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auto-removed some training whitespaces
2014-10-02
S
t
ephan Saalfeld
a
u
to-
r
emov
e
d some t
r
aining whitespaces
commit
|
commitdiff
|
tree
2014-10-02
S
t
ep
h
an Saalfeld
added run method
that does
not need a worker for easier
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saa
l
feld
auto
-
removed some trailing whitespaces
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saalfeld
parall
e
lized in
t
erse
c
tion tes
t
s
f
or
pairOverlappingTiles
commit
|
commitdiff
|
tree
2014-10-02
S
tephan Saalfeld
auto-final
i
z
e
constant propert
i
es and
parameters in
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan
S
aalfeld
threadsafe Utils
.
ensu
r
e(Fil
e
)
commit
|
commitdiff
|
tree
2014-06-06
Stephan Sa
a
lfeld
fixed bug in generat
i
on of alph
a
masks
commit
|
commitdiff
|
tree
2014-06-05
Stephan Saalfel
d
externalize
d
DistortionCor
r
ection
.
run to enabl
e
c
a
ll
i
ng
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
S
t
ephan Saalfeld
Ecl
i
pse autu-co
s
metics in DistortionCo
r
rection
commit
|
commitdiff
|
tree
2014-05-19
Steph
a
n
S
aalfeld
Merge branch
'
master' into intensity-trans
f
orm
commit
|
commitdiff
|
tree
2014-05-19
Ste
p
h
a
n S
a
alfeld
use s
t
anda
r
d w
r
ite
r
for
coordinatet
r
a
n
sforms
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saalf
e
l
d
d
e
pend on javax
.
media for
jai
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saalfeld
a
d
ded m
e
thod
s
for dow
n
s
a
mpl
i
ng more than one l
e
vel
commit
|
commitdiff
|
tree
2013-10-10
S
t
eph
a
n
S
aalf
e
ld
replaced plugin
s
.
config
w
ith the Fiji version
commit
|
commitdiff
|
tree
2013-09-20
Stephan
Saalfeld
Merge branch 'master' of ss
h
://rep
o
.
or
.
cz/s
r
v/git
/
trakem2
commit
|
commitdiff
|
tree
2013-09-19
Stephan Saalfeld
M
e
rge branc
h
'm
a
ster' of ssh://
r
epo
.
or
.
c
z/srv/
g
it/trakem2
commit
|
commitdiff
|
tree
2013-09-19
S
tephan Saalf
e
ld
Parallel pai
r
Overl
a
ppingT
i
l
es d
i
d not wor
k
and r
e
ported
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saa
l
feld
Merge bran
c
h 'master' of
s
s
h:/
/
re
p
o
.
or
.
cz/sr
v
/git/trakem2
commit
|
commitdiff
|
tree
2013-09-16
S
tephan Saa
l
feld
re-added legacy op
t
imizer
f
or
sp
r
ing meshes
,
this would
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan Sa
a
lfe
l
d
T2-NIT/pom
.
xml
c
an
inhe
r
it versio
n
numb
e
r from parent
commit
|
commitdiff
|
tree
2013-08-14
Stephan Saalfeld
adde
d
missing
d
epe
n
d
encie
s
to java3d core-utils an
d
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
Stephan Saalfeld
set paren
t
p
o
m
o
f pom-trak
e
m2 t
o
po
m
-fiji
.
2
.
0
.
0-SNAPSH
O
T
commit
|
commitdiff
|
tree
2013-08-12
Stephan
S
aalfeld
Merge branch 'spring-mesh2' o
f
ssh://repo
.
o
r
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
Steph
a
n Saalfe
l
d
Merge
branch 'master' into spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
S
tephan Saalfeld
rais
e
d
mpicbg depend
e
n
c
y version to 0
.
6
.
1-SNAPSH
O
T
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalf
e
ld
r
ais
e
d depende
n
cy to Simple_Neurite_Tracer to 2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
Merge branch 'master'
i
nto s
p
ring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Step
h
an Saalfeld
added c
o
mm
e
n
t
s
a
nd auto-
f
inal
i
ze in DistortionC
o
rre
c
tion/N
L
T
commit
|
commitdiff
|
tree
2013-08-12
Stephan S
a
al
f
eld
added mpi
c
bg
.
vers
i
on as maven prop
e
rty,
commit
|
commitdiff
|
tree
2013-05-06
Stephan
S
aalfeld
track move o
f
the
i
mglib
1
dependency
commit
|
commitdiff
|
tree
2013-04-22
S
t
ep
h
an Saalf
e
ld
Merge
b
ran
c
h 'master' into spring-mesh2
commit
|
commitdiff
|
tree
2013-03-05
Stephan Saalfeld
Merge branch 'master' in
t
o spring-mesh
2
commit
|
commitdiff
|
tree
2013-01-18
Stepha
n
Saalfel
d
u
se
a
rraylist
w
here arr
a
yli
s
ts
are returne
d
commit
|
commitdiff
|
tree
2013-01-16
St
e
phan Sa
a
lfeld
adjust mpicbg spring-mesh2 which needs less damping
commit
|
commitdiff
|
tree
2013-01-11
St
e
phan Saalfeld
Fi
x
ed bug
in P
a
tch
.
