descriptionBioPerl wrappers
homepage URL
repository URLgit://
last changeWed, 29 Mar 2017 16:21:06 +0000 (29 12:21 -0400)
last refreshThu, 24 Aug 2017 06:30:01 +0000 (24 08:30 +0200)
content tags


This is the home for bioperl-run, which contain modules that provides a Perl interface to various bioinformatics applications. This allows various applications to be used with common BioPerl objects.

See the Changes file for more information about what is contained in here.


See the accompanying INSTALL file for details on installing bioperl-run.


Write down any problems or praise and send them to


Bug reports can be made using the GitHub Issues tracker for this distribution.

2017-03-29 Brian OsborneFix docs for water/needle, match more recent versions... master
2017-03-20 Brian OsborneAdd documentation to show how to make HTML
2017-02-27 Brian OsborneMore explanation in docs
2017-02-26 Brian OsborneUpdate INSTALL
2017-02-25 Brian OsborneClarify that normal use means provide Sequence objects...
2016-12-19 Chris Fieldsshut off emboss and wise tests for now
2016-12-19 Chris Fieldsretry non-sudo containerized approach
2016-12-19 Chris Fieldstest using sudo, but maybe try using a local install...
2016-12-19 Chris Fieldsmake exec
2016-12-19 Chris Fieldsfix path, and turn off samtools
2016-12-19 Chris Fieldsinitial test install
2016-12-19 Chris Fieldsadd initial install script directory, with samtools...
2016-12-19 Chris Fieldsrun latest CPAN release of BioPerl
2016-12-19 Chris Fieldsshut off some tests so we can focus on a few failing...
2016-12-19 Chris Fieldsoops, forgot Changes but it is a minor release for...
2016-12-19 Chris Fieldsadd in code to add version to META filesrelease-1-7-1
8 months ago release-1-7-1
8 months ago release-1-7-0
6 years ago release-1-6-9 BioPerl-Run release 1.6.900
7 years ago run-1-6-1_001
8 years ago release-1-6-1
8 years ago release-1-6
8 years ago bioperl-1-6-RC2
8 years ago bioperl-1-6-RC1
8 years ago bioperl-1-6-RC1_15468
10 years ago bioperl-run-release-1-5-2
11 years ago bioperl-run-release-1-5-1
11 years ago bioperl-run-release-1-5-1-rc4
13 years ago bioperl-run-release-1-5-0-rc1
13 years ago bioperl-run-release-1-4-0
13 years ago bioperl-run-devel-1-3-01
14 years ago bioperl-run-release-1-2-2
4 months ago master
2 years ago topic/issue11
4 years ago daisieh-adding_batchfile
7 years ago branch-1-6
11 years ago bioperl-run-branch-1-5-1
15 years ago branch-1-0-0
16 years ago branch-07-ensembl-120
16 years ago branch-07