fixed upgrade script to also update with patch if applicable
tree4013ed5f5448aa75fede74342478cc7926e9e370
-rw-r--r-- 969 COPYRIGHT_AND_LICENSE
-rwxr-xr-x 22442 CategoryTreeMenu.js
-rwxr-xr-x 22817 DocumentTreeMenu.js
drwxr-xr-x - Documentation
-rw-r--r-- 14387 INSTALL
-rw-r--r-- 592 README
-rw-r--r-- 730 README.md
drwxr-xr-x - Tests
drwxr-xr-x - accounting
-rw-r--r-- 6906 acknowledge_license_cert.html
-rw-r--r-- 16737 acl_setup.php
-rw-r--r-- 27277 acl_upgrade.php
-rw-r--r-- 4279 admin.php
drwxr-xr-x - ccr
drwxr-xr-x - contrib
-rw-r--r-- 133 controller.php
drwxr-xr-x - controllers
drwxr-xr-x - custom
drwxr-xr-x - gacl
drwxr-xr-x - images
drwxr-xr-x - includes
-rw-r--r-- 890 index.php
drwxr-xr-x - interface
-rw-r--r-- 4850 ippf_upgrade.php
drwxr-xr-x - library
-rw-r--r-- 35147 license.txt
drwxr-xr-x - modules
drwxr-xr-x - myportal
drwxr-xr-x - patients
drwxr-xr-x - phpmyadmin
-rw-r--r-- 861 phpunit.xml
-rw-r--r-- 30010 setup.php
drwxr-xr-x - sites
-rw-r--r-- 12749 sl_convert.php
drwxr-xr-x - sql
-rw-r--r-- 3468 sql_patch.php
-rw-r--r-- 4085 sql_upgrade.php
drwxr-xr-x - templates
-rw-r--r-- 1263 version.php