getF
u
llCoordinateTransform that
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Ste
p
han Saa
l
feld
Changed
fixedPat
c
hes/Til
e
s input col
l
ection to
Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Steph
a
n Saalfeld
Pai
r
c
o
nstru
c
tor has
t
o be pu
b
l
i
c
commit
|
commitdiff
|
tree
2013-01-10
Stephan Saalfeld
forg
o
t to
se
t
isAligned flag
i
n elastic layer alignment
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Stephan Saalfeld
elastic monta
g
e para
m
mus
t
be publi
c
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saalfeld
adde
d
Patch
.
getFullC
o
rdinateTransfo
r
m() which generates a
commit
|
commitdiff
|
tree
2013-01-07
Stephan Sa
a
lfeld
*
remo
v
ed
isAligned from Abstract Param clas
s
commit
|
commitdiff
|
tree
2013-01-05
Stephan Sa
a
lfeld
877: it is legal for lay
e
rThing to be null
commit
|
commitdiff
|
tree
2012-12-21
St
e
phan Sa
a
lfeld
Corre
c
ted several l
o
ng-standin
g
issues with SIFT-linea
r
and
commit
|
commitdiff
|
tree
2012-12-19
S
tep
h
an Saa
l
fe
l
d
RegularizedLayerAlignm
e
nt got more
f
lexible API method
s
and
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
clearing cach
e
in layer alignm
e
nt
m
u
s
t be defau
l
t true
commit
|
commitdiff
|
tree
2012-12-19
St
e
phan Saalfeld
prin
t
optimizer
results
and do not pri
n
t
"ma
t
ching
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saal
f
eld
do n
o
t remove empty layers in layer alignment
commit
|
commitdiff
|
tree
2012-11-07
S
t
ephan Saalfeld
f
ixed version number of mpicbg dependen
c
y
commit
|
commitdiff
|
tree
2012-11-07
Stepha
n
Saalfeld
fixe
d
merge error: moved
R
obustNormalizeLocalContrast
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
Stephan Saal
f
eld
multi-threaded
R
obustN
o
rmal
i
z
e
Loc
a
lContrast ma
i
n
bo
d
y
commit
|
commitdiff
|
tree
2012-09-01
S
tepha
n
Saalfeld
Rem
o
ved Dis
p
layCanvas
.
setDrawing
C
olor(int,int,boolean
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
S
t
ephan Saalfel
d
Merge
b
ranch 'm
a
ster'
of
ssh://repo
.
or
.
c
z
/srv/git/
t
rakem2
commit
|
commitdiff
|
tree
2012-08-31
St
e
phan Sa
a
lfeld
added experimental
l
ocal c
o
n
t
r
ast
e
n
h
ancer Rob
u
st
N
ormalizeL
o
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
Stepha
n
Saalfeld
removed obsolete cho
i
ce from align layers dialog
commit
|
commitdiff
|
tree
2012-06-26
Ste
p
han
Saalfeld
s
pl
i
t elastic mon
t
a
ge d
i
alog for block matching and
use
commit
|
commitdiff
|
tree
2012-06-26
Stephan S
a
al
f
el
d
M
e
r
ge
branch 'master' of ss
h
:
/
/
repo
.
or
.
c
z
/srv/g
i
t/trak
e
m2
commit
|
commitdiff
|
tree
2012-06-26
S
t
ephan Saalfeld
u
s
e and do not ignore
alpha
in helpe
r
method
commit
|
commitdiff
|
tree
2012-06-21
Stephan Saalfeld
use t
h
e new sequential dialogs in
"montage" for a selection
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
Stephan
S
aalfeld
M
erge branch
'master' of ssh://rep
o
.
or
.
cz/s
r
v/git/trakem2
commit
|
commitdiff
|
tree
2012-06-20
Ste
p
han Saalfel
d
fi
x
ed range chec
k
in
la
y
er alignm
e
nt
commit
|
commitdiff
|
tree
2012-06-14
Stephan S
a
alfeld
fi
x
ed conditi
o
n
c
h
eck
i
n Al
i
gn Layer
s
for regul
a
rization
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saa
l
feld
Merge branch 'ma
s
ter
'
into regularized-affi
n
e
commit
|
commitdiff
|
tree
2012-06-08
Step
h
an Saalfeld
d
o
not c
o
ns
i
de
r
disconne
c
t
ed tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
Mer
g
e
b
ranch 'r
e
gula
r
ize
d
-affine' of ss
h
://repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
Stephan
S
aalfeld
pre-align
graphs and match only
o
v
er
l
apping tiles
commit
|
commitdiff
|
tree
2012-06-08
S
tep
h
an Sa
a
lfeld
pre-ali
g
n
graphs a
n
d match only overla
p
ping
t
iles
commit
|
commitdiff
|
tree
2012-06-08
St
e
p
h
a
n
Saalfeld
initializ
e
Tile models and not only patches
i
n alignGraphs
commit
|
commitdiff
|
tree
2012-06-08
Stephan S
a
alfeld
c
hanged
a
lignGraphs inpu
t
collections from
Set
t
o
It
e
rable
commit
|
commitdiff
|
tree
2012-06-08
Steph
a
n Saa
l
feld
mak
e
sure
that static p
a
ra
m
eters do no
t
ove
r
ride ea
c
h
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfeld
remove sp
u
rious import
commit
|
commitdiff
|
tree
2012-06-05
Stepha
n
Saalfel
d
workaround Oracle javac generics issue
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfeld
multi
-
layer-mosaic
u
s
es Param/ParamOptim
i
ze
.
