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fixed improper generic parameter use in Tree.duplicateAs > Map, necessary
2016-05-28
Stephan S
a
a
l
f
eld
fixed i
m
p
r
oper generi
c
parameter
us
e
in Tr
e
e
.
duplicateAs
.
.
.
commit
|
commitdiff
|
tree
2016-02-06
Stephan Sa
a
l
f
eld
replaced ML
T
2 in elasti
g
m
o
nta
g
e a
n
d al
i
gnment b
y
TPS
commit
|
commitdiff
|
tree
2016-02-06
Steph
a
n Saalfeld
add
e
d depende
n
cy to jitk-tps-1
.
3
.
2 and m
a
naged trakem2_t
p
s
commit
|
commitdiff
|
tree
2016-01-09
Stephan Saalfeld
act
u
all
y
u
s
e mul
t
ipl
e
hypo
t
heses flag and ot
h
er
fixes
commit
|
commitdiff
|
tree
2016-01-08
S
tephan Saalfeld
enable multiple h
y
p
o
theses m
a
tc
h
i
ng
in TrakEM2's dis
t
ortion
.
.
.
commit
|
commitdiff
|
tree
2016-01-08
Stephan Saalfeld
enable multip
l
e hypotheses matching in Align back
w
ards
.
.
.
commit
|
commitdiff
|
tree
2016-01-08
Stephan Saalfeld
use mipmap thr
e
ads
n
umber property for para
l
le
l
in
t
ensity
.
.
.
commit
|
commitdiff
|
tree
2016-01-08
St
e
phan S
a
alfeld
rend
e
r intensity corrected images in a single
t
h
read
.
.
.
commit
|
commitdiff
|
tree
2016-01-08
Ste
p
han Saa
l
feld
preparing rel
e
ase pom-
t
rakem2-2
.
0
.
0,
V
ectorStr
i
ng-2
.
.
.
commit
|
commitdiff
|
tree
2015-09-04
St
e
phan S
a
alfe
l
d
nex
t
development
cycle
commit
|
commitdiff
|
tree
2015-09-03
St
e
phan Saalfe
l
d
pom-trakem
2
-1
.
4
.
0
commit
|
commitdiff
|
tree
2015-09-03
Stephan Saal
f
eld
added multi-threading
f
or
c
oefficie
n
ts matching
commit
|
commitdiff
|
tree
2015-09-03
Stephan S
a
alfeld
put
m
a
t
ch intensities commands
into w
o
rker
s
t
o
bl
o
ck
.
.
.
commit
|
commitdiff
|
tree
2015-09-02
St
e
phan Saa
l
feld
Workin
g
vers
i
o
n wit
h
out
multi-threading a
n
d bureaucrats
commit
|
commitdiff
|
tree
2015-09-02
St
e
phan S
a
alfeld
includ
e
d match
i
ntensities p
l
ugin, build w
i
th S
N
APSHOTS
.
.
.
commit
|
commitdiff
|
tree
2015-08-31
S
t
eph
a
n Sa
a
lf
e
ld
Merge
p
u
l
l
request #11 from hanslovsky/mast
e
r
commit
|
commitdiff
|
tree
2015-04-07
S
te
p
han
S
a
a
lfeld
next developmen
t
c
ycle
commit
|
commitdiff
|
tree
2015-04-07
Ste
p
h
an Saalfeld
release
p
om-trak
e
m
2
-1
.
3
.
3
commit
|
commitdiff
|
tree
2015-03-26
Stepha
n
S
a
alfel
d
re-rel
e
ase
pom-trake
m
2-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-24
Stephan Saal
f
e
ld
next development cycle
commit
|
commitdiff
|
tree
2015-03-24
Ste
p
han
S
aalfeld
re-releas
e
pom-trak
e
m2-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-19
S
t
e
p
h
a
n Saalfeld
next
d
evelopment cycle (problem with Eclipse
K
epler
.
.
