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enable multiple hypotheses matching in Align backwards compatible
2016-01-08
Stephan Saalfeld
enable
mul
t
i
ple hypotheses matc
h
ing in
Ali
g
n backwar
d
s
.
.
.
commit
|
commitdiff
|
tree
2016-01-08
S
t
ephan S
a
al
f
eld
use mipma
p
threads
n
umb
e
r
p
roperty for
parall
e
l int
e
nsity
.
.
.
commit
|
commitdiff
|
tree
2016-01-08
Ste
p
han Saal
f
eld
re
n
de
r
int
e
nsity corrected images in a single th
r
ead
.
.
.
commit
|
commitdiff
|
tree
2016-01-08
Stepha
n
Saalfeld
preparing release p
o
m-trakem2-2
.
0
.
0,
V
ectorString-2
.
.
.
commit
|
commitdiff
|
tree
2015-09-04
Stephan Saalfel
d
ne
x
t
developme
n
t
c
y
cl
e
commit
|
commitdiff
|
tree
2015-09-03
St
e
pha
n
Saalfeld
pom-trakem2-1
.
4
.
0
commit
|
commitdiff
|
tree
2015-09-03
Ste
p
han Saalfeld
added multi-threading
for coe
f
ficients
m
a
t
ching
commit
|
commitdiff
|
tree
2015-09-03
Stephan Saalfeld
put ma
t
ch inten
s
itie
s
commands into workers to b
l
ock
.
.
.
commit
|
commitdiff
|
tree
2015-09-02
Stepha
n
Saa
l
feld
Working
ve
r
s
ion witho
u
t
multi-th
r
eading
and bureaucra
t
s
commit
|
commitdiff
|
tree
2015-09-02
Step
h
an Saalfeld
included
m
atch int
e
n
s
i
tie
s
plugin, build
with SNAPSHOTS
.
.
.
commit
|
commitdiff
|
tree
2015-08-31
S
t
ephan Sa
a
l
f
e
ld
M
er
g
e pull request
#11 fr
o
m ha
n
slovsky/master
commit
|
commitdiff
|
tree
2015-04-07
Ste
p
han
S
aalfeld
next development
cycle
commit
|
commitdiff
|
tree
2015-04-07
S
teph
a
n Saalfel
d
r
elease p
o
m-trakem2-1
.
3
.
3
commit
|
commitdiff
|
tree
2015-03-26
Stephan Saalfeld
re
-
rele
a
se
pom
-
trakem2-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-24
Stephan Saalfeld
next development c
y
cle
commit
|
commitdiff
|
tree
2015-03-24
Stephan Saalf
e
ld
re-release
pom-trak
e
m2-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-19
St
e
phan Saalfeld
nex
t
d
e
velopment cycle (problem w
i
th
E
clipse
K
epler
.
.
.
commit
|
commitdiff
|
tree
2015-03-19
Stephan Saa
l
f
eld
release pom-trakem2-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-07
Step
h
an Saalfeld
next development c
y
cle
commit
|
commitdiff
|
tree
2015-03-07
S
tephan Saal
f
e
l
d
r
e
lease
commit
|
commitdiff
|
tree
2015-02-14
Ste
p
han Sa
a
lf
e
ld
next development cycle
commit
|
commitdiff
|
tree
2015-02-14
Step
h
an Saalfeld
release
commit
|
commitdiff
|
tree
2015-02-14
S
t
ephan Saalf
e
ld
release
commit
|
commitdiff
|
tree
2015-01-14
S
tephan Saalfeld
added get
t
er
s
f
or mls2
p
, q, and w
commit
|
commitdiff
|
tree
2015-01-12
S
t
eph
a
n Saalf
e
ld
Added
E
ric Tr
a
ut
m
an's check for n
u
mber of thre
a
d
s
t
o
.
.
