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Added Eric Trautman's check for number of threads to prevent
2015-01-12
Ste
p
han S
a
alfeld
Add
e
d
E
r
ic Trautman's che
c
k f
o
r nu
m
ber of t
h
reads to
.
.
.
commit
|
commitdiff
|
tree
2015-01-12
St
e
phan
S
a
alf
e
ld
Fixed Value2NoiseFilter
ma
x
export
commit
|
commitdiff
|
tree
2014-12-19
Stephan Saalfeld
bump to next
develop
m
ent cycle
commit
|
commitdiff
|
tree
2014-12-19
St
e
phan Saalfeld
Merge remote
-
tracking branch 'origin'
commit
|
commitdiff
|
tree
2014-12-19
Stephan Saalfeld
reproduc
i
ble b
u
il
d
pom-
t
rakem2-1
.
1
.
2
commit
|
commitdiff
|
tree
2014-12-19
Steph
a
n Saalfeld
separated C
o
or
d
inat
e
T
r
ansform part
s
of
l
e
nscorrectio
n
.
.
.
commit
|
commitdiff
|
tree
2014-12-18
Stephan Sa
a
lfeld
ad
d
ed multiple
l
evel
d
o
wnsamp
l
ing
f
or ColorProcessor
commit
|
commitdiff
|
tree
2014-12-17
Stephan Saalfeld
b
u
mp to n
e
xt
d
evelopment
cycle
commit
|
commitdiff
|
tree
2014-12-17
St
e
p
h
a
n
Saalfel
d
se
c
ond try
to
m
a
k
e r
e
producible buil
d
po
m
-
t
rakem2-
1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-17
S
tephan
S
aalfeld
Merge branch 'intensity-transf
o
r
m
'
commit
|
commitdiff
|
tree
2014-12-13
Step
h
a
n Saalfeld
bump to next development
c
ycle
commit
|
commitdiff
|
tree
2014-12-13
Stephan Saalfeld
re
p
ro
d
ucible bui
l
d
p
o
m-trakem2-1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-12
Stephan S
a
alfeld
Me
r
ge
remote-tracking
branch
'origin/master'
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalfeld
bump to new developm
e
nt cycle
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saa
l
feld
reproducible build pom-trakem2-1
.
1
.
0
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalfeld
Merge branch 'master'
of g
i
th
u
b
.
com:trakem2/TrakEM2
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalfe
l
d
added Va
l
ueToNo
i
se filter wh
i
ch fills
a gi
v
en intensit
y
.
.
.
commit
|
commitdiff
|
tree
2014-11-07
Ste
p
han Saalfeld
Merge branch 'master' into c
o
ord
X
fmFix
commit
|
commitdiff
|
tree
2014-11-07
St
e
phan Saa
l
fe
l
d
M
e
rge remote-
t
rackin
g
br
a
n
ch
'
or
i
gin/
i
ntensity
-
transform'
commit
|
commitdiff
|
tree
2014-10-04
Ste
p
h
an
S
aalf
e
ld
added RobustNo
r
mal
i
zedLocalCo
n
tras
t
F
i
l
ter, fas
t
a
n
d
.
.
.
commit
|
commitdiff
|
tree
2014-10-04
Stephan Saa
l
f
e
ld
Cha
n
ged
d
efa
u
lt block
r
ad
i
us
i
n
Nor
m
alizeLocalContrast
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Step
h
an
Saa
l
fel
d
auto-removed some training whitesp
a
ces
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saalf
e
l
d
adde
d
ru
n
m
e
thod
that does no
t
ne
e
d
a worker
for easier
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stepha
n
Saa
l
feld
auto-remov
e
d s
o
m
e trailing
w
hitesp
a
ces
commit
|
commitdiff
|
tree
2014-10-02
Stephan Sa
a
lfeld
parallelized inters
e
ction tests for pai
r
Over
l
a
ppin
g
Tiles
commit
|
commitdiff
|
tree
2014-10-02
Stephan S
a
a
lf
e
ld
auto-
f
ina
l
i
z
e c
o
nstant properties and paramete
r
s in
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan
Saa
l
feld
threadsaf
e
Utils
.
ensure(File)
commit
|
commitdiff
|
tree
2014-06-06
St
e
p
h
an
S
aalfeld
fixed bu
g
in generation of a
l
phamask
s
commit
|
commitdiff
|
tree
2014-06-05
Step
h
an Saalfeld
externaliz
e
d
Dis
t
ortionCorrecti
o
n
.
run to enable
calling
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
Ste
p
ha
n
Saalfeld
Ec
l
ipse
autu-cosmetics
in DistortionCorrection
commit
|
commitdiff
|
tree
2014-05-19
Step
h
an Saalfel
d
Merge br
a
nch '
m
aster' int
o
intensity-t
r
ansform
commit
|
commitdiff
|
tree
2014-05-19
Step
h
an Saal
f
eld
use sta
n
d
a
r
d
w
riter for co
o
rdi
n
atetransforms
commit
|
commitdiff
|
tree
2013-10-10
S
tephan Saalfel
d
replace
d
plu
g
ins
.