.
commit
|
commitdiff
|
tree
2015-03-19
Stephan Saalfeld
relea
s
e pom-trak
e
m2-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-07
Stephan Sa
a
lfeld
n
e
xt development cycl
e
commit
|
commitdiff
|
tree
2015-03-07
Stephan Saal
f
eld
release
commit
|
commitdiff
|
tree
2015-02-14
Stephan Saal
f
eld
n
ext
d
evelop
m
ent cycle
commit
|
commitdiff
|
tree
2015-02-14
S
tep
h
an Saalfeld
r
elease
commit
|
commitdiff
|
tree
2015-02-14
Stephan
S
aalfeld
release
commit
|
commitdiff
|
tree
2015-01-14
St
e
p
h
a
n
Saalfel
d
a
dded getters for ml
s
2 p
,
q, an
d
w
commit
|
commitdiff
|
tree
2015-01-12
Stephan Saalfe
l
d
Added Eric Tr
a
utm
a
n's
c
h
eck for number o
f
threads to
.
.
.
commit
|
commitdiff
|
tree
2015-01-12
Stephan S
a
a
l
f
eld
Fixed Value2N
o
iseFilter
m
ax ex
p
or
t
commit
|
commitdiff
|
tree
2014-12-19
Stephan
S
aal
f
e
ld
bump t
o
next de
v
e
l
opment cycl
e
commit
|
commitdiff
|
tree
2014-12-19
Ste
p
han Saalfeld
M
erge r
e
mote-trackin
g
branch 'origin'
commit
|
commitdiff
|
tree
2014-12-19
Step
h
an Saalfeld
reproducible bu
i
l
d
pom-tr
a
kem2
-
1
.
1
.
2
commit
|
commitdiff
|
tree
2014-12-19
S
tephan
Sa
a
lfeld
separ
a
ted CoordinateTran
s
f
o
rm parts of lensco
r
r
e
c
tion
.
.
.
commit
|
commitdiff
|
tree
2014-12-18
Steph
a
n Saalfeld
added
m
u
l
t
i
p
le le
v
el downsampling for ColorProcessor
commit
|
commitdiff
|
tree
2014-12-17
St
e
phan Saalfeld
bump to next devel
o
pment
cycle
commit
|
commitdiff
|
tree
2014-12-17
Stephan Saalfeld
second try to make reproducible build pom-t
r
ak
e
m2-1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-17
S
tephan Saalfeld
Merge bra
n
ch 'intensity
-
tran
s
form
'
commit
|
commitdiff
|
tree
2014-12-13
Stephan
S
a
alfeld
b
ump to
next devel
o
p
m
ent
c
ycle
commit
|
commitdiff
|
tree
2014-12-13
S
tephan
S
aalf
e
l
d
reprod
u
cible build pom
-
trakem2-1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalfeld
Merge remote-tracki
n
g
bran
c
h 'o
r
ig
i
n/m
a
ster'
commit
|
commitdiff
|
tree
2014-12-12
Steph
a
n Sa
a
lfeld
bum
p
to new deve
l
opme
n
t cycl
e
commit
|
commitdiff
|
tree
2014-12-12
S
tephan S
a
alfeld
reprod
u
cible build pom-trakem2
-
1
.
1
.
0
commit
|
commitdiff
|
tree
2014-12-12
St
e
phan Saa
l
feld
Merge branch 'mas
t
er' of git
h
ub
.
com:tr
a
kem2/TrakEM2
commit
|
commitdiff
|
tree
2014-12-12
Stepha
n
S
a
alfeld
added
V
a
lueToNo
i
se filt
e
r which fills
a g
i
ven intensity
.
.
