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externalized DistortionCorrection.run to enable calling without UI
2014-06-05
Ste
p
han Saal
f
eld
e
x
t
erna
l
ized Di
s
torti
o
nCorrec
t
ion
.
run to enable cal
l
ing
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
Stephan Saalfeld
Eclipse autu-cosmetics in
D
istortionCor
r
ection
commit
|
commitdiff
|
tree
2014-05-19
S
t
e
phan
S
aalfeld
Merge br
a
n
ch
'
m
as
t
er' into intensity-transform
commit
|
commitdiff
|
tree
2014-05-19
Stephan
Saalfeld
u
se
standard writer for coor
d
inate
t
ransforms
commit
|
commitdiff
|
tree
2013-10-10
Stephan Saa
l
feld
replaced plugins
.
conf
i
g
w
i
t
h
t
he Fiji version
commit
|
commitdiff
|
tree
2013-09-20
S
teph
a
n
S
aalfeld
Me
r
ge
branch 'm
a
s
ter' o
f
ssh://repo
.
or
.
cz/
s
rv/gi
t
/tra
k
em2
commit
|
commitdiff
|
tree
2013-09-19
S
t
ephan Saalfeld
Merge branch 'master' of ssh:
/
/repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Stephan Saal
f
el
d
Parallel p
a
irOverlappingTil
e
s di
d
not work
a
nd reporte
d
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
S
t
ephan Saalfeld
Me
r
ge branch 'master' of
ssh://r
e
po
.
or
.
cz/sr
v
/gi
t
/trakem2
commit
|
commitdiff
|
tree
2013-09-16
St
e
phan Saa
l
feld
re-added
l
e
gac
y
o
p
tim
i
z
er for spr
i
ng mes
h
es, this
w
o
u
ld
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saal
f
eld
T2-NIT/pom
.
xml can
i
nherit ver
s
ion number from parent
commit
|
commitdiff
|
tree
2013-08-14
Stepha
n
Saalfeld
added missing depende
n
cies to java3d core-
u
tils and
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
Stephan
Saalfeld
s
e
t pa
r
e
nt pom of pom-trakem2
to pom-
f
iji
.
2
.
0
.
0-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
St
e
p
h
an Saa
l
feld
Merge bran
c
h 'spring-mesh2' of ssh://repo
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
S
tephan Saa
l
fe
l
d
Merge br
a
nch 'master' into
s
p
rin
g
-mesh2
commit
|
commitdiff
|
tree
2013-08-12
S
tephan Saalfeld
raised m
p
i
c
b
g
dependency v
e
r
s
ion to 0
.
6
.
1-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
S
t
ep
h
an S
a
alfel
d
rais
e
d dependen
c
y to Simple_Ne
u
r
i
te_T
r
ac
e
r to 2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
Step
h
a
n
Saalfeld
Merge br
a
nch 'mas
t
er' into spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
S
t
ephan
S
a
alfeld
adde
d
comments and au
t
o-finalize in D
i
sto
r
tionCorr
e
c
tio
n
/NLT
commit
|
commitdiff
|
tree
2013-08-12
S
tepha
n
Saalfel
d
added mpic
b
g
.
version as maven property
,
commit
|
commitdiff
|
tree
2013-05-06
Stephan Saalfeld
trac
k
mov
e
of the imglib1 depe
n
de
n
cy
commit
|
commitdiff
|
tree
2013-04-22
Step
h
an S
a
al
f
eld
Merge br
a
nch 'master' int
o
spri
n
g-mesh
2
commit
|
commitdiff
|
tree
2013-03-05
S
t
ephan Saalfeld
Merge branch '
m
aster' into
s
p
r
i
n
g
-mesh2
commit
|
commitdiff
|
tree
2013-01-18
Stephan Saalfeld
u
se arraylist
where arra
y
lists ar
e
retur
n
ed
commit
|
commitdiff
|
tree
2013-01-16
S
tephan Saalfeld
a
d
just mpic
b
g sprin
g
-mesh2 which
n
e
e
ds less
d
amping
commit
|
commitdiff
|
tree
2013-01-11
Stephan
Sa
a
lf
e
ld
Fixed bug in Patch
.
g
e
tFullCoordinate
T
ransform that
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan S
a
alfe
l
d
Changed
f
ixedPatches/Til
e
s inpu
t
collection to Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Ste
p
h
a
n Saalfeld
Pa
i
r constructor
has
t
o
be
p
u
blic
commit
|
commitdiff
|
tree
2013-01-10
Stephan
Sa
a
lfeld
f
o
rgot to
s
et isAligne
d
flag i
n
elast
i
c layer ali
g
nment
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Steph
a
n Saa
l
feld
e
las
t
ic montage p
a
ram must
be public
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saalfeld
ad
d
ed
Patch
.
