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Added Eric Trautman's check for number of threads to prevent
2015-01-12
S
t
ephan Sa
a
l
f
eld
Adde
d
Eric T
r
au
t
man's check
f
o
r number of th
r
eads to
.
.
.
commit
|
commitdiff
|
tree
2015-01-12
S
t
ephan
Saalfe
l
d
Fixed Value2No
i
seFil
t
er
m
ax expo
r
t
commit
|
commitdiff
|
tree
2014-12-19
Stephan Saalfeld
bum
p
to
next development cy
c
le
commit
|
commitdiff
|
tree
2014-12-19
Ste
p
han Saalfeld
M
e
rge remote-tracki
n
g b
r
anch 'origin
'
commit
|
commitdiff
|
tree
2014-12-19
St
e
phan
S
aa
l
feld
reproducible
b
uild pom-
t
rakem2-
1
.
1
.
2
commit
|
commitdiff
|
tree
2014-12-19
Stephan
S
aalf
e
ld
separat
e
d
C
oordinate
T
r
a
nsform parts of lenscorrection
.
.
.
commit
|
commitdiff
|
tree
2014-12-18
Stephan S
a
alfeld
added multip
l
e level d
o
wnsampling for ColorProcessor
commit
|
commitdiff
|
tree
2014-12-17
S
t
ephan
S
aalfel
d
bump to next
development cycle
commit
|
commitdiff
|
tree
2014-12-17
Step
h
an Saalfeld
sec
o
nd
try to make repr
o
ducib
l
e bu
i
ld pom-trakem2-1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-17
S
tephan Sa
a
lfeld
Merge branch
'
intensity-transform'
commit
|
commitdiff
|
tree
2014-12-13
Stepha
n
S
aalfeld
bump to next development
c
ycle
commit
|
commitdiff
|
tree
2014-12-13
Stephan Saalfeld
r
e
produc
i
ble b
u
ild pom
-
trakem2
-
1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saa
l
feld
Me
r
ge remote-tracking
b
r
a
nch 'origin/m
a
s
t
er'
commit
|
commitdiff
|
tree
2014-12-12
Step
h
an Sa
a
lfe
l
d
bump to ne
w
devel
o
pment cycle
commit
|
commitdiff
|
tree
2014-12-12
S
t
ephan Saalfe
l
d
reprodu
c
ible build pom-trakem2
-
1
.
1
.
0
commit
|
commitdiff
|
tree
2014-12-12
Ste
p
han Saalfeld
M
e
rge
b
ranch
'
m
aster' of githu
b
.
c
o
m:
t
rakem2/Trak
E
M
2
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalfeld
added Val
u
eToNoise f
i
lter whic
h
f
ills a given
intensity
.
.
.
commit
|
commitdiff
|
tree
2014-11-12
St
e
p
h
an Saalfel
d
Update README
commit
|
commitdiff
|
tree
2014-11-12
Step
h
an
S
aalfeld
U
p
date README
commit
|
commitdiff
|
tree
2014-11-07
Step
h
an
S
aalf
e
ld
Me
r
ge branch 'ma
s
ter' into coordX
f
mFix
commit
|
commitdiff
|
tree
2014-11-07
Stephan Saalfeld
Me
r
ge
r
emote-tracki
n
g branch 'orig
i
n/intensi
t
y-transform'
commit
|
commitdiff
|
tree
2014-10-04
Stephan Saalfe
l
d
add
e
d Ro
b
us
t
NormalizedLocalContra
s
tFilte
r
, fast
and
.
.
.
commit
|
commitdiff
|
tree
2014-10-04
Stephan Saalfeld
Changed
d
efault block radi
u
s in Normali
z
eLo
c
a
l
Con
t
rast
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
S
tephan Saalfeld
a
u
to-removed some t
r
aini
n
g
whitespaces
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saalfel
d
added run meth
o
d
th
a
t does not ne
e
d
a
worker for easier
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Steph
a
n
Saalfe
l
d
auto-re
m
oved some trailing whitespaces
commit
|
commitdiff
|
tree
2014-10-02
S
tephan S
a
alfeld
parallelized intersectio
n
tests for pai
r
O
v
erlapp
i
ngTiles
commit
|
commitdiff
|
tree
2014-10-02
S
tephan Saalfeld
auto-finalize constant properties and
parame
t
ers in
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Ste
p
ha
n
S
a
alfeld
threadsafe Utils
.
ensure(File)
commit
|
commitdiff
|
tree
2014-06-06
Stephan Saalfel
d
f
ixe
d
bug
i
n gener
a
tion
o
f al
p
hamasks
commit
|
commitdiff
|
tree
2014-06-05
Stephan Saalf
e
ld
exte
r
nal
i
zed Dis
t
ortionCorrection
.
ru
n
to enable calling
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
Stephan Saalfeld
Eclipse aut
u
-co
s
metics in Distor
t
ionCor
r
e
ction
commit
|
commitdiff
|
tree
2014-05-19
Stephan
S
aalfel
d
M
er
g
e b
r
an
c
h
'
master
'
in
t
o intensi
t
y-transfo
r
m
commit
|
commitdiff
|
tree
2014-05-19
Stephan
S
aalfeld
use sta
n
dard w
r
iter for coor
d
in
a
t
e
tr
a
ns
f
orm
s
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saalf
e
ld
d
epend on
j
avax
.