.
commit
|
commitdiff
|
tree
2014-11-12
Step
h
an Saalfeld
Up
d
ate R
E
A
D
ME
commit
|
commitdiff
|
tree
2014-11-12
Ste
p
han Saalfeld
Update README
commit
|
commitdiff
|
tree
2014-11-07
Stephan Saalfeld
M
erge
b
ran
c
h 'master' into coordXfmFix
commit
|
commitdiff
|
tree
2014-11-07
St
e
phan Saal
f
eld
Merge remote-track
i
ng
b
ranch 'origin/intensity-
t
r
a
nsform'
commit
|
commitdiff
|
tree
2014-10-04
Stephan
S
aalf
e
ld
added RobustNormalizedLocalContra
s
tFilter,
f
ast
a
nd
.
.
.
commit
|
commitdiff
|
tree
2014-10-04
Stephan Saalfeld
Change
d
default bl
o
ck rad
i
us
i
n Nor
m
al
i
zeL
o
calContrast
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Ste
p
han Saalfeld
a
u
to-removed
s
o
me tra
i
ning whi
t
es
p
ac
e
s
commit
|
commitdiff
|
tree
2014-10-02
Ste
p
han Saalf
e
l
d
added r
u
n method th
a
t does not
n
eed a worker
f
o
r easier
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Ste
p
han Sa
a
lfeld
auto-r
e
mov
e
d
some trailing wh
i
tespaces
commit
|
commitdiff
|
tree
2014-10-02
St
e
p
h
an
Saalfeld
parallelized i
n
tersect
i
on tests for pairOverlappingTiles
commit
|
commitdiff
|
tree
2014-10-02
St
e
phan Saalfel
d
auto-finalize cons
t
ant properties
and
pa
r
ameters in
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
S
t
ephan
S
a
a
lfeld
threadsafe Utils
.
e
n
sure(File)
commit
|
commitdiff
|
tree
2014-06-06
Stephan Saal
f
eld
fixed bug in generation o
f
alphamask
s
commit
|
commitdiff
|
tree
2014-06-05
Step
h
an
Saal
f
eld
e
x
t
e
rnalized Distortion
C
orrection
.
r
u
n
t
o enable calling
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
Stepha
n
Saalfeld
Eclips
e
autu-
c
osmetics in Dis
t
o
r
tionCorrection
commit
|
commitdiff
|
tree
2014-05-19
S
t
e
p
han
Saalfeld
Merge branch 'master' into intensity-transform
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saalfel
d
use standar
d
writer for
c
o
o
rdinat
e
transforms
commit
|
commitdiff
|
tree
2014-05-19
Steph
a
n
S
aalfeld
depen
d
on javax
.
media for jai
commit
|
commitdiff
|
tree
2014-05-19
S
t
ephan
Saalfeld
ad
d
ed methods for downsa
m
pling more th
a
n o
n
e l
e
vel
commit
|
commitdiff
|
tree
2013-10-10
Step
h
a
n Saalfeld
replaced
p
l
u
g
i
ns
.
con
f
ig
with the F
i
ji version
commit
|
commitdiff
|
tree
2013-09-20
St
e
phan Saalf
e
l
d
Merge branch 'mas
t
er
'
o
f ss
h
://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Stephan
S
aalfeld
Merg
e
branch 'master' of ssh://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Steph
a
n Saalf
e
ld
Para
l
lel
p
airO
v
erlappingTiles did
n
ot work and re
p
ort
e
d
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
S
t
ephan Saalfeld
Merge branch 'master'
o
f ssh:/
/
repo
.
or
.
cz/s
r
v/git
/
trakem2
commit
|
commitdiff
|
tree
2013-09-16
Stephan Sa
a
lfeld
re-add
e
d legacy opt
i
mi
z
er for spring m
e
shes, this would
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
St
e
phan Saa
l
feld
T2-
N
IT/p
o
m
.
xml can inherit ver
s
i
o
n num
b
e
r
f
r
om parent
commit
|
commitdiff
|
tree
2013-08-14
Step
h
an Saa
l
feld
added missing dependencies
t
o java3d c
o
re-utils a
n
d
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
S
tephan Saa
l
feld
s
e
t parent pom of
p
om-trakem2 to pom-fij
i
.
