descriptionBioPerl wrappers
homepage URL
repository URLgit://
last changeSat, 16 Sep 2017 20:17:07 +0000 (16 15:17 -0500)
last refreshMon, 21 May 2018 10:33:10 +0000 (21 12:33 +0200)
content tags


This is the home for bioperl-run, which contain modules that provides a Perl interface to various bioinformatics applications. This allows various applications to be used with common BioPerl objects.

See the Changes file for more information about what is contained in here.


See the accompanying INSTALL file for details on installing bioperl-run.


Write down any problems or praise and send them to


Bug reports can be made using the GitHub Issues tracker for this distribution.

2017-09-16 Chris FieldsRT #122733: profile has to be renamed to run_profile... master
2017-09-16 Chris FieldsRT #94872: fix parameters (underscore should be dash)
2017-09-16 Chris Fieldsmore ancient artifacts
2017-09-16 Chris Fieldsskip some failing tests due to changes in Bowtie API...
2017-09-16 Chris FieldsRT #123058, skip if IPC::Run isn't installed
2017-09-16 Chris Fieldsremove ancient artifact
2017-09-15 Chris Fieldsskip if ClustalW wrapper isn't presentrelease-1-7-2
2017-09-14 Carnë DraugRemove Clustalw and TCoffee from list of dependencies
2017-09-14 Carnë DraugRemove Clustalw and TCoffee which were moved to separat...
2017-09-11 Chris Fieldsupdate Changes doc
2017-09-11 Chris Fieldsfit SABlast skip number
2017-09-11 Chris Fieldsadd Bio::FeatureIO as a recommended dist
2017-09-11 Chris Fieldsskip if no Bio::FeatureIO
2017-09-11 Chris Fieldsfix Phastcons and Match, has a req for Bio::FeatureIO
2017-09-11 Chris Fieldsfix pass-thru test count (off by one)
2017-09-11 Chris Fieldsbump run version
8 months ago release-1-7-2
17 months ago release-1-7-1
17 months ago release-1-7-0
7 years ago release-1-6-9 BioPerl-Run release 1.6.900
8 years ago run-1-6-1_001
9 years ago release-1-6-1
9 years ago release-1-6
9 years ago bioperl-1-6-RC2
9 years ago bioperl-1-6-RC1
9 years ago bioperl-1-6-RC1_15468
11 years ago bioperl-run-release-1-5-2
12 years ago bioperl-run-release-1-5-1
12 years ago bioperl-run-release-1-5-1-rc4
13 years ago bioperl-run-release-1-5-0-rc1
14 years ago bioperl-run-release-1-4-0
14 years ago bioperl-run-devel-1-3-01
8 months ago master
3 years ago topic/issue11
5 years ago daisieh-adding_batchfile
8 years ago branch-1-6
12 years ago bioperl-run-branch-1-5-1
15 years ago branch-1-0-0
16 years ago branch-07-ensembl-120
16 years ago branch-07