repo.or.cz
/
trakem2.git
/
search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
first
·
prev
·
next
Merge remote-tracking branch 'origin/master'
2014-12-12
Stephan Sa
a
lfel
d
Merge re
m
o
t
e-tracking branch
'origin/master'
commit
|
commitdiff
|
tree
2014-12-12
S
tephan Saalfeld
bump
to
new de
v
e
l
o
p
m
ent cycle
commit
|
commitdiff
|
tree
2014-12-12
Steph
a
n Saalfeld
reproduc
i
ble
b
uild
p
om-
t
rakem2-1
.
1
.
0
commit
|
commitdiff
|
tree
2014-12-12
Stephan
S
a
alfel
d
Merge branch 'master' of github
.
c
o
m:trakem2/Tra
k
EM2
commit
|
commitdiff
|
tree
2014-11-07
S
t
ephan Saalfel
d
Merge branc
h
'
m
a
s
ter' into coordXfmFi
x
commit
|
commitdiff
|
tree
2014-11-07
Stepha
n
Saal
f
eld
Merge remote-tracking
b
ranch
'
origin/intensity-t
r
ansfo
r
m'
commit
|
commitdiff
|
tree
2014-10-04
Stephan
S
aalfe
l
d
added RobustNo
r
malizedLo
c
al
C
o
n
trastFilter, fast and
.
.
.
commit
|
commitdiff
|
tree
2014-10-04
St
e
phan Saalfeld
Changed default
bl
o
c
k
rad
i
us in
N
ormalizeL
o
calContras
t
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Steph
a
n Saalfeld
auto-re
m
o
ved some training whitespaces
commit
|
commitdiff
|
tree
2014-10-02
Stephan Sa
a
lf
e
ld
ad
d
e
d run
m
et
h
od that
d
oes not need a wor
k
e
r
for easier
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Step
h
an S
a
alfeld
aut
o
-removed some trailing whitespace
s
commit
|
commitdiff
|
tree
2014-10-02
Stephan Sa
a
lfeld
paral
l
elized intersecti
o
n tes
t
s for pa
i
r
OverlappingTile
s
commit
|
commitdiff
|
tree
2014-10-02
St
e
phan Saalfeld
auto-finalize
c
onsta
n
t properties
an
d
para
m
ete
r
s
in
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saalfe
l
d
threadsafe Utils
.
ensur
e
(
F
ile)
commit
|
commitdiff
|
tree
2014-06-06
Stephan Saalfeld
fixed bug
in generation of
alphamasks
commit
|
commitdiff
|
tree
2014-06-05
Stephan Saalfeld
exte
r
nalized
D
istortionCorrection
.
run to e
n
able calling
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
Stephan Saa
l
fel
d
Eclipse
a
u
t
u-cosme
t
ics
i
n DistortionCorrection
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saalfel
d
Me
r
ge br
a
n
c
h
'mas
t
e
r' into inte
n
sity-
t
ransform
commit
|
commitdiff
|
tree
2014-05-19
Stephan Sa
a
lfel
d
u
s
e
standard wri
t
er f
o
r coordin
a
tetransfo
r
m
s
commit
|
commitdiff
|
tree
2013-10-10
S
t
ephan
S
aalfeld
replaced plug
i
ns
.
config with the Fiji version
commit
|
commitdiff
|
tree
2013-09-20
Ste
p
h
a
n S
a
alfeld
M
e
rge
b
ranch 'mast
e
r' of ssh://r
e
p
o
.
or
.
cz/srv/
g
it/trake
m
2
commit
|
commitdiff
|
tree
2013-09-19
Ste
p
han Saal
f
eld
Merge
br
a
nch
'master' of
s
sh://repo
.
or
.
cz/
s
rv/git/
t
ra
k
em2
commit
|
commitdiff
|
tree
2013-09-19
S
t
ephan Saalfeld
P
a
r
allel pairOverlapp
i
ngTiles d
i
d not wo
r
k an
d
rep
o
rted
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
S
teph
a
n
Saalfeld
M
erge branc
h
'
master' of
s
sh:/
/
r
epo
.
or
.
cz/srv/git/t
r
akem2
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saalfeld
re-added l
e
ga
c
y optimizer fo
r
spring meshes, this would
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
S
tephan Saalfeld
T2-NIT/po
m
.
xml can inherit versio
n
number fr
o
m parent
commit
|
commitdiff
|
tree
2013-08-14
Stephan Saalfeld
added
missing dependenci
e
s to java3d co
r
e
-
utils an
d
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
Stephan Saalfel
d
set parent
pom of pom-trak
e
m
2 t
o
pom-f
i
j
i
.
2
.
0
.
0-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
S
tephan Saalfeld
Me
r
ge branch 'spring
-
m
e
sh2' of ssh:
/
/repo
.
or
.
cz/
s
rv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfel
d
Merge
branc
h
'master' into spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
raised mpicbg
d
epe
n
dency ver
s
i
on to 0
.
6
.