.
commit
|
commitdiff
|
tree
2015-01-12
S
t
ephan S
a
alfe
l
d
Fi
x
ed Value2Nois
e
Filter ma
x
exp
o
r
t
commit
|
commitdiff
|
tree
2014-12-19
Stephan Saalf
e
ld
bump to ne
x
t de
v
elopmen
t
cycle
commit
|
commitdiff
|
tree
2014-12-19
Stephan Saa
l
fel
d
Merge
remote-tracking b
r
anch 'origin'
commit
|
commitdiff
|
tree
2014-12-19
Stephan Saalfeld
r
e
producible build
pom-trakem2-1
.
1
.
2
commit
|
commitdiff
|
tree
2014-12-19
Ste
p
han Saalfeld
separated C
o
or
d
inateTr
a
n
s
f
o
rm pa
r
t
s
of
l
enscorrecti
o
n
.
.
.
commit
|
commitdiff
|
tree
2014-12-18
S
tephan Saalfeld
a
d
ded multi
p
le level d
o
w
nsamp
l
i
n
g for ColorProcessor
commit
|
commitdiff
|
tree
2014-12-17
S
t
ephan Saalfeld
bump t
o
next
develop
m
ent cycle
commit
|
commitdiff
|
tree
2014-12-17
S
tephan S
a
alfeld
s
e
cond
t
ry t
o
ma
k
e
reproduci
b
le bu
i
ld po
m
-trakem2
-
1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-17
Stephan Sa
a
lfeld
Mer
g
e br
a
nch 'intensity-tr
a
nsform'
commit
|
commitdiff
|
tree
2014-12-13
S
tephan Saalf
e
ld
bump to next development cycle
commit
|
commitdiff
|
tree
2014-12-13
S
t
epha
n
Saalfeld
r
e
producible b
u
ild pom
-
trakem
2
-1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-12
Step
h
an Saalf
e
ld
Merge remote-tracking branc
h
'o
r
igi
n
/mas
t
er'
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalf
e
l
d
bump
t
o new deve
l
o
p
ment cycle
commit
|
commitdiff
|
tree
2014-12-12
Stepha
n
Saalfeld
reproducible
b
uild pom-trakem
2
-1
.
1
.
0
commit
|
commitdiff
|
tree
2014-12-12
S
tephan Saalf
e
l
d
Merg
e
br
a
n
c
h 'master' of
github
.
com:trake
m
2/TrakE
M
2
commit
|
commitdiff
|
tree
2014-12-12
S
t
ephan Saalfeld
a
dded Val
u
e
T
oNoi
s
e filter which fills a given intensity
.
.
.
commit
|
commitdiff
|
tree
2014-11-12
Stephan
S
aalfeld
Update R
E
ADM
E
commit
|
commitdiff
|
tree
2014-11-12
St
e
phan S
a
alfeld
U
pdate README
commit
|
commitdiff
|
tree
2014-11-07
Stephan Saalfeld
Merge branch '
m
aster' int
o
coord
X
fmF
i
x
commit
|
commitdiff
|
tree
2014-11-07
S
t
epha
n
Saa
l
fe
l
d
Merg
e
r
e
mote-
t
r
a
cki
n
g branch 'o
r
igin/inten
s
it
y
-tr
a
nsform'
commit
|
commitdiff
|
tree
2014-10-04
S
tephan Saalfeld
added R
o
bustN
o
rm
a
li
z
edL
o
calCo
n
trast
F
i
lter, fast and
.
.