config with the Fiji version
commit
|
commitdiff
|
tree
2013-09-20
Stepha
n
Saalfeld
Merge branc
h
'master' of ssh://re
p
o
.
o
r
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Ste
p
h
a
n Saalfeld
Merge branch 'master'
o
f ssh://
r
epo
.
or
.
c
z
/
s
rv/git/trakem2
commit
|
commitdiff
|
tree
2013-09-19
S
tephan Saal
f
eld
Parallel pairOverlappingTiles did not wo
r
k and r
e
ported
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saalf
e
l
d
Me
r
ge branch '
m
aster' o
f
ssh://r
e
po
.
or
.
c
z
/
s
r
v/git/trakem2
commit
|
commitdiff
|
tree
2013-09-16
Stepha
n
Saalfeld
re-ad
d
ed legacy opt
i
mizer f
o
r
sprin
g
meshes, this would
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stepha
n
Saalfeld
T2-NI
T
/pom
.
x
m
l
c
an inherit version
n
umber f
r
o
m parent
commit
|
commitdiff
|
tree
2013-08-14
S
teph
a
n Sa
a
lfe
l
d
added
missing d
e
pendencies to
j
ava3d core-utils and
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
Step
h
an Saa
l
feld
set parent po
m
of pom-trakem2 to p
o
m-f
i
ji
.
2
.
0
.
0
-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
S
tephan Saalfeld
Merge branch 'spring
-
mesh2'
o
f s
s
h://repo
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
S
tep
h
a
n
Saalfeld
Merge bra
n
ch 'master' int
o
sp
r
ing
-
m
esh2
commit
|
commitdiff
|
tree
2013-08-12
Step
h
an
S
aa
l
feld
raised mpicbg depende
n
cy ve
r
sion to 0
.
6
.
1-SN
A
P
S
HOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan
Saalfeld
rai
s
e
d de
p
endency to
Simple_N
e
urite_
T
racer
t
o 2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfe
l
d
M
e
rge branch 'ma
s
te
r
' into spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Sa
a
lfeld
added comments and auto-
f
inalize
i
n Distort
i
onCorrection/NLT
commit
|
commitdiff
|
tree
2013-08-12
S
t
e
p
han
Saalfeld
a
dd
e
d mpicbg
.
vers
i
on as maven property,
commit
|
commitdiff
|
tree
2013-05-06
Ste
p
han Saalfel
d
t
rac
k
move
o
f
t
he imglib1
dependency
commit
|
commitdiff
|
tree
2013-04-22
Step
h
an Saalfel
d
M
erge branch 'master' into spring-mesh2
commit
|
commitdiff
|
tree
2013-03-05
Steph
a
n Saalfeld
Merge branch 'm
a
ster' into spr
i
ng-m
e
s
h2
commit
|
commitdiff
|
tree
2013-01-18
St
e
phan Saalfeld
use
arraylist
where a
r
ra
y
lists are re
t
urned
commit
|
commitdiff
|
tree
2013-01-16
Stephan Saalfeld
a
d
just mpic
b
g s
p
ring-me
s
h
2 whi
c
h needs less damp
i
ng
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saalfeld
Fi
x
ed
b
ug i
n
Patch
.
getF
u
llCoordinateTransform th
a
t
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saalfeld
Changed f
i
xedPatches/Tiles input col
l
ect
i
on to Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
S
t
ephan
Saalfeld
P
a
ir construct
o
r has to be public
commit
|
commitdiff
|
tree
2013-01-10
Ste
p
han Saalfel
d
forgot to set isAl
i
gne
d
flag in elas
t
ic laye
r
alignmen
t
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Stephan Saal
f
eld
elasti
c
mont
a
ge param mus
t
be public
commit
|
commitdiff
|
tree
2013-01-07
S
tephan S
a
al
f
eld
added Patch
.
getFullCor
d
in
a
te
T
ra
n
sform() which generate
s
a
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saa
l
feld
* removed isAligned
fro
m
A
b
stract Param cla
s
s
commit
|
commitdiff
|
tree
2013-01-05
Ste
p
han Saalfeld
8
7
7: it is lega
l
f
or layerThing t
o
b
e
null
commit
|
commitdiff
|
tree
2012-12-21
Stephan Saalfeld
Correcte
d
several
l
on
g
-standing
issues wi
t
h SIFT-linear and
commit
|
commitdiff
|
tree
2012-12-19
St
e
phan Saa
l
feld
Regu
l
arizedLayerAlignment
g
ot more fl
e
x
i
ble
API methods and
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
clearing cach
e
i
n
layer a
l
i
gnment must be defaul
t
t
r
ue
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfe
l
d
print optimizer results an
d
d
o
not
prin
t
"matching
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
do
n
o
t
remove empty la
y
e
r
s in
layer alignment
commit
|
commitdiff
|
tree
2012-11-07
Stephan Saal
f
eld
fi
x
ed version nu
m
ber of mpicbg de
p
endency
commit
|
commitdiff
|
tree
2012-11-07
S
t
ephan Saalfeld
fixed
mer
g
e error: moved
R
o
b
ustNormalizeLocalContras
t
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
Stephan
Saalf
e
l
d
multi-thr
e
aded RobustNorm
a
lizeLocalCo
n
trast mai
n
body
commit
|
commitdiff
|
tree
2012-09-01
Stephan Saalfeld
Removed DisplayCa
n
v
a
s
.