getFu
l
lCordinateTr
a
nsform() which generates a
commit
|
commitdiff
|
tree
2013-01-07
Stephan
Saalfel
d
* remove
d
isAligne
d
from Abstract P
a
r
a
m class
commit
|
commitdiff
|
tree
2013-01-05
Stephan Saalfeld
877:
it
is
l
ega
l
for lay
e
r
T
hing to b
e
nu
l
l
commit
|
commitdiff
|
tree
2012-12-21
Step
h
a
n Saa
l
fe
l
d
C
o
rrec
t
ed sever
a
l long-standing issues with
S
IFT-linea
r
and
commit
|
commitdiff
|
tree
2012-12-19
Ste
p
h
an
S
aalfeld
RegularizedLay
e
rAlignment go
t
more flexib
l
e
A
P
I
m
ethods
a
nd
commit
|
commitdiff
|
tree
2012-12-19
S
t
ephan
S
aalfeld
cle
a
ring ca
c
he in layer alignmen
t
must b
e
default tr
u
e
commit
|
commitdiff
|
tree
2012-12-19
Stephan
Saal
f
eld
p
r
int op
t
imizer results an
d
do not
print "matchin
g
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Step
h
a
n Saalfeld
do not r
e
move empty layers in layer alignment
commit
|
commitdiff
|
tree
2012-11-07
St
e
phan
S
aalfe
l
d
fixed version number of mpicbg d
e
pend
e
ncy
commit
|
commitdiff
|
tree
2012-11-07
Stephan Sa
a
lfeld
fixed mer
g
e error: moved Rob
u
stNormalize
L
o
calContra
s
t
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
Steph
a
n
Saal
f
e
ld
multi-threaded
R
obustNormalizeLocalContrast main bo
d
y
commit
|
commitdiff
|
tree
2012-09-01
St
e
ph
a
n
Saal
f
eld
Removed DisplayCanvas
.
setDrawingColor(int,i
n
t,
b
o
o
l
ean
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Stephan Saal
f
eld
Me
r
ge bra
n
c
h
'maste
r
' of s
s
h
:
//repo
.
or
.
cz
/
s
rv/g
i
t/trakem2
commit
|
commitdiff
|
tree
2012-08-31
Step
h
an
Saalfeld
ad
d
ed experimental loc
a
l
c
o
ntrast
e
nhanc
e
r RobustNormaliz
e
Lo
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
Stephan
Sa
a
lfeld
removed obs
o
lete choice fr
o
m al
i
gn lay
e
r
s
di
a
log
commit
|
commitdiff
|
tree
2012-06-26
Stepha
n
Saalfe
l
d
split
e
la
s
tic
montage dialog for
b
lock matching and use
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfeld
Merg
e
bra
n
ch
'
master' of ssh
:
//rep
o
.
or
.
cz/srv/git/trake
m
2
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saa
l
feld
use and do not
ignore
alpha in helper method
commit
|
commitdiff
|
tree
2012-06-21
Stephan
S
aa
l
feld
use
t
he new sequentia
l
dialogs in
"
montage" for a selec
t
ion
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
Stephan
Saalfel
d
Merge branch 'master
'
o
f
ssh
:
//repo
.
o
r
.
c
z
/
srv/git/trakem2
commit
|
commitdiff
|
tree
2012-06-20
Stepha
n
S
aalfel
d
fix
e
d ra
n
ge
c
heck i
n
layer al
i
g
nme
n
t
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saalfeld
fixed con
d
ition check in Align L
a
yers for regul
a
rization
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
Steph
a
n Saalfeld
Merg
e
branch 'master
'
into reg
u
la
r
ized-
a
ffine
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfel
d
do not consider dis
c
o
nn
e
cted tile
s
commit
|
commitdiff
|
tree
2012-06-08
Ste
p
h
a
n
Saalfeld
Me
r
g
e
branch 'regula
r
i
z
ed
-
affine' of ssh:
/
/repo
.
o
r
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
Stepha
n
Saalfeld
pre
-
a
l
i
g
n graphs and ma
t
c
h only
overlapping tiles
commit
|
commitdiff
|
tree
2012-06-08
S
t
ephan Sa
a
l
feld
pre-align graphs and match onl
y
overlapping tiles
commit
|
commitdiff
|
tree
2012-06-08
St
e
phan Sa
a
lfeld
i
nitial
i
ze
Tile models and
n
ot on
l
y patches in alignGraphs
commit
|
commitdiff
|
tree
2012-06-08
St
e
p
h
an Saalfel
d
c
h
anged a
l
ig
n
Graphs inp
u
t
co
l
lections
f
r
o
m
Set to Iterable
commit
|
commitdiff
|
tree
2012-06-08
S
tepha
n
Saal
f
eld
ma
k
e sure
t
hat static parameters
d
o not
override
e
a
c
h
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Step
h
an Saalfeld
re
m
ove spurious imp
o
r
t
commit
|
commitdiff
|
tree
2012-06-05
Ste
p
han Saalfeld
workaround
Or
a
c
l
e ja
v
ac generics issu
e
commit
|
commitdiff
|
tree
2012-06-05
Stephan
Saal
f
eld
multi-layer-mosa
i
c
uses Param/
P
aramOpt
i
mi
z
e
.
setu
p
(
Str
i
ng
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saal
f
e
ld
montage l
a
y
e
rs uses P
a
r
a
mOptim
i
ze
.
