| commit | f663fcf668b586c9ededa5e2061ac7492c83ff45 | |
| author | Francisco J. Ossandon <fco.j.ossandon@gmail.com> | |
| Mon, 1 Sep 2014 04:12:14 +0000 (1 00:12 -0400) | ||
| committer | Francisco J. Ossandon <fco.j.ossandon@gmail.com> | |
| Mon, 1 Sep 2014 04:12:14 +0000 (1 00:12 -0400) | ||
| tree | f54d9167aa9dd587819cd19afaa14e1fb32e02fd | treesnapshot (tar.gz zip) |
| parent | 4766097230eaf5eb98368560efc928aac941f213 | commitdiff |
Bio/Location/Split.pm: Final fix for issue #76. From now on,
min_start/end and max_start/end subroutines will not order
sublocations by default, which was breaking cut by origin features
(had to add a little code from sub_Location to handle special cases
too). Also, fixed "end_pos_type" to return the last sublocation
value, because it was not working for partial reverse frameshifted
genes (like "complement(join(94468..94578,94578..>94889))"). Updated
several tests to reflect these changes.
min_start/end and max_start/end subroutines will not order
sublocations by default, which was breaking cut by origin features
(had to add a little code from sub_Location to handle special cases
too). Also, fixed "end_pos_type" to return the last sublocation
value, because it was not working for partial reverse frameshifted
genes (like "complement(join(94468..94578,94578..>94889))"). Updated
several tests to reflect these changes.
| Bio/Location/Split.pm | diffblobblamehistory | |
| t/SeqFeature/Location.t | diffblobblamehistory | |
| t/SeqFeature/LocationFactory.t | diffblobblamehistory | |
| t/SeqIO/Splicedseq.t | diffblobblamehistory |