1
-
SNAPSH
O
T
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saal
f
eld
raised depe
n
dency to Simple_Neu
r
i
t
e_Tracer to 2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
Stephan
S
aalfeld
Merge branch 'm
a
ster' into
spring-
m
esh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan S
a
alfeld
added com
m
ents and
au
t
o-finalize in DistortionCor
r
ection/NLT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfel
d
added mpic
b
g
.
v
ersion as maven pro
p
er
t
y,
commit
|
commitdiff
|
tree
2013-05-06
Stephan Saa
l
feld
track move of
the im
g
lib1 depend
e
ncy
commit
|
commitdiff
|
tree
2013-04-22
Stephan Saa
l
feld
Merge bra
n
c
h 'master
'
into
spring-
m
esh2
commit
|
commitdiff
|
tree
2013-03-05
Stephan S
a
al
f
e
l
d
M
erge
b
ranch
'master'
i
nto s
p
rin
g
-mesh2
commit
|
commitdiff
|
tree
2013-01-18
Stephan Saalfeld
us
e
a
r
ray
l
i
st where arraylists
are returned
commit
|
commitdiff
|
tree
2013-01-16
Stephan Saalfeld
adjust
m
picbg spring-mesh2 which needs less
d
amping
commit
|
commitdiff
|
tree
2013-01-11
St
e
p
h
an
S
aalfeld
Fi
x
ed b
u
g in Pa
t
c
h
.
getFullCoord
i
nateT
r
ansform that
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan S
a
alfeld
Ch
a
nged fixedPatche
s
/Tile
s
input
c
ollec
t
ion to Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan
Saalfeld
Pa
i
r co
n
s
tructo
r
h
a
s to be pub
l
ic
commit
|
commitdiff
|
tree
2013-01-10
Step
h
a
n
S
a
a
l
feld
forgot to set isAl
i
g
n
ed
f
lag in ela
s
tic la
y
er
a
lig
n
m
e
nt
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Step
h
an Saalfeld
e
l
astic
m
o
ntage param must be public
commit
|
commitdiff
|
tree
2013-01-07
Stephan
S
aalfeld
added Patch
.
getFullCo
r
dinateTransform()
w
hich gene
r
ates a
commit
|
commitdiff
|
tree
2013-01-07
Ste
p
ha
n
Sa
a
lf
e
ld
* removed isAligned from Abstract
Param cla
s
s
commit
|
commitdiff
|
tree
2013-01-05
Stephan
S
aalfeld
877: it
i
s legal for
l
ayerT
h
ing
to be null
commit
|
commitdiff
|
tree
2012-12-21
S
t
epha
n
Saal
f
eld
C
o
rrected several long-standing issues
w
ith SIFT-
l
inear and
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
Regul
a
r
izedLayerAlignm
e
nt got more fl
e
xible API methods an
d
commit
|
commitdiff
|
tree
2012-12-19
Steph
a
n Sa
a
lfeld
clear
i
ng cache in
l
aye
r
al
i
gnment must be default true
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalf
e
ld
p
r
int
o
ptimizer results and do not print "mat
c
h
ing
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
S
tephan Saalfeld
do not
r
emove empty
lay
e
rs in layer
a
lignme
n
t
commit
|
commitdiff
|
tree
2012-11-07
Stephan Saalfeld
fixed versi
o
n
n
umber
o
f mpicb
g
dependency
commit
|
commitdiff
|
tree
2012-11-07
Stephan Saalfe
l
d
fixe
d
m
er
g
e error
:
moved RobustNorm
a
lizeLocalContrast
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
St
e
phan S
a
alfel
d
m
u
lti-t
h
readed RobustNor
m
alizeLocalContrast main
b
ody
commit
|
commitdiff
|
tree
2012-09-01
S
t
ephan Saalfeld
Removed DisplayCanvas
.
s
etDraw
i
n
gC
o
lor(int
,
int
,
boolean
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
S
t
ephan S
a
alfeld
Mer
g
e branc
h
'ma
s
ter' of ssh://repo
.
or
.
cz/
s
rv/git
/
trakem2
commit
|
commitdiff
|
tree
2012-08-31
Stepha
n
S
aa
l
feld
adde
d
e
xper
i
mental local
contras
t
enhanc
e
r Robu
s
tNormalizeLo
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
Stephan S
a
a
lfeld
re
m
oved obsolete cho
i
ce from align
l
ayers dialog
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfeld
sp
l
it elastic montage dialog
f
or blo
c
k matching and use
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfeld
Merge branc
h
'mas
t
er' of
ssh://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-06-26
S
t
e
phan
S
a
a
l
f
eld
use and do
n
o
t
ignore alpha in
helper method
commit
|
commitdiff
|
tree
2012-06-21
Stephan Saalfeld
use
the new seq
u
ential
dialogs in "monta
g
e"
f
or
a selection
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
Steph
a
n Saalf
e
ld
Merge branch 'master'
o
f
ssh://repo
.
or
.
