
e changelog
commit
|
commitdiff
|
tree
2007-04-17
Davi
d
Hilvert
A
dd file ui_quiet
.
h
.
commit
|
commitdiff
|
tree
2007-04-17
David
H
i
lver
t
configure
.
in: Use contents o
f
file VERSION
f
or version
.
.
.
commit
|
commitdiff
|
tree
2007-04-16
Da
v
i
d
Hilv
e
rt
Mo
d
ify black level
i
m
ple
m
entation to always
a
pply
t
o
.
.
.
commit
|
commitdiff
|
tree
2007-04-16
D
avid Hilver
t
Add
'
q
uiet
'
us
e
r inte
r
face type
.
commit
|
commitdiff
|
tree
2007-04-16
David Hilvert
Move o
u
tput identification
details t
o
user
interface
.
commit
|
commitdiff
|
tree
2007-04-16
David Hi
l
v
e
r
t
ui_log:
:
i
p
_step_done(): 'Finished frame' --> 'Finished
.
.
.
commit
|
commitdiff
|
tree
2007-04-16
David
H
ilver
t
Refine ui_log::ip_step_don
e
()
.
commit
|
commitdiff
|
tree
2007-04-15
David Hi
l
vert
d2/ppm
.
h: Don't
s
e
t gain
v
alu
e
s if n
o
n
e
a
r
e sp
e
cifi
e
d
.
.
.
commit
|
commitdiff
|
tree
2007-04-15
David Hilv
e
rt
u
i_log: Add
s
e
parat
e
o
u
t
put for match and mi
s
match
.
.
.
commit
|
commitdiff
|
tree
2007-04-15
David Hil
v
e
rt
ui_l
o
g
: Add more logging output
.
commit
|
commitdiff
|
tree
2007-04-15
David
Hil
v
ert
Add rudimentary logging interface
.
commit
|
commitdiff
|
tree
2007-04-15
David Hilvert
ui
:
Indicate
w
hen no local align
m
ent details are
availa
b
le
.
commit
|
commitdiff
|
tree
2007-04-14
David Hilve
r
t
d2:
:
t
r
a
n
s_multi::specific_
r
escal
e
(): Add an assert
.
.
.
commit
|
commitdiff
|
tree
2007-04-13
David Hilvert
Be
g
in
implement
i
ng d
2
:
:
align::
c
alculate_element_region
(
)
.
commit
|
commitdiff
|
tree
2007-04-13
David
H
ilvert
d2::a
l
ign::_ali
g
n(): Add c
o
d
e
t
o store to and
r
etrie
v
e
.
.
.
commit
|
commitdiff
|
tree
2007-04-09
Dav
i
d Hilvert
Add
code to rec
a
lculate
each non-
t
r
i
v
i
al non-pri
m
a
ry
.
.
.
commit
|
commitdiff
|
tree
2007-04-09
David Hil
v
ert
Add
local_
a
x_count to the li
s
t of parameters taken
.
.
.
commit
|
commitdiff
|
tree
2007-04-09
David Hilvert
Chan
g
e
barrel distorti
o
n multiplier and rate of
c
hange
.
.
.
commit
|
commitdiff
|
tree
2007-04-08
David Hi
l
vert
A
dd
m
ethods
d2
:
:align::make_
e
lement_
n
ontrivia
l
()
,
d2
.
.
.
commit
|
commitdiff
|
tree
2007-04-03
D
avid Hilvert
d2::align:
:
fo
l
low(): Rever
t
l
ooping over old_* element
.
.
.
commit
|
commitdiff
|
tree
2007-04-03
David Hilvert
d2
:
:a
l
ign::follow(): Upda
t
e element in
d
ice
s
of all
.
.
.
commit
|
commitdiff
|
tree
2007-04-03
D
a
vid Hilvert
d2::tfile: Bug
f
ix in handl
i
ng of non-primary elements
.
commit
|
commitdiff
|
tree
2007-04-03
Davi
d
Hil
v
e
rt
C
o
pyright notice updates
.
commit
|
commitdiff
|
tree
2007-04-03
David Hilvert
A
d
d
c
ode for loading and saving n
o
n-primary align
m
en
t
.
.
.
commit
|
commitdiff
|
tree
2007-04-03
David Hilvert
U
p
date changelog
.
commit
|
commitdiff
|
tree
2007-04-03
Dav
i
d Hi
l
ver
t
u
i
: Modify matc
h
forma
t
strings
t
o provide co
n
stant
.
.
.
commit
|
commitdiff
|
tree
2007-04-03
D
a
vid Hilvert
ui_
t
ty: Add fiel
d
width and preci
s
io
n
s
p
ecifiers to
.
.