.
commit
|
commitdiff
|
tree
2014-10-04
S
tephan Saalfeld
Changed defau
l
t block radius in Nor
m
al
i
z
e
LocalContrast
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saa
l
feld
auto-removed
som
e
tr
a
ining whitespaces
commit
|
commitdiff
|
tree
2014-10-02
S
tephan Saalfeld
added run method that does
not need a work
e
r for easier
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stepha
n
Saalfel
d
auto-removed som
e
trailing whites
p
ac
e
s
commit
|
commitdiff
|
tree
2014-10-02
Stephan Sa
a
lfeld
pa
r
allelized intersectio
n
tests for pairOverlapping
T
iles
commit
|
commitdiff
|
tree
2014-10-02
S
tep
h
an Saalfeld
aut
o
-finalize co
n
stant pr
o
p
e
r
ties and p
a
rameters
i
n
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
S
tephan Saa
l
feld
threadsafe Ut
i
l
s
.
e
n
sure(Fi
l
e)
commit
|
commitdiff
|
tree
2014-06-06
St
e
phan Saalfeld
fixed bug in generation of alphama
s
ks
commit
|
commitdiff
|
tree
2014-06-05
S
t
ephan Saalf
e
ld
externalized DistortionCorrection
.
r
u
n
to
e
n
a
b
l
e
calling
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
Stephan Saalfeld
E
clipse
a
utu-cosmetics in D
i
s
torti
o
n
C
orrection
commit
|
commitdiff
|
tree
2014-05-19
S
te
p
h
an Saal
f
eld
Merge bra
n
ch
'
master' in
t
o i
n
t
e
nsity
-
transform
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saalfeld
use st
a
nda
r
d writer f
o
r coordinat
e
transf
o
rms
commit
|
commitdiff
|
tree
2014-05-19
Step
h
an Saalfeld
dep
e
nd on jav
a
x
.
med
i
a
fo
r
jai
commit
|
commitdiff
|
tree
2014-05-19
Stephan S
a
alfeld
a
d
ded m
e
t
h
ods for do
w
n
sampling mor
e
than one level
commit
|
commitdiff
|
tree
2013-10-10
Stepha
n
S
a
alfeld
replaced plugins
.
config w
i
th the
Fiji version
commit
|
commitdiff
|
tree
2013-09-20
St
e
phan Saa
l
feld
Merge branch 'm
a
s
ter
'
of ssh:/
/
r
e
po
.
or
.
cz/
s
rv/git
/
trakem2
commit
|
commitdiff
|
tree
2013-09-19
Ste
p
han
Saalfeld
M
e
rge branch 'master' of ss
h
:
/
/repo
.
or
.
cz/srv/g
i
t
/trakem
2
commit
|
commitdiff
|
tree
2013-09-19
Step
h
an Saalfel
d
Parallel
p
ai
r
O
v
erlap
p
i
ngTiles did
no
t
wor
k
a
n
d
reported
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Steph
a
n Saalfeld
Merge branch 'mast
e
r
'
of ssh://repo
.
or
.
c
z
/srv
/
g
i
t/trakem
2
commit
|
commitdiff
|
tree
2013-09-16
S
tephan Saalfe
l
d
re-
a
d
ded legacy optim
i
zer
for spring
meshe
s
, this
would
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan
S
a
alfel
d
T
2
-NIT/pom
.
xml can inherit version number from parent
commit
|
commitdiff
|
tree
2013-08-14
S
tephan Saa
l
feld
added m
i
ssing dependencies to
java3d core-utils and
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
Step
h
an Sa
a
lfeld
set
p
are
n
t pom of pom-trakem2 to
p
om-fiji
.
2
.
0
.
0-S
N
A
PSHO
T
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfel
d
M
e
rge
bra
n
ch 'spring-mesh2' of ssh://repo
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
Stepha
n
Saal
f
eld
Merge branc
h
'master' in
t
o
s
p
ri
n
g-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saa
l
fel
d
raised mpicbg
d
ependen
c
y
v
er
s
ion to 0
.
6
.
