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ale: Make default the ale binary having the same dirname.
2007-05-03
David Hilvert
d2::align::_align(): Increase stable_count limit to 5
.
commit
|
commitdiff
|
tree
2007-05-03
D
avid Hilvert
Add p
e
rturbat
i
on snap-to-grid, m
o
ve perturbat
i
on mul
t
i
p
lie
r
s
.
.
.
commit
|
commitdiff
|
tree
2007-05-02
D
av
i
d
H
ilv
e
rt
A
l
l
ow
non-finit
e
multip
l
ier
s
in perturb
_
t
est
(
); remove
.
.
.
commit
|
commitdiff
|
tree
2007-05-02
Davi
d
Hilvert
Resolve rotational al
i
gnm
e
nt bug; add
r
otation
a
l an
d
.
.
.
commit
|
commitdiff
|
tree
2007-05-02
D
a
v
i
d
H
ilvert
Add d2:
:
align::diff_stat
_
t::old_runs, to
s
tore
o
ld
.
.
.
commit
|
commitdiff
|
tree
2007-04-30
David Hilve
r
t
Ad
d
a structure
for run-s
p
ecif
i
c data to diff_s
t
at_t
.
commit
|
commitdiff
|
tree
2007-04-27
D
avid H
i
lve
r
t
Re
m
ov
e
d2::trans
_
multi::
o
perator= and instrument
a
tio
n
.
commit
|
commitdiff
|
tree
2007-04-26
D
a
vi
d
Hilvert
d2::align: Minor bug
f
i
xes
a
n
d debug
g
ing instru
m
entation
.
commit
|
commitdiff
|
tree
2007-04-26
David
H
ilver
t
Add code to u
s
e error multipliers and cen
t
ro
i
ds
.
commit
|
commitdiff
|
tree
2007-04-25
David Hilvert
d2::al
i
gn: I
n
itial,
b
roken
i
mple
m
entation of alignment
.
.
.
commit
|
commitdiff
|
tree
2007-04-25
Davi
d
Hilver
t
d2::align::diff_st
a
t_t::sample()
:
Fix
incorrect use
.
.
.
commit
|
commitdiff
|
tree
2007-04-25
David Hilvert
d2::align:
Upd
a
te
d
iff and sample code to opera
t
e on
.
.
.
commit
|
commitdiff
|
tree
2007-04-25
Da
v
id Hilvert
d2::a
l
i
g
n: Add
code
t
o calculate aver
a
ge
pixel displac
e
ment
.
.
.
commit
|
commitdiff
|
tree
2007-04-24
Da
v
i
d
H
ilvert
ui
/
input
.
h
: Report an error when
-
-ui is us
e
d
wi
t
h
.
.
.
commit
|
commitdiff
|
tree
2007-04-24
David
Hil
v
ert
Change
ui_l
o
g logging
to st
d
ou
t
a
n
d revise dyna
m
ic
.
.
.
commit
|
commitdiff
|
tree
2007-04-23
David Hilvert
d2::al
i
g
n: Add me
t
hod is_b
e
tter(), wh
i
ch coul
d
be used
.
.
.
commit
|
commitdiff
|
tree
2007-04-22
David Hilvert
ui/
h
elp
.
h: Chang
e
h
e
lp text
for --mcd-removal to ref
l
e
c
t
.
.
.
commit
|
commitdiff
|
tree
2007-04-22
Dav
i
d
Hilvert
Match p
a
rent
h
eses
.
commit
|
commitdiff
|
tree
2007-04-22
David Hi
l
ve
r
t
d2/align
.
h: Encapsulate reliabil
i
ty check within is_relia
b
le
.
.
.
commit
|
commitdiff
|
tree
2007-04-22
D
a
vid Hilve
r
t
Chan
g
e --mcd-
r
e
m
oval default to 1
.
commit
|
commitdiff
|
tree
2007-04-22
D
avid Hilvert
Various changes and bugfi
x
es f
o
r dynamic m
o
nte
c
a
rlo
.
.
.
commit
|
commitdiff
|
tree
2007-04-22
David Hilvert
d2/a
l
ign
.
h: prior to
c
hanging per
t
urbatio
n
step s
i
ze
.
.
