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scan of worm works now
2010-08-31
martin
scan of worm
works now
commit
|
commitdiff
|
tree
2010-08-28
martin
forgot t
o
save
d
raw-model
commit
|
commitdiff
|
tree
2010-08-28
martin
for a lo
n
g
t
i
me
i
forgo
t
to
comm
i
t frontend/m
o
del
.
lisp
commit
|
commitdiff
|
tree
2010-08-28
mar
t
i
n
the psf has th
e
right orientation
now
commit
|
commitdiff
|
tree
2010-08-28
martin
i
c
a
n now render the co
n
vol
v
ed volume ontop o
f
the
.
.
.
commit
|
commitdiff
|
tree
2010-08-27
mart
i
n
fftshift was at wrong place in con
v
olve-circ
commit
|
commitdiff
|
tree
2010-08-27
martin
the
d
ispatch function for ft didn't
h
a
v
e t as
d
efault
.
.
.
commit
|
commitdiff
|
tree
2010-08-27
martin
played wi
t
h con
v
olution
commit
|
commitdiff
|
tree
2010-08-26
martin
model gene
r
at
o
r see
m
s to wor
k
commit
|
commitdiff
|
tree
2010-08-26
m
a
rtin
i
n
trod
u
ction
o
f classes t
o
store the m
o
dels
commit
|
commitdiff
|
tree
2010-08-26
martin
fr
o
ntend/ c
o
mpiles now
,
there were some changes nece
s
sar
y
.
.
.
commit
|
commitdiff
|
tree
2010-08-26
ma
r
t
in
move code from run and angular-illumination
i
n the
.
.
.
commit
|
commitdiff
|
tree
2010-08-26
martin
undo parallelizati
o
n
commit
|
commitdiff
|
tree
2010-08-26
martin
pa
r
alleli
z
ed nuc
l
e
i s
c
a
n but it
does
n
't scale well
commit
|
commitdiff
|
tree
2010-08-25
martin
del
e
ted a lot of stuff in angular-illum
i
nation and
.
.
.
commit
|
commitdiff
|
tree
2010-08-25
m
a
rtin
m
o
ved funct
i
on that genera
t
e
s
d
irection f
r
om two angles
.
.
.
commit
|
commitdiff
|
tree
2010-08-25
martin
f
orgot p
a
c
k
age
commit
|
commitdiff
|
tree
2010-08-25
martin
move dra
w
ing functions into
g
ui
commit
|
commitdiff
|
tree
2010-08-25
martin
creat
e
package for
l
ens/
commit
|
commitdiff
|
tree
2010-08-25
martin
repl
a
ced the
d
efs
t
ruct
s
in len
s
/ with defclass ob
j
ects
.
.
.
commit
|
commitdiff
|
tree
2010-08-25
ma
r
tin
raytrace compiles aga
i
n
,
so
m
e
c
hanges in angu
l
ar-illuminatio
.
.
.
commit
|
commitdiff
|
tree
2010-08-25
martin
r
ay-s
p
he
r
e-intersection-length and ray
-
spheres-in
t
ersection
.
.
.
commit
|
commitdiff
|
tree
2010-08-25
martin
introdu
c
ed conditions into quad
r
a
t
ic s
o
lver
commit
|
commitdiff
|
tree
2010-08-25
m
a
rtin
defclass ray in ve
c
tor
commit
|
commitdiff
|
tree
2010-08-23
martin
introduc
e
the
m
acro v
.
us
e
v i
f
you want
t
o crea
t
e
.
.
.
commit
|
commitdiff
|
tree
2010-08-23
martin
draw objective
commit
|
commitdiff
|
tree
2010-08-23
mart
i
n
dra
w
t
h
e
mo
d
el
commit
|
commitdiff
|
tree
2010-08-23
martin
added gui
commit
|
commitdiff
|
tree
2010-08-20
martin
added s
i
mplex-anneal
t
o run
.
lisp so that it compiles
.
.
.
commit
|
commitdiff
|
tree
2010-08-19
martin
crea
t
e a tes
t
sa
m
pl
e
con
s
i
sting of a pl
a
ne of sp
h
e
r
es
.
.
.
commit
|
commitdiff
|
tree
2010-08-19
martin
resam
p
l
e
-2 was a
l
so wron
g
commit
|
commitdiff
|
tree
2010-08-19
martin
t
here wa
s
a
spur
i
o
u
s factor in r
u
n
.
lisp
.
.
draw-o
v
als
commit
|
commitdiff
|
tree
2010-08-19
m
ar
t
i
n
actua
l
ly div
i
de by
n
a
f
te
r
e
a
c
h forward transform and
.
.
.
commit
|
commitdiff
|
tree
2010-08-19
m
a
rt
i
n
f
o
r
c
onv
o
lut
i
on t
o
w
ork well fft has to divide by sqrt
.
.