me
d
ia for ja
i
commit
|
commitdiff
|
tree
2014-05-19
S
tephan Saalfeld
added methods for dow
n
sampling more
t
h
a
n one l
e
vel
commit
|
commitdiff
|
tree
2013-10-10
S
tepha
n
Saa
l
f
e
ld
replaced plugins
.
c
o
nfig with the Fi
j
i vers
i
on
commit
|
commitdiff
|
tree
2013-09-20
S
te
p
han Saalfeld
Merge branch
'
m
aster' of ssh://rep
o
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2013-09-19
S
tephan
Saalfeld
M
er
g
e branch 'master' of
ssh://repo
.
o
r
.
cz/srv/git/trakem
2
commit
|
commitdiff
|
tree
2013-09-19
Step
h
an Saalfeld
Para
l
lel pairOverlappingTiles did not work and reported
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
S
tephan Saalfeld
Merge bra
n
ch 'mast
e
r
' o
f
s
s
h
:
//repo
.
o
r
.
c
z
/srv/git
/
tra
k
e
m2
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saal
f
eld
re-
a
d
d
e
d legac
y
o
p
ti
m
i
z
er fo
r
spr
i
ng m
e
she
s
, t
h
is w
o
uld
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saalfeld
T2
-
NIT/pom
.
xml c
a
n inherit version numbe
r
from
pare
n
t
commit
|
commitdiff
|
tree
2013-08-14
Stephan Saa
l
feld
added
m
issing depe
n
dencies to java3d core-utils and
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
S
t
epha
n
Saalfel
d
set pare
n
t pom of pom-trake
m
2 to pom-fiji
.
2
.
0
.
0-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
Merge branch 'spring-mesh2' of ssh://r
e
po
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
Stepha
n
Saa
l
f
e
l
d
Merge branch 'master' i
n
to spring-m
e
sh2
commit
|
commitdiff
|
tree
2013-08-12
S
te
p
han S
a
a
lfeld
raised mpi
c
bg dependency version to 0
.
6
.
1
-
SNAP
S
HOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfe
l
d
raised dependency to Simple_Neurite_Tracer
to 2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
Stephan S
a
a
l
fe
l
d
M
erge b
r
a
n
c
h 'master'
i
nto spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
added
co
m
men
t
s
a
nd
aut
o
-f
i
nalize in D
i
storti
o
nCorrecti
o
n/
N
LT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
added mpicbg
.
version as ma
v
en property,
commit
|
commitdiff
|
tree
2013-05-06
Stephan Saalfeld
track
move
o
f the imglib1
d
e
penden
c
y
commit
|
commitdiff
|
tree
2013-04-22
S
t
ephan Saalfeld
Mer
g
e branch 'mast
e
r' int
o
spr
i
ng-mesh2
commit
|
commitdiff
|
tree
2013-03-05
Steph
a
n Saalfeld
M
e
r
ge branch 'master' into
s
p
ri
n
g
-mesh2
commit
|
commitdiff
|
tree
2013-01-18
Stephan
S
aalfeld
use ar
r
ay
l
ist w
h
ere ar
r
a
y
lis
t
s are ret
u
rned
commit
|
commitdiff
|
tree
2013-01-16
Stephan
S
aalf
e
ld
adjust
m
picbg
spring-mesh2 which needs les
s
damping
commit
|
commitdiff
|
tree
2013-01-11
Ste
p
han S
a
alfeld
Fixed bug in
P
atch
.
getFullCoordinateTransf
o
rm t
h
at
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stepha
n
Saalf
e
ld
Ch
a
nged fixe
d
Patches/Tiles inpu
t
collection to Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Step
h
an Saalfeld
Pair con
s
tructor has
to be public
commit
|
commitdiff
|
tree
2013-01-10
S
t
ephan
S
a
alfeld
for
g
o
t
to set isA
l
igned fl
a
g
in
elastic layer alig
n
ment
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Stephan Saalfeld
elastic montage param mu
s
t be p
u
blic
commit
|
commitdiff
|
tree
2013-01-07
Stephan S
a
a
l
feld
ad
d
ed Patch
.