.
commit
|
commitdiff
|
tree
2007-04-21
D
a
vid Hilvert
U
p
date changelog
commit
|
commitdiff
|
tree
2007-04-21
David Hi
l
vert
Update changelog
commit
|
commitdiff
|
tree
2007-04-21
David
Hilvert
Se
t
--n
o
-in
c
to default
.
commit
|
commitdiff
|
tree
2007-04-21
Davi
d
H
ilvert
Ad
d
com
m
ent regarding remov
a
l
me
t
h
ods in d2
/
align
.
h
.
commit
|
commitdiff
|
tree
2007-04-20
Davi
d
Hilvert
u
i
_tty: Add more updates; revise
I
rani-Pel
e
g output
.
commit
|
commitdiff
|
tree
2007-04-20
David H
i
lvert
d2::ali
g
n:
Select best error from each consecut
i
ve
.
.
.
commit
|
commitdiff
|
tree
2007-04-20
David Hilvert
Changelog update
commit
|
commitdiff
|
tree
2007-04-20
David
H
ilv
e
rt
Update changelog
commit
|
commitdiff
|
tree
2007-04-20
David
H
i
lvert
Fix calcula
t
ion of globa
l
search minimum overlap count
.
.
.
commit
|
commitdiff
|
tree
2007-04-19
D
a
vi
d
Hilvert
ui_log: Fix form
a
t i
n
set_offs
e
t(
)
.
commit
|
commitdiff
|
tree
2007-04-19
David
Hilvert
Ch
a
nge --gs-mo defau
l
t to
67%
.
commit
|
commitdiff
|
tree
2007-04-19
David
H
i
l
v
e
rt
ui: Log
o
utput enha
n
ce
m
ents
.
commit
|
commitdiff
|
tree
2007-04-19
David Hil
v
ert
All
o
w --gs-mo to be sp
e
c
i
fied as a percent
a
ge, make
.
.
.
commit
|
commitdiff
|
tree
2007-04-19
D
a
vi
d
Hilvert
d
2
:
:
a
lign: Modify _
a
lign() and make_element_non
t
rivial
.
.
.
commit
|
commitdiff
|
tree
2007-04-19
David Hilve
r
t
d
2
::align: Add method
get_
p
erturb_set()
.
commit
|
commitdiff
|
tree
2007-04-17
Da
v
i
d Hilvert
Add f
i
le 'VERSION' for ca
s
es where this does
not ex
i
st
.
commit
|
commitdiff
|
tree
2007-04-17
D
avid Hi
l
vert
d
2::
t
rans_multi::specific
_
rescale():
R
epl
a
ce ass
e
rt
i
on
.
.
.
commit
|
commitdiff
|
tree
2007-04-17
Dav
i
d Hilvert
Changelog
e
dit
s
.
commit
|
commitdiff
|
tree
2007-04-17
David Hilvert
U
p
date changel
o
g
commit
|
commitdiff
|
tree
2007-04-17
D
a
vid Hilvert
A
d
d
file ui_qui
e
t
.
h
.
commit
|
commitdiff
|
tree
2007-04-17
David Hilvert
config
u
r
e
.
in:
U
se content
s
of file VERSION fo
r
vers
i
o
n
.
.
.
commit
|
commitdiff
|
tree
2007-04-16
D
a
v
id Hilvert
Mod
i
fy
bla
c
k
lev
e
l imp
l
e
m
ent
a
tion
to
always
appl
y
t
o
.
.
.
commit
|
commitdiff
|
tree
2007-04-16
Davi
d
Hilvert
Add 'quiet' user int
e
rface ty
p
e
.
commit
|
commitdiff
|
tree
2007-04-16
D
a
vid
Hilvert
Move
output ident
i
fica
t
i
on details to u
s
er
i
nterface
.
commit
|
commitdiff
|
tree
2007-04-16
David Hilvert
u
i_log::ip_step_don
e
(): 'Fi
n
i
s
hed fra
m
e' --> 'Fini
s
h
e
d
.
.
.
commit
|
commitdiff
|
tree
2007-04-16
D
a
vid Hilve
r
t
Refine ui_log::ip_step_done()
.
commit
|
commitdiff
|
tree
2007-04-15
David Hilve
r
t
d
2/
p
pm
.
h
:
Don't s
e
t gain value
s
if none a
r
e specified
.
.
.
commit
|
commitdiff
|
tree
2007-04-15
David Hilvert
ui_log:
A
d
d
separ
a
te output for match and mis
m
atch
.
.
