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Updating Mauricio's email
2014-12-18
Francisco J
.
Ossand
o
n
Sta
n
d
A
loneBla
s
tPlus
:
Improved 'db_info' Algo
r
ithm ID
.
.
.
commit
|
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tree
2014-12-18
Fra
n
cisco J
.
Ossa
n
don
Added MYMETA
.
json
to
.
giti
g
nore
commit
|
commitdiff
|
tree
2014-09-01
Franc
i
sco J
.
O
ssandon
W
BCommandExts
.
t: Fixe
d
a pending TODO related to
commit
|
commitdiff
|
tree
2014-08-22
Francisco J
.
Os
s
andon
Removed empty
file Bio/To
o
ls
/
Run/
h
mmer
3
.
pm, which seems
commit
|
commitdiff
|
tree
2014-07-31
Francisco J
.
O
ssandon
M
e
rge b
r
anch 'master' of https://g
i
thub
.
com/bio
p
erl
.
.
.
commit
|
commitdiff
|
tree
2014-05-16
Fra
n
cis
c
o J
.
Ossandon
Merge pull
r
e
q
uest #71 from n
a
thanweek
s
/i
s
su
e
/bio-seqfeatur
e
.
.
.
commit
|
commitdiff
|
tree
2014-05-08
Francisco J
.
Ossandon
Me
r
ge
p
ull requ
e
st
#67
from stu2/master
commit
|
commitdiff
|
tree
2014-05-08
Francisco J
.
Oss
a
ndon
Merge pu
l
l request #68 from tsible
y
/readline-ret
u
rn
.
.
.
commit
|
commitdiff
|
tree
2014-04-30
Franc
i
sco J
.
Ossandon
Rem
o
teBlast_rpsbl
a
st
.
t: Fixed a few number of skipped
.
.
.
commit
|
commitdiff
|
tree
2014-04-29
Fran
c
isco J
.
Ossandon
Rem
o
te
B
last
.
t: Fixed several numbe
r
o
f skipp
e
d
t
ests,
commit
|
commitdiff
|
tree
2014-03-27
Francisco
J
.
Ossandon
Merge
pull re
q
u
e
st #66 from
n
atha
n
weeks
/
sqlite_collate_n
o
case
commit
|
commitdiff
|
tree
2014-02-28
Fran
c
isco
J
.
Ossan
d
on
Mass
i
ve check of fi
l
e open lines
.
C
h
anged b
a
reword
.
.
.
commit
|
commitdiff
|
tree
2014-02-25
Francisco J
.
Ossandon
Me
r
ge pull request #65 from
M
ar
t
inMcGrath/ma
s
ter
commit
|
commitdiff
|
tree
2014-01-28
Franci
s
co J
.
Ossandon
Merg
e
pu
l
l request #63 from yschensand
i
ego/
p
a
t
c
h-1
commit
|
commitdiff
|
tree
2014-01-28
Francisco J
.
Ossand
o
n
Merg
e
pull r
e
quest #64 fro
m
yschensandiego/patch-2
commit
|
commitdiff
|
tree
2013-12-31
Franci
s
co
J
.
Ossandon
CommandExts: My mistake, dou
b
l
e
-qu
o
tes in exe path
.
.
.
commit
|
commitdiff
|
tree
2013-12-30
Francisc
o
J
.
O
ssandon
StandAlone
B
last & CommandEx
t
s
: Apply do
u
b
le-quotes on
commit
|
commitdiff
|
tree
2013-12-28
Francisco J
.
Ossandon
I'm not sure if these programs will run on
Windo
w
s
now
commit
|
commitdiff
|
tree
2013-12-27
F
r
ancisco J
.
Ossandon
Window
s
us
e
'NUL
'
instead of '/d
e
v
/
null', so added
.
.
.
commit
|
commitdiff
|
tree
2013-12-27
Francisco J
.
Ossandon
Added
a
way to find the required files i
n
Windows using
.
.
.
commit
|
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|
tree
2013-12-27
Francisco J
.
Ossan
d
on
Hmmer: Prevent e
r
r
or
s
caused by the pr
e
sence of whites
p
ace
commit
|
commitdiff
|
tree
2013-12-27
Fr
a
n
c
is
c
o J
.
Ossandon
Bowtie
.
t: "qx/ulimit -n
3
>
&-/" does
not work as
in
t
ended
.
.
.
commit
|
commitdiff
|
tree
2013-12-19
Fran
c
isco J
.
