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Added Eric Trautman's check for number of threads to prevent
2015-01-12
Stephan
Saalf
e
ld
Added Eric Tr
a
utma
n
'
s c
h
eck for number of threads to
.
.
.
commit
|
commitdiff
|
tree
2015-01-12
S
tephan
S
aalfeld
Fixed Value2NoiseFilter
max
expor
t
commit
|
commitdiff
|
tree
2014-12-19
S
tephan S
a
al
f
eld
bump to next develo
p
men
t
c
y
cle
commit
|
commitdiff
|
tree
2014-12-19
Stephan Saalfeld
Me
r
g
e
remote-tracking
branch 'origin'
commit
|
commitdiff
|
tree
2014-12-19
Stephan Saalfel
d
repro
d
ucible bui
l
d p
o
m-t
r
akem2-1
.
1
.
2
commit
|
commitdiff
|
tree
2014-12-19
Stephan Saalfeld
separated Coordinate
T
r
a
n
s
form parts of lenscorrection
.
.
.
commit
|
commitdiff
|
tree
2014-12-18
Stephan Saalfe
l
d
ad
d
ed multip
l
e level
d
ow
n
sampling for Col
o
rP
r
ocessor
commit
|
commitdiff
|
tree
2014-12-17
Stephan Saalfeld
bu
m
p to
n
ext deve
l
opm
e
nt cycle
commit
|
commitdiff
|
tree
2014-12-17
Stepha
n
Saalfeld
second t
r
y to make reproduc
i
b
le build pom-trak
e
m2-1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-17
Stepha
n
Saa
l
feld
Merge bran
c
h 'intensity-transf
o
rm'
commit
|
commitdiff
|
tree
2014-12-13
Ste
p
han Saalfel
d
b
ump to next de
v
elo
p
men
t
cycle
commit
|
commitdiff
|
tree
2014-12-13
Stephan Saalfeld
repro
d
ucibl
e
build pom-trakem2-1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-12
Steph
a
n Saa
l
feld
Mer
g
e rem
o
t
e
-
tra
c
king branch 'origin/mas
t
er'
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalfeld
bump to
new de
v
elo
p
ment c
y
c
le
commit
|
commitdiff
|
tree
2014-12-12
Stephan Sa
a
l
f
eld
reproducible build
pom-trakem2-1
.
1
.
0
commit
|
commitdiff
|
tree
2014-12-12
Step
h
an Saal
f
eld
Merge branch
'
m
a
ster'
of github
.
c
om:trakem2/Tr
a
kEM2
commit
|
commitdiff
|
tree
2014-12-12
Step
h
an
Saalfeld
adde
d
ValueToNoise
f
ilter
whi
c
h fill
s
a
g
i
ven in
t
ens
i
ty
.
.
.
commit
|
commitdiff
|
tree
2014-11-07
Stepha
n
Saa
l
feld
Mer
g
e bran
c
h 'master' in
t
o coordXf
m
F
ix
commit
|
commitdiff
|
tree
2014-11-07
Stephan
Saal
f
eld
Merge remote-tracki
n
g
branch 'origin/inten
s
ity-tran
s
fo
r
m
'
commit
|
commitdiff
|
tree
2014-10-04
Stephan Saalfeld
added RobustNormalizedLoc
a
lContrast
F
ilter,
f
ast and
.
.
