repo.or.cz
/
trakem2.git
/
search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
first
·
prev
·
next
use standard writer for coordinatetransforms
2014-05-19
Step
h
an Saalfeld
use standa
r
d
w
riter for coordinatetransfor
m
s
commit
|
commitdiff
|
tree
2013-10-10
Stephan Saal
f
eld
replaced plugins
.
confi
g
with the Fij
i
ver
s
ion
commit
|
commitdiff
|
tree
2013-09-20
Stephan
S
a
a
l
feld
Merge branch 'master' of ssh://r
e
po
.
or
.
cz/srv/git
/
trakem2
commit
|
commitdiff
|
tree
2013-09-19
S
t
eph
a
n Saalfeld
Merg
e
branch 'maste
r
'
o
f
s
sh:/
/
r
epo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2013-09-19
S
t
ephan Saalfeld
Par
a
lle
l
pairOverlappingTi
l
es
d
i
d
not
work and re
p
or
t
ed
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan Sa
a
lfeld
Me
r
g
e br
a
nch 'master' of
ssh://repo
.
or
.
cz/srv/
g
i
t/tr
a
kem2
commit
|
commitdiff
|
tree
2013-09-16
Stepha
n
Saalfeld
re-added legacy op
t
imizer for sp
r
i
n
g meshes, thi
s
wou
l
d
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
S
te
p
han Saalf
e
ld
T
2-NIT/pom
.
x
ml can inhe
r
it versi
o
n
n
u
m
ber from parent
commit
|
commitdiff
|
tree
2013-08-14
St
e
p
h
a
n S
a
alfeld
added
m
issing dependencies to ja
v
a
3
d
c
o
r
e-ut
i
ls and
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
S
t
ephan
S
aalf
e
ld
s
et
p
arent pom of po
m
-
trakem2 to po
m
-fiji
.
2
.
0
.
0-SN
A
PSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
Merge b
r
anch
'
spring-
m
esh2' of ssh://r
e
po
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
Ste
p
h
a
n Saalfeld
M
e
rge
branch 'master' into spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
S
t
ephan Saal
f
eld
raise
d
mpicbg de
p
endency version to
0
.
6
.
1-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan
S
aalfeld
rai
s
ed dep
e
n
de
n
cy to Simple_Ne
u
rit
e
_
Tracer to 2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
St
e
phan Saalfeld
Mer
g
e branch 'master'
i
nto s
p
ri
n
g-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalf
e
l
d
added comments and a
u
to-finalize in DistortionC
o
rrection/NLT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalf
e
ld
added m
p
i
cbg
.
version as maven p
r
operty,
commit
|
commitdiff
|
tree
2013-05-06
Step
h
an
Sa
a
lfeld
tr
a
ck move
o
f the img
l
i
b1 dependency
commit
|
commitdiff
|
tree
2013-04-22
Stephan
S
a
a
lfeld
Merg
e
branch 'mast
e
r
'
i
nto
s
p
ring-mesh2
commit
|
commitdiff
|
tree
2013-03-05
Stephan Saalfeld
M
e
rge branc
h
'master' int
o
s
pring-mesh2
commit
|
commitdiff
|
tree
2013-01-18
Stephan Saalfeld
use arraylist
w
here arrayl
i
st
s
are
retur
n
ed
commit
|
commitdiff
|
tree
2013-01-16
Ste
p
han Saal
f
eld
adjust mpicbg sp
r
ing-mesh2 w
h
ich needs
l
e
ss da
m
ping
commit
|
commitdiff
|
tree
2013-01-11
Step
h
an Saalfeld
Fixed bug
i
n Patch
.
g
e
t
F
ullCoord
i
nat
e
Transform
that
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saalfeld
Ch
a
ng
e
d fixedPatches/Tiles input co
l
lecti
o
n to Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saalfe
l
d
Pair constructor
h
as to b
e
p
u
bl
i
c
commit
|
commitdiff
|
tree
2013-01-10
S
tepha
n
S
aalfeld
forgot to set isAl
i
gned f
l
ag in elastic layer
al
i
g
n
ment
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
St
e
phan S
a
al
f
eld
elastic montage param
must be
publ
i
c
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saalf
e
ld
added Patch
.
g
etFullCordinat
e
Transform() w
h
ich gener
a
tes a
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saalfeld
* removed isAlig
n
ed from
A
bstra
c
t Param class
commit
|
commitdiff
|
tree
2013-01-05
Stephan Saalfeld
8
7
7:
it
i
s legal for layerThing to be null
commit
|
commitdiff
|
tree
2012-12-21
Stephan Sa
a
lfeld
Corrected several long-standing issues
with
S
I
FT
-
l
i
near
and
commit
|
commitdiff
|
tree
2012-12-19
Stephan S
a
alfeld
R
egularizedLayer
A
lignment go
t
more fle
x
ibl
e
A
PI methods
and
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saa
l
feld
cl
e
aring cache
i
n layer al
i
gnmen
t
must be default tr
u
e
commit
|
commitdiff
|
tree
2012-12-19
S
tephan Saalfeld
p
rint
optimize
r
resu
l
ts and do not
print "matching
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Steph
a
n
S
aalfeld
do not re
m
o
v
e empty l
a
yers in layer
alignme
n
t
commit
|
commitdiff
|
tree
2012-11-07
Stephan Saalfeld
fix
e
d versi
o
n number of m
p
icbg dependency
commit
|
commitdiff
|
tree
2012-11-07
St
e
p
han Saalfeld
fix
e
d merge error:
mov
e
d Robu
s
tNorm
a
lizeLo
c
alCo
n
tr
a
st
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
Stephan Saalfeld
multi-thread
e
d RobustN
o
rmalizeLoc
a
lC
o
ntrast main body
commit
|
commitdiff
|
tree
2012-09-01
Stephan S
a
alfeld
Remo
v
ed DisplayCanvas
.
