descriptionBioPerl wrappers
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repository URLgit://
last changeTue, 13 Sep 2016 03:56:30 +0000 (12 22:56 -0500)
last refreshTue, 25 Oct 2016 06:32:29 +0000 (25 08:32 +0200)
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This is bioperl-run version 1.6.x, a developer release.

bioperl-run contain modules that provides a Perl interface to various bioinformatics applications. This allows various applications to be used with common BioPerl objects.

See the Changes file for more information about what is contained in here.


See the accompanying INSTALL file for details on installing bioperl-run.


Write down any problems or praise and send them to


Bug reports can be made using the GitHub Issues tracker for this distribution.

2016-09-13 Chris Fieldsfix for bug mentioned in master
2016-07-17 Chris Fieldsturn off Bio::DB::Sam for now
2016-07-17 Chris Fieldstry hacking in the samtools installation location
2016-07-17 Chris Fieldsadd a few more vetted dists
2016-07-17 Chris Fieldstweak travis, will have to play w/ apt to get dependenc...
2016-07-17 Chris Fieldsremove bad character
2016-07-17 Chris Fieldstry triggering travis
2016-07-17 Chris Fieldsgotta install bioperl first!
2016-07-17 Chris Fieldsadd travis-ci file
2016-07-07 Chris FieldsMerge pull request #40 from hettling/fast-bootstrap
2016-07-07 Chris FieldsMerge pull request #39 from hettling/master
2016-07-07 hettlingMerge branch 'master' of 40/head
2016-07-07 hettlingadding support for RAxML's fast bootstrap functionality...
2016-07-07 hettlingusing basename from File::Basename since test failed39/head
2015-05-28 Chris FieldsMerge pull request #15 from adsj/master
2015-05-26 Adam SjøgrenSupply TEMPLATE and SUFFIX for temporary query sequence... 15/head
5 years ago release-1-6-9 BioPerl-Run release 1.6.900
7 years ago run-1-6-1_001
7 years ago release-1-6-1
7 years ago release-1-6
7 years ago bioperl-1-6-RC2
7 years ago bioperl-1-6-RC1
7 years ago bioperl-1-6-RC1_15468
9 years ago bioperl-run-release-1-5-2
11 years ago bioperl-run-release-1-5-1
11 years ago bioperl-run-release-1-5-1-rc4
12 years ago bioperl-run-release-1-5-0-rc1
12 years ago bioperl-run-release-1-4-0
12 years ago bioperl-run-devel-1-3-01
13 years ago bioperl-run-release-1-2-2
13 years ago release-1-2-0
13 years ago bioperl-run-release-1-2-0
6 weeks ago master
2 years ago topic/issue11
4 years ago daisieh-adding_batchfile
7 years ago branch-1-6
11 years ago bioperl-run-branch-1-5-1
14 years ago branch-1-0-0
15 years ago branch-07-ensembl-120
15 years ago branch-07