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externalized DistortionCorrection.run to enable calling without UI
2014-06-05
S
tephan Saalfeld
exte
r
nalized
D
ist
o
rtionCorre
c
t
ion
.
run to enable calling
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
S
tephan Saal
f
eld
Eclipse autu-c
o
smetics in Dist
o
r
t
ionCorrection
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saalfeld
Merge br
a
nch 'master' into intensity-transform
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saa
l
feld
use
stan
d
ard writer
f
or coordinatetransforms
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saalf
e
ld
depend on j
a
vax
.
me
d
ia for jai
commit
|
commitdiff
|
tree
2014-05-19
S
t
ephan Saalfe
l
d
a
dded methods for down
s
ampling more than one level
commit
|
commitdiff
|
tree
2013-10-10
S
tephan Saalfe
l
d
re
p
l
a
ce
d
p
l
ug
i
ns
.
c
onfig wi
t
h t
h
e
Fiji v
e
rsi
o
n
commit
|
commitdiff
|
tree
2013-09-20
Ste
p
han Saalfel
d
Mer
g
e
b
ranch
'
ma
s
ter'
o
f ssh://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Stephan Saal
f
eld
Merge
b
ran
c
h 'mas
t
er' of ssh://repo
.
or
.
c
z/srv/git
/
trakem2
commit
|
commitdiff
|
tree
2013-09-19
S
tepha
n
Saa
l
f
e
ld
Par
a
llel
pai
r
OverlappingTil
e
s
did not work a
n
d reporte
d
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
St
e
pha
n
Saalfeld
Merge branch 'master'
of ssh:
/
/
r
epo
.
or
.
cz/srv/
g
i
t
/trake
m
2
commit
|
commitdiff
|
tree
2013-09-16
S
t
ephan
S
aalfeld
re-ad
d
ed
leg
a
c
y
o
pt
i
mizer for spr
i
ng
m
eshes, t
h
is w
o
u
ld
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
St
e
phan Saalfeld
T2-NI
T
/
pom
.
xml can in
h
erit ve
r
sion number
f
r
o
m parent
commit
|
commitdiff
|
tree
2013-08-14
Stephan
Saalfe
l
d
a
d
ded missing de
p
endencies to j
a
va3d core-
u
t
ils a
n
d
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
Stepha
n
Saalf
e
ld
s
e
t
p
a
r
en
t
pom of
pom-trakem2 to pom
-
fiji
.
2
.
0
.
0-SNA
P
SH
O
T
commit
|
commitdiff
|
tree
2013-08-12
St
e
phan
S
a
alfeld
Merg
e
b
ranch 'sprin
g
-mes
h
2'
o
f
ssh://r
e
po
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
Stephan Sa
a
lfe
l
d
Merge
b
ranch 'master' into s
p
ring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfe
l
d
raised mpi
c
bg dependency
v
ersion to 0
.
6
.
1-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
Step
h
a
n
S
a
alfeld
rai
s
ed
d
e
pendency to Simp
l
e_Neurit
e
_
Tracer to 2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
Stephan S
a
alfeld
Me
r
ge b
r
anch
'm
a
ster' into
s
p
ring
-
mesh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
added comments and
a
uto-finalize in Distorti
o
nCorrectio
n
/NLT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
added mpic
b
g
.
version as maven
property,
commit
|
commitdiff
|
tree
2013-05-06
Stephan Saal
f
eld
tr
a
ck mov
e
of the imglib1 depend
e
ncy
commit
|
commitdiff
|
tree
2013-04-22
Stephan Saalfeld
Merg
e
branch 'master'
i
nto spring-me
s
h2
commit
|
commitdiff
|
tree
2013-03-05
Step
h
an Saal
f
eld
Me
r
g
e
branc
h
'm
a
ster'
into
spring-mes
h
2
commit
|
commitdiff
|
tree
2013-01-18
Stephan Sa
a
lfeld
use arraylis
t
wh
e
r
e
arra
y
lists are r
e
tu
r
ne
d
commit
|
commitdiff
|
tree
2013-01-16
Stephan Saalfeld
adjust
m
pi
c
bg s
p
ring-
m
esh2 which needs less damping
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saalfeld
Fi
x
e
d
bu
g
in Pat
c
h
.
getFullCoordinateTransfo
r
m
t
h
a
t
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Steph
a
n Saalfeld
Change
d
fixedPatche
s
/Tiles i
n
p
ut c
o
ll
e
ction to Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stepha
n
Saalfeld
Pa
i
r const
r
uctor has
to be public
commit
|
commitdiff
|
tree
2013-01-10
Stephan Saalfeld
forgot
to s
e
t
isAl
i
gned flag in elastic layer alignm
e
nt
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Stephan S
a
alfeld
el
a
stic montage par
a
m
m
ust be pub
l
ic
commit
|
commitdiff
|
tree
2013-01-07
Steph
a
n Saalfeld
a
d
d
ed Patch
.