2
.
0
.
0-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan S
a
alfel
d
Merge bran
c
h 'spring-mesh2' of ssh://re
p
o
.
o
r
.
cz/s
r
v
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
Ste
p
han Saalfeld
M
e
r
g
e branch
'
mast
e
r'
into spr
i
ng-mesh2
commit
|
commitdiff
|
tree
2013-08-12
St
e
phan Saalfeld
rais
e
d mpicbg depe
n
dency vers
i
on to 0
.
6
.
1-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stepha
n
Saalfe
l
d
rai
s
ed depen
d
ency to
S
imple_N
e
u
ri
t
e
_Tracer to 2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
Ste
p
han S
a
alfeld
M
erge branch 'master
'
into spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saal
f
el
d
a
dded comments and
a
uto-fina
l
ize
in DistortionCo
r
rec
t
i
on/NLT
commit
|
commitdiff
|
tree
2013-08-12
Stepha
n
Saa
l
fel
d
a
d
d
ed mpicbg
.
version as mave
n
property,
commit
|
commitdiff
|
tree
2013-05-06
Stephan
S
aalfe
l
d
trac
k
m
o
ve
o
f the
im
g
lib1 depend
e
ncy
commit
|
commitdiff
|
tree
2013-04-22
Stephan Saal
f
eld
M
erge branch 'master'
i
nto
s
prin
g
-m
e
sh2
commit
|
commitdiff
|
tree
2013-03-05
Stephan S
a
alfeld
Merge branc
h
'master' into spring-mesh2
commit
|
commitdiff
|
tree
2013-01-18
Stephan Saalfeld
use arraylist wh
e
re arraylists ar
e
ret
u
r
ned
commit
|
commitdiff
|
tree
2013-01-16
Stephan S
a
a
l
f
eld
adjust mpic
b
g spring-mesh2
w
hich needs
l
ess dampi
n
g
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saalfeld
Fixed bug in
Patch
.
getFullCoordi
n
ate
T
ransfor
m
that
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
St
e
phan
S
aalfeld
Chan
g
e
d
fixe
d
Pa
t
c
h
e
s
/Tiles input col
l
ecti
o
n
t
o
S
et
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saalfeld
Pair c
o
nstr
u
c
t
or has to
b
e public
commit
|
commitdiff
|
tree
2013-01-10
Stephan Saa
l
f
eld
f
o
r
g
o
t
to set
i
sA
l
igned flag in elastic laye
r
alignment
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Stephan Saal
f
eld
elastic montag
e
param mus
t
be
p
ublic
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saalf
e
ld
added Patch
.
ge
t
FullCo
r
dinateTransform() whic
h
generates
a
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saa
l
feld
*
removed isAligned
f
rom A
b
s
t
ract
P
aram
c
lass
commit
|
commitdiff
|
tree
2013-01-05
Stephan Saalfe
l
d
877: it is
legal
f
or
l
ayerTh
i
ng t
o
be null
commit
|
commitdiff
|
tree
2012-12-21
S
t
epha
n
Saalfeld
C
o
rr
e
cted several long-standing issues with SIFT-linear and
commit
|
commitdiff
|
tree
2012-12-19
St
e
phan Saalfeld
Re
g
ularizedLayerAlig
n
ment got mo
r
e fl
e
x
i
b
l
e
A
PI methods and
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
clearing
c
ac
h
e in layer a
l
ignment must be default tr
u
e
commit
|
commitdiff
|
tree
2012-12-19
S
t
ephan
S
aal
f
eld
print optimiz
e
r results and
do n
o
t
prin
t
"matching
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saa
l
feld
do not remove e
m
pty lay
e
rs i
n
la
y
er
a
lignment
commit
|
commitdiff
|
tree
2012-11-07
St
e
phan Saa
l
feld
fixed v
e
rsio
n
number of mpicbg dependency
commit
|
commitdiff
|
tree
next