.
commit
|
commitdiff
|
tree
2007-04-03
D
a
vi
d
Hilvert
Swap arg
u
ment
s
to alignment status so
t
h
a
t
frequent
.
.
.
commit
|
commitdiff
|
tree
2007-04-03
Dav
i
d Hilvert
ui_tt
y
:
C
h
ange floating point formats from %f to %g
.
.
.
commit
|
commitdiff
|
tree
2007-04-03
Davi
d
Hi
l
vert
d2::align: Move follow
i
ng logic fr
o
m
_al
i
gn()
to a
.
.
.
commit
|
commitdiff
|
tree
2007-04-02
David Hilvert
U
pdate
ch
a
ngel
o
g
commit
|
commitdiff
|
tree
2007-04-02
Dav
i
d Hilvert
R
e
move file 'sga
u
ss
.
h' mi
s
sin
g
from sgauss patch, as
.
.
.
commit
|
commitdiff
|
tree
2007-04-02
D
avid Hi
l
vert
Add missi
n
g file f
r
om earlier sg
a
uss patch
.
Will be
.
.
.
commit
|
commitdiff
|
tree
2007-04-02
David Hi
l
v
e
rt
Update changelog
commit
|
commitdiff
|
tree
2007-04-02
D
a
vid Hilver
t
Upda
t
e changelog
commit
|
commitdiff
|
tree
2007-04-02
David
H
i
lvert
Move the mu
l
ti-t
r
ansformation el
e
men
t
switching
loop
.
.
.
commit
|
commitdiff
|
tree
2007-04-02
David H
i
lve
r
t
U
p
date Change
l
o
g
commit
|
commitdiff
|
tree
2007-04-02
David Hilv
e
rt
d2/
a
l
i
gn
.
h:
Recalculate diff stat
i
stics after increasing
.
.
.
commit
|
commitdiff
|
tree
2007-04-01
D
a
vid Hilvert
M
o
d
i
fy handling
of --identity in d2::align so that
.
.
.
commit
|
commitdiff
|
tree
2007-04-01
David Hilver
t
A
dd meth
o
ds for ena
b
ling and dis
a
bling restric
t
e
d
su
p
p
ort
.
.
.
commit
|
commitdiff
|
tree
2007-04-01
David Hilver
t
Add check
for transf
o
rmatio
n
support
to d2::ali
g
n:
.
.
.
commit
|
commitdiff
|
tree
2007-04-01
David Hilvert
d2::trans_multi: Add method supported() t
o
che
c
k for
.
.
.
commit
|
commitdiff
|
tree
2007-03-29
David Hilvert
Begin using
non-tri
v
i
al mul
t
i-tran
s
formations in d2
.
.
.
commit
|
commitdiff
|
tree
2007-03-29
D
a
vid Hilvert
d2::trans_mult
i
: Add get_element() m
e
thod
.
commit
|
commitdiff
|
tree
2007-03-27
David Hilvert
d2::r
e
nder::ipc: Modify allocati
o
n
for
s
u
bdo
m
ain argu
m
e
nts
.
.
.
commit
|
commitdiff
|
tree
2007-03-24
D
a
v
id H
i
l
v
e
r
t
d2::align: Allocate kept_t with
new
[
] rather
t
ha
n
ma
l
lo
c
.
.
.
commit
|
commitdiff
|
tree
2007-03-23
D
a
v
i
d Hilvert
Modify specific_*() ca
l
ls i
n
d2::tr
a
ns_multi to call
.
.
.
commit
|
commitdiff
|
tree
2007-03-23
David Hi
l
vert
Allocate d2::incremental::subdomain_a
r
gs with n
e
w[
.
.
.
commit
|
commitdiff
|
tree
2007-03-23
David Hilvert
Re
s
olve c
e
rtain co
m
pilati
o
n
a
nd
r
un-time
failures
.
commit
|
commitdiff
|
tree
2007-03-23
David
H
i
lvert
d2::trans_multi: Up
d
ate metho
d
s for a trivi
a
l multi
.
.
.
commit
|
commitdiff
|
tree
2007-03-23
David
H
i
l
vert
I
n
itial
version
o
f d2/
t
rans
_
multi
.
h
, taken from the
.
.
.
commit
|
commitdiff
|
tree
2007-03-23
David Hilvert
Add file d
2
/
t
ra
n
s_singl
e
.
h for implementi
n
g sin
g
l
e
.
.
.
commit
|
commitdiff
|
tree
2007-03-21
David
Hilvert
Mo
v
e single-tra
n
sforma
t
ion class specifics from d2
.
.
.
commit
|
commitdiff
|
tree
2007-03-17
Da
v
id Hilvert
d2/t
r
a
n
s_ab
s
trac
t
.
h:
I
nitial
i
mplement
a
tion of an abs
t
ract
.