cz/
s
rv/
g
it/trakem2
commit
|
commitdiff
|
tree
2012-06-20
Stepha
n
Saalfeld
fixed range check
in laye
r
alignment
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saalfeld
fi
x
ed condition check in Ali
g
n Layers for
r
eg
u
lari
z
a
t
ion
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
S
tephan
S
aalfe
l
d
Mer
g
e bra
n
c
h
'm
a
ster' into
r
egularized-affine
commit
|
commitdiff
|
tree
2012-06-08
Steph
a
n Saalfeld
d
o not consider disconnect
e
d tiles
commit
|
commitdiff
|
tree
2012-06-08
Step
h
an
S
aa
l
f
e
ld
Me
r
ge
branch
'regularized-affine'
o
f ssh://r
e
po
.
or
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalf
e
ld
p
r
e-align graphs and match only
overla
p
pi
n
g tile
s
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalf
e
l
d
pre
-
align graphs an
d
m
a
tch
o
n
l
y overlappin
g
tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan
S
a
alfeld
initialize Tile models and not only patches in alignGraphs
commit
|
commitdiff
|
tree
2012-06-08
S
t
e
phan Saa
l
feld
changed ali
g
nGraphs input co
l
lections
fro
m
Set to Iterab
l
e
commit
|
commitdiff
|
tree
2012-06-08
Stephan
Saalfeld
m
a
k
e
s
ure
t
hat stati
c
paramete
r
s do
n
ot ove
r
ride
each
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfe
l
d
r
emo
v
e s
p
u
riou
s
import
commit
|
commitdiff
|
tree
2012-06-05
Stepha
n
Saalfeld
work
a
roun
d
O
racle javac
g
enerics
issu
e
commit
|
commitdiff
|
tree
2012-06-05
Steph
a
n Saalfeld
mult
i
-lay
e
r-mo
s
aic us
e
s Param/Pa
r
amOptimize
.
setup(
S
tr
i
ng
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stepha
n
Saalf
e
l
d
m
o
nta
g
e layers uses ParamOptimize
.
setu
p
i
n
ste
a
d of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Step
h
an
Saalf
e
ld
do not
f
ix a ra
n
dom tile if none is fixed
commit
|
commitdiff
|
tree
2012-05-29
Stephan Saalfeld
Condensed
.
mailmap
commit
|
commitdiff
|
tree
2012-05-29
Stephan
S
aalfeld
Adde
d
.
mailmap
commit
|
commitdiff
|
tree
2012-05-21
Stephan
Saal
f
eld
Merge branch 'ma
s
ter' into
regularized-aff
i
ne
commit
|
commitdiff
|
tree
2012-05-21
Step
h
an Saalfeld
added *
N
one* field to layer range reference selection
commit
|
commitdiff
|
tree
2012-05-21
S
t
ep
h
an Saalfeld
split Align
.
Pa
r
amOptimi
z
e di
a
logs in p
i
e
ces tha
t
f
it
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
Step
h
an Saa
l
feld
added G
e
n
ericAffineT
i
le2D
commit
|
commitdiff
|
tree
2012-05-21
Ste
p
h
an Saalf
e
l
d
generalized A
b
s
t
ractAff
i
neTile2D generic paramet
e
r
commit
|
commitdiff
|
tree
2012-05-15
Ste
p
han
S
aalfeld
t
r
ack ref
a
cto
r
ing i
n
mpicbg
.
commit
|
commitdiff
|
tree
2012-05-09
Stephan
Saalfeld
adde
d
regular
i
zed a
f
f
ine layer
a
lignment,
commit
|
commitdiff
|
tree
2012-03-28
Stephan S
a
alfeld
f
i
xed c
r
e
at
e
Image():
u
se premulti
p
lied r
a
ster
commit
|
commitdiff
|
tree
2012-03-27
Step
h
an Saalfeld
do n
o
t print
t
he mipmap scale
commit
|
commitdiff
|
tree
2012-03-27
Ste
p
han Saalf
e
ld
f
o
r
n
ow, do not use pre
-
multi
p
lied alph
a
s
ince
it does
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan S
a
alfeld
Fixed
w
rong
p
ainting of Patches w
h
e
n
u
s
ing a downsampl
e
r
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan S
a
alf
e
ld
DownsamplerMipMap
s
now c
o
nsistently uses combined d
o
w
nsampli
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Step
h
an Saalfeld
fixed Downsam
p
lerMip
M
aps
b
l
e
nding merged alpha into
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
S
t
ephan Saalfeld
Dow
n
sampler tes
t
still s
h
ows
i
t
being
significantly
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
S
tep
h
an Saalfeld
Fixed
D
ownsampler
:
range che
c
k in
b
yt
e
conve
r
s
i
on was
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
Merge branch 'integral' of ssh://repo
.
o
r
.
cz/
s
rv/git
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
Stephan Saalf
e
ld
added mis
s
in
g
package to F
a
kefile
commit
|
commitdiff
|
tree
2012-03-08
S
t
ep
h
an Saalfeld
Merg
e
b
r
anch
'
master' of ssh://
r
e
po
.
or
.
cz
/
s
r
v/git/trake
m
2
commit
|
commitdiff
|
tree
next