.
commit
|
commitdiff
|
tree
2007-04-15
Dav
i
d Hil
v
ert
u
i_log
:
Add m
o
re
l
oggin
g
output
.
commit
|
commitdiff
|
tree
2007-04-15
David Hilvert
Add rudimentary log
g
ing interface
.
commit
|
commitdiff
|
tree
2007-04-15
David Hilvert
ui: Indicate
w
hen no l
o
cal a
l
i
gnme
n
t
de
t
ails are available
.
commit
|
commitdiff
|
tree
2007-04-14
Dav
i
d
Hilvert
d2:
:
trans_mult
i
::s
p
ecific
_
rescale(): Add an
assert
.
.
.
commit
|
commitdiff
|
tree
2007-04-13
David Hilvert
Begin implementing d2::al
i
gn::
c
alc
u
l
a
t
e_
e
le
m
ent_
r
egion(
)
.
commit
|
commitdiff
|
tree
2007-04-13
David Hil
v
ert
d2::align:
:
_align(): Add code to store to and
retrieve
.
.
.
commit
|
commitdiff
|
tree
2007-04-09
D
a
v
i
d Hilvert
A
dd co
d
e
to
r
ecalc
u
late each non-t
r
ivial non-
p
rimary
.
.
.
commit
|
commitdiff
|
tree
2007-04-09
Dav
i
d Hilvert
Ad
d
loca
l
_ax_coun
t
t
o
t
he list of parameters taken
.
.
.
commit
|
commitdiff
|
tree
2007-04-09
Da
v
id
Hilvert
Chan
g
e barrel distorti
o
n mult
i
plier and rate of change
.
.
.
commit
|
commitdiff
|
tree
2007-04-08
David Hilvert
Add met
h
ods d2::align::make_element_
n
ontrivial()
,
d2
.
.
.
commit
|
commitdiff
|
tree
2007-04-03
David
H
ilv
e
rt
d
2
::ali
g
n:
:
follow(): Revert loopi
n
g over old_* element
.
.
.
commit
|
commitdiff
|
tree
2007-04-03
David Hilvert
d2::al
i
gn::follow(): Update element indic
e
s
of all
.
.
.
commit
|
commitdiff
|
tree
2007-04-03
David Hilvert
d
2::tfi
l
e: B
u
gfix in handling o
f
n
o
n-
p
rimary
elements
.
commit
|
commitdiff
|
tree
2007-04-03
D
avid Hilve
r
t
Copyright notice updates
.
commit
|
commitdiff
|
tree
2007-04-03
David Hil
v
ert
Add cod
e
for loading and
saving
n
on-p
r
imar
y
a
l
ignment
.
.
.
commit
|
commitdiff
|
tree
2007-04-03
David H
i
l
v
ert
U
pd
a
te cha
n
gelo
g
.
commit
|
commitdiff
|
tree
2007-04-03
David Hilvert
ui:
Modify match fo
r
m
a
t strings to pro
v
ide const
a
nt
.
.
.
commit
|
commitdiff
|
tree
2007-04-03
D
avid Hilvert
ui_tty
:
Ad
d
field w
i
dth and precision s
p
ecifiers to
.
.
.
commit
|
commitdiff
|
tree
2007-04-03
Da
v
i
d Hilvert
Swap arguments to alignment
s
t
atus so that frequent
.
.
.
commit
|
commitdiff
|
tree
2007-04-03
David
H
ilvert
ui_tty: Change floating po
i
nt formats fro
m
%f to %g
.
.
.
commit
|
commitdiff
|
tree
2007-04-03
David Hilvert
d
2
::align: Move following logic fr
o
m _align() to a
.
.
.
commit
|
commitdiff
|
tree
2007-04-02
David Hilvert
U
p
date changelog
commit
|
commitdiff
|
tree
2007-04-02
D
a
vid Hilver
t
Remove
f
ile 'sgauss
.
h
'
mis
s
ing fro
m
sgauss
patch
,
as
.
.
.
commit
|
commitdiff
|
tree
2007-04-02
Da
v
i
d Hilvert
A
d
d missing file from ea
r
l
ier
sgauss patch
.
Wi
l
l
b
e
.
.
.
commit
|
commitdiff
|
tree
2007-04-02
D
avid Hilvert
Update changelog
commit
|
commitdiff
|
tree
2007-04-02
David Hilvert
Update
c
hangelog
commit
|
commitdiff
|
tree
2007-04-02
D
a
vi
d
Hi
l
v
ert
Move the multi-trans
f
orm
a
tion elemen
t
switching
l
oop
.
.