.
commit
|
commitdiff
|
tree
2014-10-04
Stephan Saalfeld
Changed default b
l
ock r
a
dius in NormalizeLocalContrast
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
S
te
p
han S
a
alfeld
auto-removed s
o
m
e
tr
a
i
n
i
ng
whit
e
s
paces
commit
|
commitdiff
|
tree
2014-10-02
S
t
ephan Saalfeld
a
dded
r
un m
e
thod tha
t
d
o
es not
need a worker for easier
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
S
tephan Saa
l
feld
au
t
o-removed some traili
n
g whi
t
es
p
aces
commit
|
commitdiff
|
tree
2014-10-02
S
t
ephan Saalfeld
parallelized intersectio
n
te
s
t
s
for pairOverlap
p
ingTiles
commit
|
commitdiff
|
tree
2014-10-02
Stephan Sa
a
l
f
eld
a
uto-finalize co
n
stant
properties an
d
parameters in
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Ste
p
han
Saalfeld
threadsafe Uti
l
s
.
ensure(File)
commit
|
commitdiff
|
tree
2014-06-06
S
t
e
p
han
S
aalfeld
fixed bug in gener
a
tion of alpham
a
s
k
s
commit
|
commitdiff
|
tree
2014-06-05
Stepha
n
S
a
a
l
feld
externalize
d
D
i
st
o
rtionCorrection
.
run to enable
callin
g
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
Stephan Sa
a
lfeld
Ecl
i
p
s
e
a
utu-cosmetics in DistortionCor
r
ection
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saalf
e
ld
Mer
g
e b
r
anch
'ma
s
t
e
r' into intensity-tran
s
form
commit
|
commitdiff
|
tree
2014-05-19
Step
h
an S
a
alfeld
u
se sta
n
dard writer
for c
o
ordinatetransforms
commit
|
commitdiff
|
tree
2013-10-10
Stephan
S
aalfeld
replaced p
l
ugins
.
config w
i
th the F
i
ji v
e
rsion
commit
|
commitdiff
|
tree
2013-09-20
Stephan Saalfeld
Merg
e
bra
n
c
h
'master' of
s
s
h://r
e
po
.
or
.
cz/srv/git/tr
a
kem2
commit
|
commitdiff
|
tree
2013-09-19
Step
h
an Saalfeld
Me
r
ge branch 'master' of ssh://r
e
po
.
or
.
cz/srv/git/trakem
2
commit
|
commitdiff
|
tree
2013-09-19
St
e
phan Saalfeld
Parallel pairOverl
a
p
pingTiles d
i
d not work a
n
d reporte
d
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan
S
aalfeld
M
e
r
ge branch
'
master' of ss
h
://repo
.
or
.
c
z/s
r
v/git/tra
k
em2
commit
|
commitdiff
|
tree
2013-09-16
Stephan S
a
alfeld
re-
a
dd
e
d
l
egacy optim
i
ze
r
for
spring meshes, thi
s
would
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saalfeld
T2-NIT/pom
.
xm
l
can in
h
erit version n
u
mber
f
r
o
m
parent
commit
|
commitdiff
|
tree
2013-08-14
Stephan
S
aa
l
feld
added missi
n
g dependencies
to java3d core-
u
tils
and
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
Steph
a
n Sa
a
l
f
eld
set
p
arent po
m
of pom-tr
a
kem
2
to pom-fiji
.
2
.
0
.
0-SNAPSH
O
T
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saa
l
feld
Merge br
a
n
c
h
'sprin
g
-mesh2' of ssh://
r
e
p
o
.
or
.
cz/sr
v
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
Stephan S
a
a
lfeld
Merge branch 'mas
t
e
r' into spr
i
ng-mes
h
2
commit
|
commitdiff
|
tree
2013-08-12
S
t
e
phan Saalfeld
raised m
p
icbg
d
e
pende
n
cy version to
0
.
6
.
1-SNAPSHO
T
commit
|
commitdiff
|
tree
2013-08-12
Stephan Sa
a
lfeld
raised depen
d
ency to S
i
m
ple_Neurite_Tracer to 2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
S
t
ephan Saa
l
feld
Me
r
ge
b
ranch
'
master'
i
nto sprin
g
-m
e
sh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan
S
aalfeld
added
c
o
mment
s
and auto-finalize in Dist
o
rtionCorrection/NLT
commit
|
commitdiff
|
tree
2013-08-12
Stephan
S
aalfeld
added mpicbg
.