getF
u
llCord
i
nat
e
Transform() which generate
s
a
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saal
f
eld
* removed
i
s
A
ligned from Abstract Param class
commit
|
commitdiff
|
tree
2013-01-05
Stephan Saalfeld
877: it is legal for layerTh
i
ng to
b
e null
commit
|
commitdiff
|
tree
2012-12-21
Step
h
an Sa
a
lfeld
Corrected
s
everal long-standing is
s
ues
w
ith SIFT-lin
e
a
r
a
n
d
commit
|
commitdiff
|
tree
2012-12-19
Step
h
an Saalfe
l
d
R
egula
r
ized
L
ayerAlignment got more flexib
l
e
API met
h
ods and
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
clear
i
ng cache in layer
al
i
gnment must
be d
e
fault tr
u
e
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
pr
i
nt
o
ptim
i
z
e
r results a
n
d do not
pri
n
t "
m
atchin
g
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Step
h
an Sa
a
lfeld
do not
re
m
ove e
m
pty layers in laye
r
ali
g
nment
commit
|
commitdiff
|
tree
2012-11-07
S
t
e
p
han
S
a
a
lfeld
fixed version nu
m
b
er
o
f m
p
i
c
b
g
dep
e
n
dency
commit
|
commitdiff
|
tree
2012-11-07
St
e
phan Saalfeld
fixed merge
error: moved
Ro
b
ustNormalizeLocalContra
s
t
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
Stephan Saalfeld
multi-threa
d
ed Robus
t
NormalizeLocal
C
ontrast main body
commit
|
commitdiff
|
tree
2012-09-01
Steph
a
n
Sa
a
l
f
eld
Remov
e
d
Di
s
p
l
ay
C
anvas
.
setDra
w
ingC
o
lor(int,i
n
t,b
o
olean
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Stephan Saal
f
eld
Merge
branch 'ma
s
ter' of ss
h
://rep
o
.
or
.
cz/srv/git/tr
a
kem2
commit
|
commitdiff
|
tree
2012-08-31
St
e
phan Saalfeld
added exp
e
rime
n
tal local contrast enhancer RobustNormalizeLo
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
S
t
e
p
han Saalfeld
r
emoved obs
o
lete choice from align layers dialog
commit
|
commitdiff
|
tree
2012-06-26
Step
h
an Saalfeld
s
p
lit
elastic mon
t
age dial
o
g fo
r
bloc
k
matching and use
commit
|
commitdiff
|
tree
2012-06-26
S
t
eph
a
n Saalfeld
M
e
rge b
r
a
n
ch 'master' of ssh://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfeld
use and do no
t
ignore alpha in helpe
r
met
h
od
commit
|
commitdiff
|
tree
2012-06-21
Stephan
Saalfeld
use the new sequential dialo
g
s in
"
mont
a
ge" for a selection
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
Stephan Saalfeld
Merge br
a
nch 'm
a
ster' of
s
sh://repo
.
o
r
.
cz/
s
rv/git/trakem2
commit
|
commitdiff
|
tree
2012-06-20
S
tephan Saalfeld
f
ixed ra
n
ge check in lay
e
r al
i
gn
m
ent
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saal
f
el
d
fixed condition check in Al
i
gn
L
ayer
s
for regularizatio
n
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
Ste
p
han Saalf
e
ld
Merg
e
b
ranch
'
master'
i
nto regula
r
i
zed-af
f
ine
commit
|
commitdiff
|
tree
2012-06-08
S
t
ephan Saalfeld
do not consider disconnected tiles
commit
|
commitdiff
|
tree
2012-06-08
St
e
phan
Saalf
e
ld
Merge branch 'regularized-affine' of s
s
h://repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
pre-align graphs and match only over
l
appi
n
g til
e
s
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalf
e
l
d
pre-align
g
raphs and
m
a
t
c
h only overlapping t
i
les
commit
|
commitdiff
|
tree
2012-06-08
Step
h
an
S
a
alfeld
initiali
z
e
Tile models
a
nd
not o
n
ly patches in a
l
ignGr
a
phs
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saal
f
e
l
d
ch
a
n
ged al
i
gnGraphs input collections from Set to Iterab
l
e
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
make
s
ure that stati
c
parame
t
e
rs d
o
not override each
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfe
l
d
remove s
p
uri
o
us import
commit
|
commitdiff
|
tree
2012-06-05
S
t
e
p
han S
a
alfeld
w
o
rkaround
Oracl
e
javac gener
i
cs i
s
s
ue
commit
|
commitdiff
|
tree
2012-06-05
Step
h
an
Saalfeld
multi-layer-mosaic uses
P
aram/ParamOptimize
.
s
e
tup(Str
i
n
g
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saa
l
feld
mon
t
ag
e
lay
e
rs use
s
P
a
ramOptimize
.
s
etup
i
n
stead of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Ste
p
han Saal
f
eld
do not fix a random tile if none
is
f
ixed
commit
|
commitdiff
|
tree
2012-05-29
Steph
a
n Saalfeld
Condensed
.
m
ailmap
commit
|
commitdiff
|
tree
2012-05-29
Step
h
an
Saalfel
d
Added
.
mailmap
commit
|
commitdiff
|
tree
2012-05-21
S
tephan Saalfeld
Merg
e
branch 'mas
t
er'
into regulariz
e
d-aff
i
ne
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalf
e
l
d
added *Non
e
*
fi
e
ld to laye
r
r
an
g
e ref
e
renc
e
s
e
l
e
ction
commit
|
commitdiff
|
tree
2012-05-21
St
e
phan
S
a
alfeld
split Align
.