set
u
p(Stri
n
g
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan
S
aalf
e
ld
mo
n
tag
e
la
y
e
r
s
u
s
e
s
ParamOp
t
imize
.
setup instead of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Ste
p
han Saalfel
d
do not fix
a
random tile if
none
i
s fixed
commit
|
commitdiff
|
tree
2012-05-29
St
e
phan Saalfeld
Condens
e
d
.
mailmap
commit
|
commitdiff
|
tree
2012-05-29
S
t
epha
n
Saalfeld
Adde
d
.
mail
m
ap
commit
|
commitdiff
|
tree
2012-05-21
Stephan Sa
a
lfeld
Me
r
g
e branch '
m
aster' in
t
o
r
egularized-a
f
fine
commit
|
commitdiff
|
tree
2012-05-21
Step
h
an
Saalf
e
ld
a
dded *None*
fiel
d
to layer ran
g
e
r
ef
e
rence selection
commit
|
commitdiff
|
tree
2012-05-21
S
t
ephan Sa
a
l
f
eld
s
plit Align
.
Param
O
pt
i
m
i
ze dialogs in
pie
c
es
that fit
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
added G
e
neric
A
ffine
T
ile2D
commit
|
commitdiff
|
tree
2012-05-21
Stephan Sa
a
lfeld
generalized A
b
str
a
ctAffineTile2D g
e
ner
i
c par
a
meter
commit
|
commitdiff
|
tree
2012-05-15
St
e
phan Saalfeld
tr
a
c
k
r
e
factoring i
n
mpicbg
.
commit
|
commitdiff
|
tree
2012-05-09
S
t
e
phan
Saalfeld
a
dd
e
d
r
egula
r
ized
a
ffine layer alignment,
commit
|
commitdiff
|
tree
2012-03-28
Stephan Sa
a
lfe
l
d
fix
e
d
create
I
mage()
:
u
se prem
u
l
t
iplied r
a
s
t
er
commit
|
commitdiff
|
tree
2012-03-27
St
e
phan Saalfeld
d
o
not print the m
i
p
m
a
p scal
e
commit
|
commitdiff
|
tree
2012-03-27
S
te
p
han S
a
alfeld
for now
,
do not u
s
e
p
r
e-mult
i
plied alph
a
since i
t
does
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saal
f
eld
Fix
e
d wrong
p
ainting
of
Patch
e
s when using a downsampler
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
S
tephan Saalfel
d
D
o
w
n
s
a
mplerMi
p
M
a
ps no
w
c
o
n
sistentl
y
uses combined downsampli
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Sa
a
lfeld
fi
x
ed Downsamp
l
erMipMaps blending merged alpha into
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
S
tephan Saal
f
eld
Downsampler
tes
t
still sho
w
s it being sign
i
fi
c
antly
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
Fixed Down
s
ampler: rang
e
c
h
eck in byte conversion was
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan
S
a
a
l
f
eld
Merg
e
bran
c
h 'integral'
o
f ssh://repo
.
or
.
c
z/
s
r
v/git
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
Stephan S
a
alfeld
added missing package to Fa
k
e
f
ile
commit
|
commitdiff
|
tree
2012-03-08
St
e
phan Saa
l
feld
Merge
b
r
a
nch '
m
aster' of ssh://repo
.
or
.
cz/srv
/
git/t
r
a
k
em2
commit
|
commitdiff
|
tree
2012-03-08
Stephan Sa
a
lfeld
fix
l
ocal scale esti
m
a
te
commit
|
commitdiff
|
tree
2012-03-07
S
t
ephan Saal
f
eld
added getLocalScale(
x
,y
)
method to Patch
commit
|
commitdiff
|
tree
2012-03-07
Ste
p
han Saa
l
feld
patc
h
does not propag
a
te N
o
nInvertibleMode
l
Exce
p
tion
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
Ste
p
han Sa
a
lfeld
Merge
b
ranc
h
'master'
of ssh://repo
.
or
.
cz/srv/git
/
trakem2
commit
|
commitdiff
|
tree
2012-03-07
S
tephan Saalfeld
added metho
d
s t
o
fetch the closest triangl
e
of a
t
ransform
.
.
.
commit
|
commitdiff
|
tree
2012-02-27
S
t
ephan Saalfeld
in the
m
i
dd
l
e o
f
.
.
.
amen
d
with fin
a
l comm
i
t
commit
|
commitdiff
|
tree
next