Ossandon
C
h
an
g
ed "
c
at" to "
f
ind" t
o
be u
s
e
d as an e
x
ample of
commit
|
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|
tree
2013-12-19
Fra
n
cisco J
.
Ossand
o
n
RemoteBlast
.
t: Increased a
litt
l
e the
d
elay between
.
.
.
commit
|
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|
tree
2013-12-14
Francisco J
.
Ossandon
Assem
b
lerBas
e
.
p
m
:
I
n "
r
eset_parameters", added an interme
d
ia
.
.
.
commit
|
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2013-12-13
Fran
c
i
s
co J
.
O
s
s
andon
BWA
.
t,
B
o
wti
e
.
t, Maq
.
t & Samt
o
ols
.
t: Mo
v
ed tests
using
commit
|
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|
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2013-12-13
Francisco J
.
Ossandon
A
n
alysisFactor
y
_soa
p
.
t & A
n
alysis_soap
.
t: Changed tests
.
.
.
commit
|
commitdiff
|
tree
2013-12-12
F
r
ancisco J
.
Oss
a
nd
o
n
Build
.
PL & MYME
T
A
.
jso
n
: Added SOAP::Lite v
0
.
7
1
6 in
commit
|
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|
tree
2013-12-12
F
ranci
s
c
o
J
.
Ossandon
SoapEU-
f
u
nction
.
t: Update
d
expected versio
n
of
a
g
e
no
m
e
.
.
.
commit
|
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|
tree
2013-12-11
F
rancisco J
.
Ossandon
StandAlone
B
last
P
lus
.
pm
:
S
o
me temporal files were
not
.
.
.
commit
|
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|
tree
2013-12-11
F
r
ancisco J
.
Ossando
n
SABlastPlus
.
t: Added an additional
$fa
c
->cleanup fo
r
commit
|
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2013-12-11
Francisco J
.
Ossan
d
on
SABlastPlus
.
t: Some bl2seq t
e
st
s
were giving h
i
ts even
.
.
.
commit
|
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2013-12-11
Francisco J
.
Ossa
n
d
o
n
V
i
s
ta
.
t
: The 'ja
v
a
V
ista 2>&1' co
m
mand to determine
.
.
.
commit
|
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|
tree
2013-12-11
Francis
c
o J
.
Ossandon
FastTree
.
t & Neig
h
bor
.
t: Fix
e
d n
u
mb
e
r of skipped test
s
.
.
.
commit
|
commitdiff
|
tree
2013-12-11
F
r
ancisco J
.
Ossan
d
o
n
BEDTools
.
t:
M
o
v
ed the file-f
i
n
d
ing
l
ine
s
ins
i
de the
.
.
.
commit
|
commitdiff
|
tree
2013-12-11
Francisco J
.
Os
s
a
n
don
B
lat
.
t
:
F
ixed skipped tests numbe
r
and r
e
m
o
ved "$bl
a
t_p
r
esent
"
,
commit
|
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|
tree
2013-12-11
Fran
c
isco J
.
Ossando
n
Hyp
h
y/BatchFile
.
pm
:
Ch
a
nged @validvals[
$
i] to $validvals
.
.
.
commit
|
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|
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2013-12-11
Francisco J
.
O
s
s
a
ndo
n
MAFFT
.
pm: Fi
x
e
d
an uniniti
a
l
ized warn
i
ng f
r
om
commit
|
commitdiff
|
tree
2013-11-20
Francis
c
o J
.
Ossandon
Merge
p
ull
r
equest #54 from fjossan
d
on/
m
aster
commit
|
commitdiff
|
tree
2013-11-08
F
rancisco J
.
Ossa
n
don
Merge remo
t
e
branch 'u
p
stream/ma
s
ter'
i
nto tes
t
commit
|
commitdiff
|
tree
2013-09-22
Francis
c
o J
.
Ossandon
Merge remot
e
branch 'upstream/master
'
into
t
est
commit
|
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|
tree
2013-09-17
F
r
ancisco J
.
Ossandon
M
erge rem
o
te branch 'upstream/master' into test
commit
|
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|
tree
2013-04-18
F
rancisco J
.
Os
s
a
n
d
o
n
Merge remote bran
c
h
'
u
pstr
e
am/master'
commit
|
commitdiff
|
tree
2013-04-15
Fr
a
ncisc
o
J
.
Ossandon
Merge remo
t
e branch 'upstream/master'
commit
|
commitdiff
|
tree