.
commit
|
commitdiff
|
tree
2010-08-19
mart
i
n
convolve
s
h
oul
d
n
'
t multiply with n
commit
|
commitdiff
|
tree
2010-08-19
mart
i
n
fixed resam
p
le (the arguments
x
x
y
y zz were s
h
uffled
)
commit
|
commitdiff
|
tree
2010-08-19
marti
n
i had to verify
tha
t
c
uff
t
a
c
tua
l
ly works in c
commit
|
commitdiff
|
tree
2010-08-19
m
artin
cuda-
f
ft bug in cuda-f
r
ee, n
o
w it
w
orks
commit
|
commitdiff
|
tree
2010-08-18
martin
psf
d
i
dn't work
beca
u
se of r
e
ally b
a
d error
i
n
ffi
.
.
.
commit
|
commitdiff
|
tree
2010-08-18
mart
i
n
t
h
at l
a
y around a
while uncommi
t
ed
commit
|
commitdiff
|
tree
2010-08-18
martin
disable c
u
da for now as
i
t
s not
reliable
commit
|
commitdiff
|
tree
2010-08-16
mart
i
n
m
o
ved cuda-fft into vol and
u
sed
macros t
o
write the
.
.
.
commit
|
commitdiff
|
tree
2010-08-16
marti
n
opera
t
or
.
.
i
fo
r
got
t
o put
* instead of +
i
n the
.
.
.
commit
|
commitdiff
|
tree
2010-08-16
martin
macro-macros
.
.
get-short-type
di
d
n't work for (co
m
plex
.
.
.
commit
|
commitdiff
|
tree
2010-08-13
martin
t
he following
vol
files compile
commit
|
commitdiff
|
tree
2010-08-13
ma
r
ti
n
interpola
t
ion
g
eneral
functi
o
n
commit
|
commitdiff
|
tree
2010-08-13
ma
r
tin
r
esample
commit
|
commitdiff
|
tree
2010-08-13
martin
interpolate sho
u
l
d work now, I was able to delet
e
a
.
.
.
commit
|
commitdiff
|
tree
2010-08-13
mar
t
in
changed
c
ross-sec
t
ion-xz
into mac
r
o
commit
|
commitdiff
|
tree
2010-08-13
m
a
rtin
created
.
giti
g
nore
commit
|
commitdiff
|
tree
2010-08-13
martin
spread the contents
o
f vol o
v
er
a
lot of f
i
les
commit
|
commitdiff
|
tree
2010-08-13
martin
star
t
ing
to split the b
i
g vol
.
lisp into
s
maller parts
commit
|
commitdiff
|
tree
2010-08-13
marti
n
moved fft-helpers
commit
|
commitdiff
|
tree
2010-08-13
martin
fft-helpers
.
.
i'm try
i
n
g
to
write
one
f
ft
s
hift
f
unction
.
.
.
commit
|
commitdiff
|
tree
2010-08-12
martin
tried t
o
int
r
o
d
uce a
way
to switch fro
m
double
t
o single
.
.
.
commit
|
commitdiff
|
tree
2010-08-12
m
a
rtin
cuda-fft has
s
ome
u
nusable macros replace them with
.
.
.
commit
|
commitdiff
|
tree
2010-08-12
m
a
rtin
cud
.
c just
s
o
m
e
output formatting
commit
|
commitdiff
|
tree
2010-08-12
mar
t
in
I'm
u
n
de
c
ided
how to handle the multiple fft libs
.
.
.
.
commit
|
commitdiff
|
tree
2010-08-12
ma
r
tin
ex
p
ort t
y
po and
m
issing
vol depe
n
dency in lisp and
.
.
.
commit
|
commitdiff
|
tree
2010-08-12
martin
vol
.
asd missing
d
ependencies
commit
|
commitdiff
|
tree
2010-08-12
ma
r
tin
cuda-fft
.
l
isp c
o
m
m
ited to
l
ispp
a
ste
commit
|
commitdiff
|
tree
2010-08-12
ma
r
tin
moved fftw fun
c
ti
o
ns
fr
o
m
vol into fftw-fft
commit
|
commitdiff
|
tree
2010-08-12
m
a
rtin
cuda-fft
.
.
f
t
3-c
s
f-cuda
and i
f
t
3
.
.
with same se
m
antics
.
.
.
commit
|
commitdiff
|
tree
2010-08-11
martin
cud
a
-fft
.
.
w
rapper for
cufft, seems to work
.
commit
|
commitdiff
|
tree
2010-08-11
martin
c
u
da-fft 3d
fft b
u
t haven'
t
ch
e
cked the o
u
tp
u
t cuda
.
.
.
commit
|
commitdiff
|
tree
2010-08-11
martin
cuda
c t
e
st pr
o
gram
d
oes a 80x80x
8
0
complex
s
ing
l
e
.
.
.
commit
|
commitdiff
|
tree
2010-08-09
marti
n
ran the si
m
ulat
i
on over the full stack
.
t
h
at took 6900s
commit
|
commitdiff
|
tree
2010-08-09
martin
angular
.
.
re
s
ample the
psf to
t
he
s
ame resolution
as
.
.
