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added dependency to jitk-tps-1.3.2 and managed trakem2_tps
2016-02-06
Stephan Saalf
e
ld
a
dded dependency to
j
itk-tps-1
.
3
.
2 and
ma
n
ag
e
d trakem2_tps
commit
|
commitdiff
|
tree
2016-01-09
Step
h
an Sa
a
lfel
d
actually
u
se
m
ultipleh
y
pothes
e
s f
l
ag an
d
other fixes
commit
|
commitdiff
|
tree
2016-01-08
Stephan Saalfeld
enabl
e
multiple hypotheses matching in Tra
k
EM2's distortion
.
.
.
commit
|
commitdiff
|
tree
2016-01-08
S
tephan
S
aalfeld
enabl
e
multi
p
le hy
p
othe
s
es matching in Align backwards
.
.
.
commit
|
commitdiff
|
tree
2016-01-08
S
t
ephan Saalfeld
use mi
p
map
t
h
reads number property fo
r
parall
e
l
int
e
nsity
.
.
.
commit
|
commitdiff
|
tree
2016-01-08
Steph
a
n
Saa
l
f
e
ld
rend
e
r i
n
tensity corrected im
a
ges in a single thread
.
.
.
commit
|
commitdiff
|
tree
2016-01-08
Stephan Saa
l
f
e
l
d
prepar
i
ng
r
elease pom-trakem2-2
.
0
.
0,
Ve
c
to
r
String-2
.
.
.
commit
|
commitdiff
|
tree
2015-09-04
Steph
a
n S
a
alfe
l
d
nex
t
d
evelop
m
en
t
cycle
commit
|
commitdiff
|
tree
2015-09-03
Stephan Saalf
e
ld
pom-t
r
akem2-1
.
4
.
0
commit
|
commitdiff
|
tree
2015-09-03
St
e
pha
n
S
a
alfeld
added multi-thr
e
ading for coeff
i
c
i
ents matching
commit
|
commitdiff
|
tree
2015-09-03
Steph
a
n Saalf
e
ld
p
ut
m
atch intensities comma
n
ds into work
e
rs to block
.
.
.
commit
|
commitdiff
|
tree
2015-09-02
Stephan Saalfeld
Working version without multi-t
h
read
i
n
g
and bu
r
eaucrats
commit
|
commitdiff
|
tree
2015-09-02
Step
h
an Saalfeld
incl
u
d
e
d match i
n
t
en
s
i
t
ies plugin, build with
S
NAPS
H
OTS
.
.
.
commit
|
commitdiff
|
tree
2015-08-31
Ste
p
han Saal
f
e
ld
Merge pull
r
e
q
u
est #
1
1 from hanslov
s
ky/
m
aster
commit
|
commitdiff
|
tree
2015-04-07
S
t
epha
n
Saalfeld
next develop
m
ent cyc
l
e
commit
|
commitdiff
|
tree
2015-04-07
Step
h
an Saalfeld
re
l
ease po
m
-
t
rakem2-1
.
3
.
3
commit
|
commitdiff
|
tree
2015-03-26
Stephan Saalfel
d
re-release pom
-
t
rakem2-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-24
Stephan Sa
a
lfel
d
next deve
l
opment
cycle
commit
|
commitdiff
|
tree
2015-03-24
S
tephan Saalfeld
r
e-relea
s
e pom-trakem
2
-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-19
Stephan Saalf
e
ld
next develo
p
m
ent
c
y
cl
e
(problem
with Eclipse Kep
l
e
r
.
.