version
as maven property,
commit
|
commitdiff
|
tree
2013-05-06
S
t
ephan Saal
f
eld
tr
a
ck move of the imglib1 dependency
commit
|
commitdiff
|
tree
2013-04-22
Step
h
an Saa
l
feld
Merg
e
branch 'maste
r
' in
t
o sp
r
ing-mesh
2
commit
|
commitdiff
|
tree
2013-03-05
Ste
p
han Saalfeld
M
e
r
g
e
branch 'master' into spring-mesh2
commit
|
commitdiff
|
tree
2013-01-18
Steph
a
n Saalfeld
use
a
rr
a
ylist where arraylists
are returned
commit
|
commitdiff
|
tree
2013-01-16
St
e
phan Saalfeld
adj
u
s
t
mpicbg spring-mesh2 which
n
eeds less damp
i
ng
commit
|
commitdiff
|
tree
2013-01-11
Ste
p
han Saalfeld
Fixed
bug
i
n
P
atch
.
getF
u
ll
C
o
ordinateTransf
o
r
m
that
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Steph
a
n S
a
alfeld
C
h
anged fixedPatc
h
e
s/Tiles inp
u
t collection t
o
Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Steph
a
n Saal
f
eld
P
a
ir cons
t
ruct
o
r has to be
public
commit
|
commitdiff
|
tree
2013-01-10
St
e
p
h
an
Saalfeld
fo
r
got t
o
set isAlign
e
d fla
g
i
n
elastic l
a
ye
r
alignment
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
S
t
e
p
han Saalfeld
e
las
t
ic montage param mus
t
be public
commit
|
commitdiff
|
tree
2013-01-07
S
t
e
phan Saal
f
eld
ad
d
ed Patch
.
getFullCordi
n
a
t
eTransform
(
)
whi
c
h
genera
t
es a
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saalfeld
*
removed isAligned f
r
om Abstract Para
m
clas
s
commit
|
commitdiff
|
tree
2013-01-05
Stephan
Saalfeld
877: it is l
e
gal for layerThing to be
n
ull
commit
|
commitdiff
|
tree
2012-12-21
S
t
ephan S
a
alfeld
Co
r
rected several lon
g
-standing
i
ss
u
es
with SIFT-linear a
n
d
commit
|
commitdiff
|
tree
2012-12-19
Ste
p
han Saalfeld
Regular
i
zedLay
e
rAlignment got more flexible API met
h
ods and
commit
|
commitdiff
|
tree
2012-12-19
Stephan
Saalfeld
clear
i
ng cache in la
y
e
r alignm
e
nt
m
ust be default
tru
e
commit
|
commitdiff
|
tree
2012-12-19
Stephan
S
aalfe
l
d
print optimizer
result
s
a
n
d do not print "matchin
g
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
S
t
ephan Saalfeld
do no
t
r
emove emp
t
y la
y
ers i
n
layer align
m
ent
commit
|
commitdiff
|
tree
2012-11-07
Stepha
n
Saalf
e
ld
fixed
v
ersio
n
n
umb
e
r of mpicbg dependency
commit
|
commitdiff
|
tree
2012-11-07
Stephan
S
aalf
e
ld
fixed merge
error: moved Ro
b
ustNormalizeLocalCon
t
r
a
st
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
Step
h
a
n S
a
alfeld
m
u
lti-threa
d
ed
R
obustNo
r
malizeLo
c
al
C
o
ntrast main b
o
d
y
commit
|
commitdiff
|
tree
2012-09-01
Stepha
n
Saalf
e
ld
Removed DisplayC
a
nvas
.
s
e
t
Drawing
C
ol
o
r(int,int
,
boolean
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Step
h
a
n
Saalfeld
M
e
rge branch 'master' of ssh
:
//repo
.
or
.