.
commit
|
commitdiff
|
tree
2010-08-06
martin
wit
h
a s
m
all w
i
ndo
w
the 1um z-step is ok
a
y
commit
|
commitdiff
|
tree
2010-08-06
martin
psf will hav
e
to be resam
p
led
f
or
big windo
w
s
commit
|
commitdiff
|
tree
2010-08-06
martin
vector
.
.
v
2
* v2
.
for two c
o
mpon
e
nt double vecs
commit
|
commitdiff
|
tree
2010-08-06
martin
a
n
g
u
l
a
r
.
.
overlay spheres and lig
h
tfield
commit
|
commitdiff
|
tree
2010-08-06
mar
t
in
vol
.
l
isp
c
hange of
.
*
I s
u
btrac
t
ed the offsets
i
nstead
.
.
.
commit
|
commitdiff
|
tree
2010-08-06
mar
t
i
n
get-
l
cos-volume and start
e
d calc-light-
f
ield
commit
|
commitdiff
|
tree
2010-08-05
marti
n
delet
e
d
d
b
ind
commit
|
commitdiff
|
tree
2010-08-05
m
artin
d
isabl
e
volume che
c
k of
simple
x
in simplex-anne
a
l
commit
|
commitdiff
|
tree
2010-08-05
martin
tried t
o
ch
e
c
k the volume
o
f
the
simplex but
t
his doesn
.
.
.
commit
|
commitdiff
|
tree
2010-08-05
mart
i
n
bug in sim
p
lex-anneal
:
intr
o
duc
i
n
g
simple
-
array broke
.
.
.
commit
|
commitdiff
|
tree
2010-08-05
m
a
rtin
c
hanged angular-
i
llum so that psf is rei
n
i
tialized
commit
|
commitdiff
|
tree
2010-07-31
ma
r
tin
tried a bit
more wit
h
a
n
nealing
,
stil
l
d
o
e
s
n
'
t work
commit
|
commitdiff
|
tree
2010-07-31
martin
fix s
i
mple-arra
y
problem
s
in annealing code
commit
|
commitdiff
|
tree
2010-07-31
martin
a
ngular-psf remembers the caps now, speeds up f
r
om
.
.
.
commit
|
commitdiff
|
tree
2010-07-31
m
a
r
tin
typo
commit
|
commitdiff
|
tree
2010-07-31
m
a
rt
i
n
angular-intensit
y
-psf-m
i
nim
a
l
-
extent calculat
e
s
t
h
e
.
.
.
commit
|
commitdiff
|
tree
2010-07-30
m
a
rt
i
n
output
bfp mos
a
ic
f
rom
a
n
g
ular-il
.
.
commit
|
commitdiff
|
tree
2010-07-30
m
a
r
tin
re
m
oved th
e
disk from
the
c
ent
e
r of
the apo
t
ome sim
u
l
a
ti
o
n
.
.
.
commit
|
commitdiff
|
tree
2010-07-30
m
artin
w
e
nt through
a
ngular-illumina
t
ion an
d
verif
i
ed that
.
.
.
commit
|
commitdiff
|
tree
2010-07-29
marti
n
correc
t
ed apotome
.
lisp
commit
|
commitdiff
|
tree
2010-07-25
martin
moved mean-rea
l
p
a
rt into vol
.
lisp
commit
|
commitdiff
|
tree
2010-07-23
martin
start
e
d
implem
e
nting the exposu
r
e prediction f
o
r widefiel
d
.
commit
|
commitdiff
|
tree
2010-07-12
marti
n
macro def-convert to g
e
nera
t
e a b
u
nch
o
f con
v
ersion
.
.
.
commit
|
commitdiff
|
tree
2010-07-09
m
ar
t
in
some mo
r
e 2
d
stuf
f
.
*2
.
+2
i
n vol
.
li
s
p
commit
|
commitdiff
|
tree
2010-07-09
martin
i
m
pl
e
mented 2d fouriertransf
o
rm
commit
|
commitdiff
|
tree
2010-07-09
martin
p
r
epared some code
f
o
r incoherent
illumin
a
ti
o
n with
.
.
.
commit
|
commitdiff
|
tree
2010-07-08
m
arti
n
added code to r
e
ad a stack out of a ti
m
eseries (raw
.
.
.
commit
|
commitdiff
|
tree
2010-07-07
martin
add
e
d
deconvoluti
o
n prototy
p
e
commit
|
commitdiff
|
tree
2010-07-06
m
a
r
tin
I
added all the functions to ru
n
.
li
s
p
that I will n
e
ed
.
.
.
commit
|
commitdiff
|
tree
2010-07-05
martin
deleted s
o
me comments
f
rom raytrace
.
lisp
commit
|
commitdiff
|
tree
2010-07-05
mart
i
n
m
oved som
e
misc fun
c
tion
s
from run
.
li
s
p into vol
.
lisp
commit
|
commitdiff
|
tree
2010-07-05
martin
copied 3d
l
ine drawing
f
unctions from run
.
l
i
sp in
t
o
.
.
.
commit
|
commitdiff
|
tree
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