.
commit
|
commitdiff
|
tree
2015-03-19
Stephan Saalfeld
release pom
-
trakem2-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-07
Stephan Saalfe
l
d
ne
x
t
d
evelopment
cyc
l
e
commit
|
commitdiff
|
tree
2015-03-07
Stephan S
a
alfeld
relea
s
e
commit
|
commitdiff
|
tree
2015-02-14
St
e
pha
n
Saalfeld
ne
x
t d
e
velopment cycle
commit
|
commitdiff
|
tree
2015-02-14
St
e
phan Saalf
e
ld
release
commit
|
commitdiff
|
tree
2015-02-14
S
t
e
p
han Sa
a
lfeld
rel
e
ase
commit
|
commitdiff
|
tree
2015-01-14
Ste
p
han
Saalf
e
ld
adde
d
gett
e
r
s
f
or m
l
s2 p, q, a
n
d w
commit
|
commitdiff
|
tree
2015-01-12
Stephan
Saal
f
eld
A
d
ded Eri
c
Trautman's check f
o
r num
b
er
o
f threads to
.
.
.
commit
|
commitdiff
|
tree
2015-01-12
Stephan Saal
f
e
l
d
F
ixed Value
2
N
o
iseF
i
l
ter
max export
commit
|
commitdiff
|
tree
2014-12-19
Stephan Saalfeld
bump to
n
e
xt deve
l
op
m
ent c
y
c
le
commit
|
commitdiff
|
tree
2014-12-19
Stephan Saalf
e
ld
Merge remote-tracking branch
'
o
rigin'
commit
|
commitdiff
|
tree
2014-12-19
Stephan Saalfeld
r
e
producible build pom
-
t
rakem2-
1
.
1
.
2
commit
|
commitdiff
|
tree
2014-12-19
S
t
e
phan Saalfeld
separated CoordinateTransform parts of lenscorrection
.
.
.
commit
|
commitdiff
|
tree
2014-12-18
Steph
a
n Saalfeld
added multiple leve
l
downsampling for ColorProcessor
commit
|
commitdiff
|
tree
2014-12-17
Stephan Saal
f
e
ld
bump to next devel
o
pment cycle
commit
|
commitdiff
|
tree
2014-12-17
Step
h
an Saalf
e
ld
second
try to make
r
e
p
r
oducib
l
e
b
ui
l
d pom-t
r
akem
2
-
1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-17
S
tephan Saalfeld
Merge bra
n
ch 'i
n
t
e
nsity-transform'
commit
|
commitdiff
|
tree
2014-12-13
St
e
pha
n
Saalfeld
bump to next development cycle
commit
|
commitdiff
|
tree
2014-12-13
S
t
epha
n
Saalfeld
repr
o
ducible build pom-trake
m
2
-
1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalfeld
Merge r
e
mo
t
e-track
i
ng b
r
an
c
h 'origin/m
a
s
t
er'
commit
|
commitdiff
|
tree
2014-12-12
Stephan
S
aa
l
f
e
ld
bump to new
d
evelopmen
t
cycle
commit
|
commitdiff
|
tree
2014-12-12
S
t
eph
a
n Saalfeld
reproducible build
p
om-trakem2-1
.
1
.
0
commit
|
commitdiff
|
tree
2014-12-12
Steph
a
n Sa
a
lfel
d
Merge branc
h
'ma
s
ter
'
o
f
github
.
c
o
m:trakem2/TrakEM2
commit
|
commitdiff
|
tree
2014-12-12
Steph
a
n Saalf
e
ld
added V
a
lueT
o
Noise filter whi
c
h
f
ills a
given inten
s
ity
.
.
.
commit
|
commitdiff
|
tree
2014-11-12
Step
h
an
Saalfel
d
Upda
t
e README
commit
|
commitdiff
|
tree
2014-11-12
Stephan S
a
a
l
feld
Update README
commit
|
commitdiff
|
tree
2014-11-07
S
t
ephan Saalfeld
M
erge branch 'ma
s
ter'
i
nto c
o
ord
X
fmFix
commit
|
commitdiff
|
tree
2014-11-07
Stephan
Saa
l
feld
Merge remote-tr
a
cking bra
n
c
h
'origin
/
i
ntensity-transfor
m
'
commit
|
commitdiff
|
tree
2014-10-04
Steph
a
n
Saa
l
feld
added RobustNorma
l
izedLocal
C
ontra
s
t
Filte
r
, fast and
.