.
commit
|
commitdiff
|
tree
2007-04-02
D
a
vid Hilv
e
r
t
Upda
t
e
Chang
e
log
commit
|
commitdiff
|
tree
2007-04-02
David H
i
lve
r
t
d2/align
.
h: Recalcul
a
t
e
d
i
ff statistics
after i
n
creasing
.
.
.
commit
|
commitdiff
|
tree
2007-04-01
D
a
vi
d
Hilvert
Modify handl
i
ng of -
-
id
e
ntity in d2::a
l
ign s
o
t
h
a
t
.
.
.
commit
|
commitdiff
|
tree
2007-04-01
David
H
i
l
ve
r
t
Add
me
t
h
ods
for en
a
bli
n
g and disabling restricted support
.
.
.
commit
|
commitdiff
|
tree
2007-04-01
David Hilvert
A
d
d che
c
k
for t
r
a
n
sformation suppo
r
t to d2::align:
.
.
.
commit
|
commitdiff
|
tree
2007-04-01
Dav
i
d Hilvert
d2::trans_mul
t
i
:
Add method supported() to
c
h
e
c
k fo
r
.
.
.
commit
|
commitdiff
|
tree
2007-03-29
David
H
ilvert
Begin u
s
i
n
g
n
o
n
-trivial mul
t
i
-
tra
n
sforma
t
ions in d2
.
.
.
commit
|
commitdiff
|
tree
2007-03-29
David Hil
v
ert
d2::trans
_
m
u
lti: Ad
d
g
et_element() met
h
od
.
commit
|
commitdiff
|
tree
2007-03-27
David H
i
l
vert
d2::
r
ender::ipc: Modify allo
c
ation for subdoma
i
n arg
u
ments
.
.
.
commit
|
commitdiff
|
tree
2007-03-24
David
Hilvert
d2::align
:
Alloca
t
e kept_t wi
t
h new[]
r
ather than malloc
.
.
.
commit
|
commitdiff
|
tree
2007-03-23
D
av
i
d Hilv
e
rt
Mo
d
if
y
specifi
c
_*() call
s
i
n
d2::t
r
an
s
_multi to cal
l
.
.
.
commit
|
commitdiff
|
tree
2007-03-23
David Hil
v
ert
Allocate d2
:
:
increme
n
t
al::
s
ubdomain
_
args with new[
.
.
.
commit
|
commitdiff
|
tree
2007-03-23
David Hilvert
Resolve certain
c
ompilation and run
-
time failur
e
s
.
commit
|
commitdiff
|
tree
2007-03-23
David
H
ilv
e
rt
d2::
t
r
a
ns_multi:
U
pda
t
e m
e
thods for a tr
i
vi
a
l multi
.
.
.
commit
|
commitdiff
|
tree
2007-03-23
Dav
i
d
Hilvert
I
niti
a
l
v
ers
i
o
n
of d2/trans
_
mult
i
.
h, taken from the
.
.
.
commit
|
commitdiff
|
tree
2007-03-23
Dav
i
d Hilvert
Add file d
2
/tr
a
ns
_
s
ingle
.
h for implementing sing
l
e
.
.
.
commit
|
commitdiff
|
tree
2007-03-21
David
H
ilv
e
rt
Move si
n
g
l
e-transf
o
rmation c
l
a
s
s sp
e
cifics from d2
.
.
.
commit
|
commitdiff
|
tree
2007-03-17
David
Hilvert
d2/trans_ab
s
t
r
act
.
h: Initial implemen
t
ation of an abstract
.
.
.
commit
|
commitdiff
|
tree
2007-03-17
David H
i
lvert
d2/tfile
.
h: Call ungetc() w
h
en test for non-primary
.
.
.
commit
|
commitdiff
|
tree
2007-03-15
David Hilvert
Rev
i
se
h
andli
n
g of MA ele
m
ents
.
commit
|
commitdiff
|
tree
2007-03-15
David Hilvert
Modify --ma-card t
o
range [
1
,inf) an
d
add co
d
e
t
o i
t
e
r
a
te
.
.
.
commit
|
commitdiff
|
tree
2007-03-14
David Hilvert
Add flags
to d2::align::ele
m
ent
_
t a
n
d d2:;tfil
e
t
o
.
.
.
commit
|
commitdiff
|
tree
2007-03-14
David Hilv
e
rt
ui/ui_tt
y
.
h: Revise u
p
date() and update_loop() so that
.
.
.
commit
|
commitdiff
|
tree
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