cz/s
r
v/git/trakem2
commit
|
commitdiff
|
tree
2012-08-31
Stephan
Saalfeld
added e
x
perimental local contrast en
h
ancer RobustNormalizeL
o
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
S
tephan Saalfeld
r
e
m
o
v
e
d
obsolete choice
f
rom align layers
dialog
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfeld
split
el
a
stic montage dialog
f
or block matchin
g
a
n
d us
e
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfel
d
Merge branch
'mas
t
er' of ss
h
://repo
.
or
.
c
z/srv/git/trakem
2
commit
|
commitdiff
|
tree
2012-06-26
Step
h
an S
a
al
f
e
l
d
use and do
n
o
t ig
n
ore alpha
in helper met
h
o
d
commit
|
commitdiff
|
tree
2012-06-21
Ste
p
han Saalfeld
use the new
s
equenti
a
l
d
i
alogs in "montage"
for a s
e
lection
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
Stephan
S
aalfeld
Merge branch 'm
a
ster' of ssh://repo
.
or
.
cz
/
srv/git/trakem2
commit
|
commitdiff
|
tree
2012-06-20
S
tephan Saalf
e
ld
fix
e
d range c
h
eck in layer a
l
ign
m
ent
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saalf
e
ld
f
i
xed condition check in Align La
y
ers for regulariza
t
ion
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
St
e
p
han Sa
a
lfeld
Merge branch 'master' in
t
o regulariz
e
d-affine
commit
|
commitdiff
|
tree
2012-06-08
Step
h
an Saalf
e
ld
do no
t
consider disconnec
t
e
d
ti
l
es
commit
|
commitdiff
|
tree
2012-06-08
Stephan Sa
a
l
feld
Merge branch
'
r
egularized-affine' of ssh
:
//repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
p
r
e-al
i
gn graphs and match only overla
p
ping t
i
les
commit
|
commitdiff
|
tree
2012-06-08
Stephan Sa
a
lfeld
p
re-align gr
a
phs an
d
match only
overlapping tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan Sa
a
lfeld
initialize Tile
m
odels and
no
t
on
l
y
pa
t
ches in alignGrap
h
s
commit
|
commitdiff
|
tree
2012-06-08
Step
h
a
n Saalfeld
change
d
alignG
r
aphs input collect
i
o
ns from Set to Ite
r
a
ble
commit
|
commitdiff
|
tree
2012-06-08
Steph
a
n Saalfeld
make sure t
h
at static parameters do no
t
o
v
errid
e
e
a
c
h
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan
Saalfeld
remove
spuri
o
us import
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfe
l
d
w
orkaround Or
a
c
l
e javac generics issue
commit
|
commitdiff
|
tree
2012-06-05
S
tephan Saalfeld
multi
-
layer-
m
osai
c
uses Param/Par
a
mO
p
t
imize
.
setup(String
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan
S
aalfeld
montage layers uses ParamOptimize
.
setup instead
of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stepha
n
Saalfeld
do n
o
t
fix a rand
o
m tile
i
f none is fixed
commit
|
commitdiff
|
tree
2012-05-29
Stephan Saa
l
f
eld
Condensed
.
m
ail
m
a
p
commit
|
commitdiff
|
tree
2012-05-29
Stephan Sa
a
lfeld
Added
.
mailmap
commit
|
commitdiff
|
tree
2012-05-21
Stephan Sa
a
lfeld
Merge branch
'
master' into
regularized-affine
commit
|
commitdiff
|
tree
2012-05-21
S
t
e
phan Saalfeld
a
d
de
d
*None* fie
l
d t
o
lay
e
r range reference selection
commit
|
commitdiff
|
tree
2012-05-21
S
t
eph
a
n Sa
a
lf
e
ld
s
p
lit Align
.
P
aramOptimi
z
e
dial
o
gs i
n
pi
e
ces
that
f
i
t
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
Ste
p
han S
a
alfeld
added GenericAffineTile2D
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
generalized A
b
str
a
ctAffineTile2D generic p
a
rameter
commit
|
commitdiff
|
tree
next