.
.
commit
|
commitdiff
|
tree
2014-10-04
Stephan Saalfel
d
Changed default block radius in Normali
z
eLocal
C
ont
r
ast
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan Sa
a
lf
e
l
d
auto-removed some tra
i
n
ing whit
e
space
s
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saa
l
fel
d
adde
d
run method th
a
t does not need
a
worker for easier
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan
S
a
a
l
f
eld
auto-removed some t
r
ailing whitespaces
commit
|
commitdiff
|
tree
2014-10-02
S
t
ephan Saal
f
eld
parallelized i
n
ters
e
ction tests for p
a
irO
v
e
rlappingTiles
commit
|
commitdiff
|
tree
2014-10-02
Steph
a
n Saa
l
fe
l
d
auto-finali
z
e
cons
t
a
n
t prope
r
t
i
e
s
and
p
arameter
s
in
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan
S
a
al
f
eld
thr
e
ad
s
afe U
t
ils
.
ensure(F
i
le)
commit
|
commitdiff
|
tree
2014-06-06
S
teph
a
n Saalfel
d
fixed b
u
g i
n
generati
o
n of al
p
hamasks
commit
|
commitdiff
|
tree
2014-06-05
Stephan Saalfel
d
exte
r
nalized Dis
t
ortionCorrection
.
run to enable calling
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
Stephan Saalfeld
Eclip
s
e autu-c
o
smetics in Dis
t
ort
i
onCorrection
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saalfeld
Merge br
a
nch 'mast
e
r' int
o
in
t
en
s
it
y
-transf
o
rm
commit
|
commitdiff
|
tree
2014-05-19
S
t
epha
n
Saalfeld
use standard writer fo
r
coordi
n
atetransforms
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saalf
e
ld
depend on javax
.
m
ed
i
a for jai
commit
|
commitdiff
|
tree
2014-05-19
S
tepha
n
Saalfel
d
added me
t
h
ods f
o
r downsampling more than one level
commit
|
commitdiff
|
tree
2013-10-10
S
t
e
phan
Saalf
e
ld
replaced plugins
.
conf
i
g
with the Fiji versi
o
n
commit
|
commitdiff
|
tree
2013-09-20
Stephan Saalf
e
ld
Merge branch 'master' of ssh:/
/
rep
o
.
o
r
.
cz/sr
v
/git/t
r
akem2
commit
|
commitdiff
|
tree
2013-09-19
Stephan
S
a
alfeld
Merge branch
'mas
t
e
r'
o
f ssh://repo
.
or
.
cz/sr
v
/git/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Stephan Saalf
e
ld
Parallel pai
r
OverlappingTiles di
d
not wor
k
an
d
reported
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saalfeld
Merge b
r
anch
'
mast
e
r' of
s
sh://
r
epo
.
or
.
c
z
/srv
/
git/trakem2
commit
|
commitdiff
|
tree
2013-09-16
S
tep
h
an Saalfeld
re-adde
d
l
egacy opti
m
izer for
spring mes
h
es,
t
his woul
d
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan
S
a
a
lfeld
T2-NIT/
p
om
.
xml
can
i
nherit
version
n
umbe
r
from p
a
r
e
nt
commit
|
commitdiff
|
tree
2013-08-14
Ste
p
h
a
n
Saalfeld
adde
d
m
issing dependenci
e
s to
j
a
va3d co
r
e-utils and
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
Stephan Sa
a
lfeld
set
parent pom of pom-trakem2 to pom-
f
iji
.
2
.
0
.
0-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan
Saalfeld
M
e
rg
e
b
r
anch 'spring-mesh2' of ssh
:
//rep
o
.
or
.
c
z
/
s
rv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
Steph
a
n Sa
a
lfeld
Mer
g
e branch 'master' into s
p
ring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
St
e
phan S
a
alfeld
r
a
ised mpicbg de
p
e
n
d
e
ncy version to
0
.