getFullCordinateTransform
(
) which gene
r
ates a
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saalf
e
ld
* removed isAlign
e
d from Abstract Param
c
lass
commit
|
commitdiff
|
tree
2013-01-05
S
tephan Saalfeld
877: it
is legal for l
a
yerThing to be
n
ull
commit
|
commitdiff
|
tree
2012-12-21
Stephan Saalfe
l
d
Corrected several l
o
ng-stand
i
ng issu
e
s with SIF
T
-linear
a
nd
commit
|
commitdiff
|
tree
2012-12-19
Step
h
a
n
S
aalfeld
RegularizedLayerAli
g
nment got
m
ore flexible API
m
ethods
a
nd
commit
|
commitdiff
|
tree
2012-12-19
Stephan Sa
a
lfeld
clearing cach
e
in
l
ayer alignm
e
nt
m
ust be
d
e
fa
u
l
t tr
u
e
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saa
l
feld
print op
t
imiz
e
r results an
d
do no
t
pri
n
t "matching
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
do not remove empty layers in layer alignment
commit
|
commitdiff
|
tree
2012-11-07
Stephan Saal
f
eld
fixed
version numbe
r
of
mp
i
cbg
dependency
commit
|
commitdiff
|
tree
2012-11-07
Stepha
n
Saalfeld
fixed me
r
ge error: m
o
v
ed Robus
t
NormalizeLocalContrast
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
St
e
phan Saalfeld
multi-threaded
R
o
b
ustNormalizeLocalContrast main body
commit
|
commitdiff
|
tree
2012-09-01
Stephan Saa
l
feld
Remov
e
d Display
C
anvas
.
setDrawingColor(i
n
t,int,boolea
n
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
S
tephan
S
a
alfeld
Merge branch 'maste
r
' of ssh://repo
.
or
.
cz/s
r
v/git/trakem2
commit
|
commitdiff
|
tree
2012-08-31
Stephan S
a
a
lfeld
added
e
x
p
eri
m
enta
l
l
o
cal contrast enh
a
nce
r
RobustNo
r
m
a
l
i
z
eLo
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
Step
h
an
S
aalf
e
ld
remove
d
obsolete
cho
i
c
e
from align
l
ay
e
rs dialog
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfeld
split elastic
m
ontage d
i
alog for block matchi
n
g and use
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfel
d
Merge branch 'master'
o
f ssh://repo
.
or
.
cz
/
s
r
v/
g
it/trakem2
commit
|
commitdiff
|
tree
2012-06-26
S
t
ephan Saalfeld
u
s
e
and do not ignore al
p
ha in he
l
pe
r
meth
o
d
commit
|
commitdiff
|
tree
2012-06-21
Stephan Saalfeld
use the
new sequential dialogs in "montage" for a selectio
n
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
Step
h
an Saalfeld
Merge branch
'master' of ssh://repo
.
or
.
cz
/
s
r
v/git/trake
m
2
commit
|
commitdiff
|
tree
2012-06-20
Stephan Sa
a
lfe
l
d
fix
e
d range che
c
k in layer align
m
ent
commit
|
commitdiff
|
tree
2012-06-14
Ste
p
h
an S
a
alfe
l
d
fixed
condition ch
e
ck
in Align L
a
yers fo
r
regulari
z
at
i
o
n
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
Stephan
S
a
a
lfeld
Merge branch 'master' int
o
regularized-a
f
fine
commit
|
commitdiff
|
tree
2012-06-08
S
tep
h
a
n Saa
l
feld
do no
t
consider di
s
c
o
n
nected ti
l
es
commit
|
commitdiff
|
tree
2012-06-08
S
t
eph
a
n Saal
f
eld
Merge bra
n
ch 'regular
i
z
e
d-affine' of ssh
:
//repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
Stephan
S
aalfeld
pre-al
i
g
n gr
a
phs an
d
match only overla
p
pin
g
tiles
commit
|
commitdiff
|
tree
2012-06-08
Step
h
an Saal
f
e
ld
pr
e
-align grap
h
s
a
nd match o
n
ly
overlapping tiles
commit
|
commitdiff
|
tree
2012-06-08
Step
h
an Saalfeld
in
i
tial
i
ze
T
ile
mo
d
els and not only patches in align
G
r
aphs
commit
|
commitdiff
|
tree
2012-06-08
Stephan
Saalfeld
chang
e
d ali
g
n
G
raphs
i
nput collect
i
ons from Set
to Iterable
commit
|
commitdiff
|
tree
2012-06-08
Stephan
Saalfeld
m
a
k
e sure that sta
t
ic pa
r
ame
t
ers do not override ea
c
h
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalf
e
ld
remov
e
spurious import
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfeld
workaround
O
racle java
c
g
e
n
e
r
ics issu
e
commit
|
commitdiff
|
tree
2012-06-05
S
t
ephan Saal
f
eld
multi-layer-mosaic uses Param
/
ParamOptimize
.
setup(S
t
ring
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Step
h
an Sa
a
lfeld
montage
l
aye
r
s uses
ParamOptimize
.
se
t
up in
s
tea
d
of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
S
t
e
pha
n
Saalfeld
d
o
not fix a random ti
l
e
i
f n
o
n
e i
s
f
i
xed
commit
|
commitdiff
|
tree
2012-05-29
Stephan Sa
a
l
f
eld
Condens
e
d
.
mailmap
commit
|
commitdiff
|
tree
2012-05-29
St
e
phan Saalfeld
Added
.
mai
l
ma
p
commit
|
commitdiff
|
tree
2012-05-21
S
tephan Sa
a
lfeld
Merge bran
c
h 'mast
e
r' into
r
egu
l
arized-a
f
f
i
ne
commit
|
commitdiff
|
tree
next