1-S
N
APSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Sa
a
lf
e
ld
rais
e
d dependency to Simple_Neurite_
T
r
ace
r
to 2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
M
e
rge br
a
nch 'maste
r
'
into spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfel
d
added
c
omments and auto
-
finalize in Distortion
C
orrecti
o
n/N
L
T
commit
|
commitdiff
|
tree
2013-08-12
Ste
p
han Sa
a
lfe
l
d
added mpicbg
.
version as maven property
,
commit
|
commitdiff
|
tree
2013-05-06
S
t
e
p
h
an Saalfeld
track move of
the img
l
ib1
d
ep
e
nden
c
y
commit
|
commitdiff
|
tree
2013-04-22
Stephan S
a
alfeld
Merge branch 'master' into spring-
m
e
sh2
commit
|
commitdiff
|
tree
2013-03-05
Stephan
S
aa
l
feld
Merge b
r
anc
h
'master' i
n
t
o spring-mesh2
commit
|
commitdiff
|
tree
2013-01-18
St
e
phan Saalfeld
use
a
rra
y
lis
t
where arrayli
s
ts are re
t
urned
commit
|
commitdiff
|
tree
2013-01-16
Steph
a
n Saalfeld
adj
u
st mpicbg s
p
ring
-
mesh2 which need
s
less
damping
commit
|
commitdiff
|
tree
2013-01-11
Ste
p
ha
n
Saal
f
eld
Fixed bug in Pat
c
h
.
ge
t
FullCoordinateTransform
tha
t
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saalf
e
ld
C
h
a
nged fixedPatch
e
s
/
T
iles input collection to Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan
Saa
l
fe
l
d
P
air c
o
nstructor has t
o
be
public
commit
|
commitdiff
|
tree
2013-01-10
St
e
phan
S
a
alfel
d
fo
r
got t
o
set
isAli
g
ned flag in elastic layer alignme
n
t
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
S
t
ephan Saalfeld
e
l
astic mo
n
tage param
m
ust be
pub
l
i
c
commit
|
commitdiff
|
tree
2013-01-07
Step
h
an Saa
l
feld
added Patch
.
getFullC
o
rd
i
n
ateTra
n
s
form(
)
which generates a
commit
|
commitdiff
|
tree
2013-01-07
S
tephan Saal
f
eld
*
removed
isAligned from A
b
stra
c
t Param class
commit
|
commitdiff
|
tree
2013-01-05
Stephan
S
aalfeld
8
77: it is
legal fo
r
layerThing to be null
commit
|
commitdiff
|
tree
2012-12-21
Stephan
Saalfel
d
Corrected several long-standing issues w
i
t
h SIFT-
l
inear and
commit
|
commitdiff
|
tree
2012-12-19
Steph
a
n
Saal
f
eld
Regularized
L
a
yerAlignme
n
t got more flexible A
P
I methods and
commit
|
commitdiff
|
tree
2012-12-19
Stephan Sa
a
lfeld
c
l
e
aring cache in lay
e
r alignmen
t
m
u
st b
e
d
e
fault
t
rue
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
print optimize
r
results and do not p
r
int "ma
t
ching
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Stephan
S
aalfeld
do not
r
e
m
o
ve empty layers
in layer align
m
ent
commit
|
commitdiff
|
tree
2012-11-07
Ste
p
han Saalf
e
ld
fixed versi
o
n number of mpicbg d
e
pendency
commit
|
commitdiff
|
tree
2012-11-07
S
tephan Saalfeld
fixed merg
e
e
r
r
o
r: moved Robust
N
o
r
malizeLocalContr
a
st
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
Steph
a
n
Sa
a
lfeld
multi-threaded Rob
u
stNormalizeLocalContrast main body
commit
|
commitdiff
|
tree
2012-09-01
Stephan
Saalfeld
Removed DisplayCa
n
vas
.
setD
r
a
w
in
g
Color(int,int,boolean
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Ste
p
han Saalfeld
M
erge branch
'
m
a
ster' of ssh://repo
.
or
.
cz/
s
r
v/g
i
t/trakem
2
commit
|
commitdiff
|
tree
2012-08-31
Step
h
an Saal
f
eld
adde
d
e
x
perimental lo
c
a
l
c
o
n
tras
t
enh
a
n
cer
R
obustNormalizeLo
.
.
.
commit
|
commitdiff
|
tree
next