descriptionBioPerl wrappers
homepage URLhttp://bioperl.org
repository URLgit://github.com/bioperl/bioperl-run.git
ownercjfields@bioperl.org
last changeSun, 17 Jul 2016 03:33:26 +0000 (16 22:33 -0500)
last refreshFri, 29 Jul 2016 04:40:16 +0000 (29 06:40 +0200)
content tags
add:
readme

Description

This is bioperl-run version 1.6.x, a developer release.

bioperl-run contain modules that provides a Perl interface to various bioinformatics applications. This allows various applications to be used with common BioPerl objects.

See the Changes file for more information about what is contained in here.

Installation

See the accompanying INSTALL file for details on installing bioperl-run.

Feedback

Write down any problems or praise and send them to bioperl-l@bioperl.org.

Bugs

Bug reports can be made using the GitHub Issues tracker for this distribution.

shortlog
12 days ago Chris Fieldsturn off Bio::DB::Sam for nowmaster
12 days ago Chris Fieldstry hacking in the samtools installation location
12 days ago Chris Fieldsadd a few more vetted dists
12 days ago Chris Fieldstweak travis, will have to play w/ apt to get dependenc...
12 days ago Chris Fieldsremove bad character
12 days ago Chris Fieldstry triggering travis
12 days ago Chris Fieldsgotta install bioperl first!
12 days ago Chris Fieldsadd travis-ci file
2016-07-07 Chris FieldsMerge pull request #40 from hettling/fast-bootstrap
2016-07-07 Chris FieldsMerge pull request #39 from hettling/master
2016-07-07 hettlingMerge branch 'master' of https://github.com/hettling... 40/head
2016-07-07 hettlingadding support for RAxML's fast bootstrap functionality...
2016-07-07 hettlingusing basename from File::Basename since test failed39/head
2015-05-28 Chris FieldsMerge pull request #15 from adsj/master
2015-05-26 Adam SjøgrenSupply TEMPLATE and SUFFIX for temporary query sequence... 15/head
2015-02-20 David PintoRaxml: use File::Spec->devnull() instead of our own...
...
tags
5 years ago release-1-6-9 BioPerl-Run release 1.6.900
6 years ago run-1-6-1_001
7 years ago release-1-6-1
7 years ago release-1-6
7 years ago bioperl-1-6-RC2
7 years ago bioperl-1-6-RC1
7 years ago bioperl-1-6-RC1_15468
9 years ago bioperl-run-release-1-5-2
10 years ago bioperl-run-release-1-5-1
10 years ago bioperl-run-release-1-5-1-rc4
12 years ago bioperl-run-release-1-5-0-rc1
12 years ago bioperl-run-release-1-4-0
12 years ago bioperl-run-devel-1-3-01
13 years ago bioperl-run-release-1-2-2
13 years ago release-1-2-0
13 years ago bioperl-run-release-1-2-0
...
heads
12 days ago master
21 months ago topic/issue11
3 years ago daisieh-adding_batchfile
6 years ago branch-1-6
10 years ago bioperl-run-branch-1-5-1
14 years ago branch-1-0-0
14 years ago branch-07-ensembl-120
14 years ago branch-07