setup instead of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan S
a
alfeld
do n
o
t fix a random til
e
if none i
s
fixed
commit
|
commitdiff
|
tree
2012-05-29
Stephan Saalfeld
C
ondense
d
.
m
ai
l
m
ap
commit
|
commitdiff
|
tree
2012-05-29
Step
h
an Saalfeld
Added
.
mailm
a
p
commit
|
commitdiff
|
tree
2012-05-21
Ste
p
han Saalfeld
M
e
rge branch 'master' into regular
i
zed-affine
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
a
dded *None
*
f
i
eld to layer range reference selection
commit
|
commitdiff
|
tree
2012-05-21
Stepha
n
Sa
a
lfeld
spli
t
A
l
i
g
n
.
Pa
r
amOptim
i
ze
d
ialogs in p
i
ec
e
s that fit
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
St
e
phan Saalf
e
ld
added Ge
n
ericAffineT
i
l
e2D
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
generalized AbstractAffineTile2D generic parame
t
er
commit
|
commitdiff
|
tree
2012-05-15
S
tepha
n
S
aalfeld
track refact
o
r
i
ng
in mpicbg
.
commit
|
commitdiff
|
tree
2012-05-09
Steph
a
n Saal
f
eld
adde
d
regularized affine layer align
m
ent,
commit
|
commitdiff
|
tree
2012-03-28
Stephan Saalfe
l
d
fixed createIma
g
e
(
): u
s
e premultiplied
raster
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
do not pr
i
nt the mipmap
s
c
a
le
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
for no
w
,
d
o no
t
us
e
pr
e
-
multiplied alph
a
since it does
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
S
t
ep
h
an Saalfe
l
d
Fixed w
r
ong paintin
g
of P
a
tches
w
hen usin
g
a
downsa
m
pler
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
Do
w
n
s
am
p
lerMipMaps now c
o
nsist
e
ntly u
s
e
s
combined downsam
p
li
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Sa
a
lfeld
f
ixed DownsamplerMipMaps
b
lending merged
alpha i
n
to
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
Downsampler test still shows it b
e
ing sig
n
i
ficantly
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
Fixed Dow
n
sampler: range
ch
e
ck
i
n
byte conversion was
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
S
t
ephan Saa
l
feld
Mer
g
e bran
c
h '
i
ntegr
a
l' o
f
ssh
:
//repo
.
or
.
cz/s
r
v/git
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
S
tephan Saalfeld
added
m
is
s
i
ng packa
g
e
to Fakefile
commit
|
commitdiff
|
tree
2012-03-08
Stephan Saalfeld
Merge
b
ranch 'm
a
ster'
o
f ss
h
://repo
.
or
.
c
z
/
srv/git
/
tra
k
em2
commit
|
commitdiff
|
tree
2012-03-08
Stephan Saalfeld
fix l
o
cal scale estimate
commit
|
commitdiff
|
tree
2012-03-07
Stephan
S
aalfe
l
d
added
getLocalScal
e
(x,y) method
t
o P
a
tch
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfeld
patch do
e
s
not
p
r
o
pagate NonInvert
i
bleModelException
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
S
t
ephan Saalfeld
Merg
e
b
r
anch 'master'
of ssh://repo
.
or
.
cz/srv
/
git/trakem2
commit
|
commitdiff
|
tree
2012-03-07
Stephan
Saalf
e
l
d
added methods to fetc
h
the clo
s
est triangle of a transform
.
.
.
commit
|
commitdiff
|
tree
2012-02-27
Steph
a
n S
a
a
lfeld
in
the
m
idd
l
e
o
f
.
.
.
am
e
nd with fi
n
al com
m
i
t
commit
|
commitdiff
|
tree
2012-02-27
Stephan S
a
alfeld
demons
t
rate byte conversion in an extra loop to be
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stephan Saalfeld
Merge branch
'integral' of
ss
h
://r
e
po
.
o
r
.
c
z
/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stephan Saalfeld
Dow
n
sampler
f
inished
.
I have
tested
se
v
e
r
al varia
n
ts
.
.
.
commit
|
commitdiff
|
tree
2012-02-24
Stephan Saalfeld
experim
a
ntal co
m
mit:
commit
|
commitdiff
|
tree
2012-02-23
Stephan Saalfeld
Merge branch '
i
ntegral'
of ssh://repo
.
or
.
cz/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-23
St
e
p
h
an Saalfeld
Downsampler with
alpha
-
chan
n
els rendering
into byte
.
.
.
commit
|
commitdiff
|
tree
2012-02-22
Step
h
an Saalfeld
Me
r
ge branch '
m
aster' of ssh://repo
.
or
.
c
z
/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-02-22
Stephan Saalfeld
se
t
interpo
l
ation mode to actually interpolate masks
commit
|
commitdiff
|
tree
2011-10-01
Ste
p
han Saalfeld
mak
e
I
J
.
l
og
t
o
Utils
.
log in Elast
i
cL
a
yerAlignmen
t
commit
|
commitdiff
|
tree
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