setDrawingColor(
i
nt,
i
nt
,
bool
e
an
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Stephan Saalfe
l
d
M
erge
bran
c
h
'mas
t
er
'
of ssh://repo
.
or
.
c
z
/srv/gi
t
/trakem2
commit
|
commitdiff
|
tree
2012-08-31
St
e
phan Saalfeld
a
d
ded experimental
l
o
c
al contrast
enhancer
RobustN
o
r
malizeLo
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
Ste
p
han Saal
f
eld
remov
e
d o
b
solete choice
f
rom
alig
n
la
y
ers dialog
commit
|
commitdiff
|
tree
2012-06-26
S
t
ephan Saalfeld
split elastic mo
n
tage dial
o
g for bl
o
ck matching and use
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfeld
M
erge bra
n
ch 'mast
e
r'
o
f
ssh://
r
epo
.
or
.
cz
/
srv/git/trakem2
commit
|
commitdiff
|
tree
2012-06-26
Stephan
Saalfe
l
d
use
a
n
d do not ignor
e
alpha in
h
elper method
commit
|
commitdiff
|
tree
2012-06-21
Stephan Saalfeld
use
th
e
new s
e
que
n
tial dialogs in "monta
g
e" for a selecti
o
n
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
Stephan Saal
f
e
l
d
Merge branch
'master' of ssh://repo
.
or
.
cz/sr
v
/git
/
trakem2
commit
|
commitdiff
|
tree
2012-06-20
Stephan Saa
l
feld
f
ix
e
d
range check in layer alignmen
t
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saalfeld
fixed conditi
o
n
c
h
eck
in
Al
i
g
n
La
y
ers
for regu
l
arization
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
Stephan
Saalf
e
l
d
Merge bra
n
c
h
'mast
e
r' i
n
to r
e
gularized-affi
n
e
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
d
o
n
ot c
o
nsid
e
r dis
c
onnected til
e
s
commit
|
commitdiff
|
tree
2012-06-08
Ste
p
han Saal
f
eld
Merge branch
'
r
eg
u
lar
i
zed-af
f
i
ne' of ssh://
r
epo
.
or
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
Stephan S
a
alfe
l
d
pre-align g
r
ap
h
s and match o
n
l
y o
v
e
r
l
appi
n
g tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalf
e
ld
pre-align graphs and match
only
overlapping tiles
commit
|
commitdiff
|
tree
2012-06-08
S
tephan
S
aalfel
d
in
i
tialize
Tile models a
n
d not on
l
y pat
c
hes in a
l
ignGrap
h
s
commit
|
commitdiff
|
tree
2012-06-08
S
t
ephan
S
aalfeld
changed al
i
gnGraphs input col
l
ec
t
ions
f
rom Set to Iterable
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saa
l
f
eld
make sure that
static parameters d
o
not
override e
a
ch
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saal
f
el
d
r
emo
v
e s
p
urious import
commit
|
commitdiff
|
tree
2012-06-05
Stepha
n
Saalfeld
workaround
O
racle javac generics issu
e
commit
|
commitdiff
|
tree
2012-06-05
Stephan S
a
a
l
feld
multi-layer-mosaic
use
s
Param/ParamO
p
timize
.
setup(St
r
ing
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
S
teph
a
n Saalfe
l
d
montage
l
ay
e
rs u
s
es ParamOpti
m
ize
.
se
t
up instead
o
f
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfeld
d
o
not fix a ran
d
om tile if none
i
s fixed
commit
|
commitdiff
|
tree
2012-05-29
Stephan Sa
a
lfeld
Cond
e
nsed
.
mailmap
commit
|
commitdiff
|
tree
2012-05-29
Stephan Saalfeld
Added
.
mailmap
commit
|
commitdiff
|
tree
2012-05-21
Step
h
an Saalfeld
Merge branch 'master
'
i
nto r
e
gul
a
rized-affine
commit
|
commitdiff
|
tree
2012-05-21
Stephan Sa
a
lfel
d
adde
d
*None* field to layer range referen
c
e
s
e
lectio
n
commit
|
commitdiff
|
tree
2012-05-21
Step
h
a
n
Saalfe
l
d
sp
l
i
t
Align
.
ParamOpti
m
iz
e
dialogs in pieces that fit
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
Steph
a
n Saalfeld
a
dd
e
d Gen
e
ricAf
f
ineTile2D
commit
|
commitdiff
|
tree
2012-05-21
Ste
p
han Saalfeld
generalized Abstrac
t
AffineTile2D generic parameter
commit
|
commitdiff
|
tree
next