6
.
1-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
raised dependency to
Si
m
ple_Neurite_Tracer t
o
2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
S
tephan Saalfe
l
d
Merge branch 'master' into spring-me
s
h2
commit
|
commitdiff
|
tree
2013-08-12
Stephan S
a
al
f
eld
added comments
a
nd auto
-
f
inalize in Di
s
tortion
C
orrection/NLT
commit
|
commitdiff
|
tree
2013-08-12
Stephan
S
a
a
l
f
eld
ad
d
ed
mpicbg
.
versi
o
n as
maven pro
p
erty,
commit
|
commitdiff
|
tree
2013-05-06
Stephan Sa
a
l
f
eld
t
r
ac
k
move of
t
h
e
imglib1 dependency
commit
|
commitdiff
|
tree
2013-04-22
Ste
p
han Saal
f
e
l
d
Merge branc
h
'
m
aster' into
spring-mesh2
commit
|
commitdiff
|
tree
2013-03-05
Stepha
n
Saalfeld
Merg
e
branch '
m
a
s
ter' into sp
r
in
g
-mesh2
commit
|
commitdiff
|
tree
2013-01-18
Steph
a
n
Saalfeld
use arr
a
ylist where arr
a
ylists are re
t
urn
e
d
commit
|
commitdiff
|
tree
2013-01-16
Stephan Saalfeld
adj
u
st mpicbg spring-
m
e
sh2 which nee
d
s
les
s
damping
commit
|
commitdiff
|
tree
2013-01-11
Stephan S
a
al
f
eld
Fixed bug in Patch
.
getFullCoordinateTra
n
s
f
orm that
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saalfel
d
Changed
f
ixedPatches/Tiles input collection
t
o S
e
t
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saalfeld
Pair c
o
nstructor has to
be public
commit
|
commitdiff
|
tree
2013-01-10
Stephan
S
aalfeld
f
o
rgot
to set is
A
ligned fl
a
g
i
n
e
lastic la
y
er alignment
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
S
tephan Saal
f
eld
ela
s
t
ic mont
a
ge param
must be
public
commit
|
commitdiff
|
tree
2013-01-07
Steph
a
n Saalfeld
add
e
d P
a
tch
.
ge
t
Full
C
o
rdinateTransform() which genera
t
es a
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saalfe
l
d
* removed isA
l
igned from
A
bs
t
r
act
P
a
ram class
commit
|
commitdiff
|
tree
2013-01-05
Ste
p
han Saalfel
d
877: it i
s
le
g
al fo
r
l
a
yerThing t
o
be null
commit
|
commitdiff
|
tree
2012-12-21
S
teph
a
n Saalfeld
Corrected
several
long-stand
i
ng issues with SIFT-linear an
d
commit
|
commitdiff
|
tree
2012-12-19
St
e
pha
n
Saalfeld
RegularizedLayerAlignme
n
t
got mor
e
fle
x
ible
API me
t
hods and
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalf
e
ld
clearin
g
cache in layer alignment must be
default true
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalf
e
ld
print optimi
z
er r
e
sul
t
s
a
n
d do not prin
t
"matching
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
S
teph
a
n Saalfeld
do not remove empt
y
layer
s
in layer alignme
n
t
commit
|
commitdiff
|
tree
2012-11-07
Stephan Saal
f
eld
f
i
xed version
n
um
b
er
of
mpi
c
bg
dependency
commit
|
commitdiff
|
tree
2012-11-07
St
e
phan Saalfeld
f
ixe
d
merge e
r
ror: moved RobustNormal
i
zeLocalContrast
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
S
t
e
phan
S
aalfel
d
multi-threaded Robust
N
ormalizeLoca
l
Con
t
rast
main body
commit
|
commitdiff
|
tree
next