.
.
commit
|
commitdiff
|
tree
2007-03-17
David Hil
v
e
r
t
d2/tfile
.
h: Cal
l
ungetc(
)
when
test
for non-prim
a
ry
.
.
.
commit
|
commitdiff
|
tree
2007-03-15
David
Hilvert
Revise ha
n
dling o
f
MA
elements
.
commit
|
commitdiff
|
tree
2007-03-15
David
H
ilvert
Modi
f
y --ma-card
t
o range [1,i
n
f) and add code to it
e
rat
e
.
.
.
commit
|
commitdiff
|
tree
2007-03-14
Davi
d
Hilvert
Add flags
to d
2
::
a
lign::element_t and d2:;tfile
to
.
.
.
commit
|
commitdiff
|
tree
2007-03-14
Davi
d
Hil
v
ert
ui/ui_tty
.
h
:
R
evis
e
update() and u
p
d
a
te_loop() so that
.
.
.
commit
|
commitdiff
|
tree
2007-03-13
David Hi
l
vert
ui/u
i
_tty
.
h: Add a UI update thr
e
a
d
.
commit
|
commitdiff
|
tree
2007-03-13
David Hilvert
d2::align: expa
n
d
and rename th
e
data structure
f
or
.
.
.
commit
|
commitdiff
|
tree
2007-03-13
Dav
i
d Hilvert
d2::align: Make a str
u
cture
for follow
se
m
antics
v
a
r
i
a
bles
.
.
.
commit
|
commitdiff
|
tree
2007-03-12
Dav
i
d H
i
l
vert
Add option handlin
g
f
or --ma-card a
n
d
-
-ma-cont mul
t
i
.
.
.
commit
|
commitdiff
|
tree
2007-03-10
Dav
i
d Hilvert
Update changelog
commit
|
commitdiff
|
tree
2007-03-10
David Hilvert
Update help text to reflect ne
w
f
i
le-
s
coped options
.
commit
|
commitdiff
|
tree
2007-03-10
Da
v
id Hi
l
vert
All
o
w
f
i
le-
s
coped --gs and --g
s
-mo
commit
|
commitdiff
|
tree
2007-03-09
D
a
vid Hilvert
Update changelog
commit
|
commitdiff
|
tree
2007-03-09
D
avid Hi
l
vert
Ignore fex regions when
nex is specifie
d
.
commit
|
commitdiff
|
tree
2007-03-09
David
Hilv
e
rt
Update changelog
commit
|
commitdiff
|
tree
2007-03-09
David Hilvert
Add --black
o
pti
o
n for
setting black leve
l
.
commit
|
commitdiff
|
tree
2007-03-08
D
a
vid Hilvert
Ad
d
option --e
v
for setting expos
u
re value
m
eta-data
.
commit
|
commitdiff
|
tree
2007-03-08
Da
v
id Hilvert
Dis
a
ble imp
l
ic
a
t
ion for --exp-register whe
n
-
-cx
is
.
.
.
commit
|
commitdiff
|
tree
2007-03-07
David Hil
v
e
r
t
Modify profile
l
o
cal alignment detail o
u
tput to omit
.
.
.
commit
|
commitdiff
|
tree
2007-03-07
Davi
d
Hilvert
Update changel
o
g
commit
|
commitdiff
|
tree
2007-03-07
David
Hilvert
Up
d
a
t
e profi
l
ing
time
r
s t
o
in
c
lude t
i
ming detai
l
s for
.
.
.
commit
|
commitdiff
|
tree
2007-03-07
David Hilvert
d2/ppm
.
h: Update error me
s
sag
e
for non-PPM f
i
l
e
s
t
o
.
.
.
commit
|
commitdiff
|
tree
2007-03-04
David
H
ilvert
Update NEWS and version numbers for 0
.
8
.
7
rele
a
se
.
commit
|
commitdiff
|
tree
2007-03-03
David Hilvert
Update
c
h
a
ngel
o
g
.
commit
|
commitdiff
|
tree
2007-03-03
David Hil
v
e
rt
Make --ip-nowl default
.
commit
|
commitdiff
|
tree
2007-02-25
David Hilvert
Update
cha
n
ge
l
o
g
.
commit
|
commitdiff
|
tree
2007-02-25
D
avid Hilvert
Revise argument
h
andling for ip-wl arguments
.
commit
|
commitdiff
|
tree
2007-02-25
D
avid Hil
v
ert
Imp
l
e
m
e
n
t Ira
n
i-Peleg w
e
ight lim
i
ts,
a
nd set a default
.
.
.
commit
|
commitdiff
|
tree
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