ParamOptimize dialogs in
pieces
t
hat fit
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
S
t
ephan Saal
f
eld
added Ge
n
ericA
f
fineTile2
D
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
generalize
d
AbstractAffineTile2D generi
c
p
ar
a
meter
commit
|
commitdiff
|
tree
2012-05-15
Stephan Saalfeld
t
rac
k
r
e
f
actor
i
ng
i
n mpicbg
.
commit
|
commitdiff
|
tree
2012-05-09
Stephan Saalfe
l
d
adde
d
re
g
ula
r
ized
affi
n
e la
y
e
r
a
lignment,
commit
|
commitdiff
|
tree
2012-03-28
Stephan S
a
alfeld
fixed createImage(): use pre
m
ultipli
e
d
r
a
s
t
er
commit
|
commitdiff
|
tree
2012-03-27
Ste
p
han Saalfeld
d
o
not pr
i
nt
t
he mipmap scale
commit
|
commitdiff
|
tree
2012-03-27
Stephan S
a
alfeld
fo
r
now, do n
o
t use pre-mu
l
tiplied alpha sin
c
e
i
t
doe
s
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Step
h
a
n
Saalfeld
Fixe
d
wrong
p
a
inting of Pat
c
hes when u
s
ing a dow
n
sample
r
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan
Saalfeld
D
owns
a
m
p
l
erMipMaps no
w
c
o
nsi
s
tently use
s
combined
downsampli
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Ste
p
han Saalf
e
ld
fi
x
ed Dow
n
s
amplerMi
p
Maps
blending merged
a
lpha into
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stepha
n
Saalfe
l
d
Downsampler test s
t
ill shows it bein
g
significa
n
tly
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
S
t
e
phan S
a
alfeld
Fixed Downsampler: range check in
byte
conversion was
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
S
tephan Sa
a
lfeld
Merge
b
ranc
h
'integral' of ssh://repo
.
or
.
cz/srv/g
i
t
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
Step
h
an Saalfeld
added m
i
ssing pack
a
ge
to Fake
f
ile
commit
|
commitdiff
|
tree
2012-03-08
S
t
e
phan Sa
a
lfeld
Merge branch 'mas
t
er' of ssh://rep
o
.
or
.
cz/srv/git/tra
k
em2
commit
|
commitdiff
|
tree
2012-03-08
S
t
ephan Saalfeld
fi
x
loca
l
scale estimate
commit
|
commitdiff
|
tree
2012-03-07
Stephan S
a
alfeld
added getLocalScale
(
x
,
y) met
h
od to
P
atch
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfeld
patch does not p
r
o
p
agat
e
NonInvertible
M
odelExceptio
n
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
Stepha
n
Saa
l
feld
Me
r
ge branch 'master' of ssh://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-03-07
St
e
phan
Saalfeld
added m
e
thod
s
to fetch the close
s
t
trian
g
le of a
t
ransform
.
.
.
commit
|
commitdiff
|
tree
2012-02-27
Stephan Saalfeld
i
n
the middle of
.
.
.
amend with final c
o
mmit
commit
|
commitdiff
|
tree
2012-02-27
Stephan Saalfeld
demonstrate byt
e
conversion in an
extra lo
o
p to be
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stephan Saalfeld
Merge branch 'integ
r
a
l
' of ss
h
://repo
.
or
.
c
z/srv
/
git
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stephan
S
aalfeld
D
owns
a
mpler fin
i
shed
.
I ha
v
e tested several varian
t
s
.
.
.
commit
|
commitdiff
|
tree
2012-02-24
S
tephan Saalfeld
experimantal commit:
commit
|
commitdiff
|
tree
2012-02-23
Step
h
a
n
Saa
l
feld
Merge branch 'int
e
gra
l
' of ssh
:
/
/
repo
.
or
.
cz/srv
/
git
.
.
.
commit
|
commitdiff
|
tree
2012-02-23
S
tep
h
an Saalfel
d
D
o
wns
a
m
pler wit
h
alpha-channels r
e
n
d
e
r
ing into
b
y
t
e
.
.
.
commit
|
commitdiff
|
tree
2012-02-22
Stephan Saalfeld
Merge
branch '
m
aster' o
f
ssh://repo
.
o
r
.
cz/srv/
g
it
/
trakem2
commit
|
commitdiff
|
tree
next