s
e
tDraw
i
n
gColor(int,i
n
t,
b
oolean
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Stephan Saalf
e
ld
Merge b
r
an
c
h 'mas
t
e
r
' of ssh://repo
.
or
.
cz/srv/git/
t
rakem2
commit
|
commitdiff
|
tree
2012-08-31
Stephan Saal
f
eld
added
experim
e
n
tal loc
a
l
c
ontrast enhan
c
er Robust
N
ormal
i
zeL
o
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
Step
h
an Saa
l
feld
rem
o
v
e
d o
b
s
olete
c
h
o
i
ce
from align laye
r
s dialog
commit
|
commitdiff
|
tree
2012-06-26
S
t
ephan Saalfeld
spl
i
t elastic montage dialog for b
l
ock m
a
tching and use
commit
|
commitdiff
|
tree
2012-06-26
Stephan
S
a
alfeld
Merge branch
'
m
ast
e
r' of ssh:
/
/rep
o
.
o
r
.
cz/srv/git/
t
ra
k
em2
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfeld
use and do not ignore
a
lpha in helper method
commit
|
commitdiff
|
tree
2012-06-21
Stephan Sa
a
lfel
d
use the
n
e
w sequential dialogs i
n
"monta
g
e
"
f
o
r
a selection
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
Ste
p
han
S
aa
l
f
e
ld
Merge branch '
m
aster' of ssh://repo
.
o
r
.
cz/srv/git/trakem
2
commit
|
commitdiff
|
tree
2012-06-20
S
tephan S
a
alfeld
f
ixe
d
r
ange check in layer alignment
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saalf
e
ld
fixed condition chec
k
i
n Align Lay
e
rs for regularization
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saa
l
fel
d
Merge branch
'master' into regular
i
zed
-
a
f
f
ine
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
do not consid
e
r
disconne
c
te
d
til
e
s
commit
|
commitdiff
|
tree
2012-06-08
Step
h
an
S
aalfeld
Merge branch
'
r
e
gularized-aff
i
ne
'
of ssh://rep
o
.
or
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
S
tephan S
a
alfeld
pre-align
g
ra
p
hs
a
n
d matc
h
only o
v
erlapping tiles
commit
|
commitdiff
|
tree
2012-06-08
S
tep
h
an S
a
alf
e
ld
pre-ali
g
n gr
a
phs
a
nd
m
a
tch on
l
y overlappi
n
g
tiles
commit
|
commitdiff
|
tree
2012-06-08
Ste
p
han
S
aalf
e
ld
initia
l
ize Ti
l
e models
and
not only patches in align
G
raphs
commit
|
commitdiff
|
tree
2012-06-08
Stephan Sa
a
lfeld
changed ali
g
n
Graphs input collections f
r
o
m Set to Iterable
commit
|
commitdiff
|
tree
2012-06-08
Step
h
an Saalfeld
make sur
e
that static parameters do not override each
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan
S
aalfel
d
remove
spurious import
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfeld
worka
r
ound Oracle javac generics iss
u
e
commit
|
commitdiff
|
tree
2012-06-05
Ste
p
han Saalfeld
mult
i
-layer-mosaic uses
Param/ParamOptimize
.
setup(St
r
ing
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
S
tephan Saalfeld
m
o
ntage layers us
e
s
Par
a
mOp
t
i
m
i
ze
.
setup instead of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfeld
do not fix a random
tile if none is f
i
xed
commit
|
commitdiff
|
tree
2012-05-29
S
t
ephan Saa
l
feld
Condensed
.
mai
l
map
commit
|
commitdiff
|
tree
2012-05-29
Stephan Saalfe
l
d
Add
e
d
.
m
ailmap
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
Mer
g
e branch 'ma
s
ter' into regularized-affine
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
added *None* field
t
o
layer range
r
eference se
l
ection
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
s
plit
A
lign
.
ParamOptimize dialogs in
pieces
that fit
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
S
t
ephan Saalfeld
added
Gen
e
ricA
f
fineTil
e
2D
commit
|
commitdiff
|
tree
2012-05-21
S
tephan
Saalfeld
ge
n
erali
z
ed Abstra
c
tAffineTile2D generic parameter
commit
|
commitdiff
|
tree
2012-05-15
Stephan Saalfeld
t
ra
c
k refactoring in mpicbg
.
commit
|
commitdiff
|
tree
2012-05-09
Stephan S
a
alfeld
added regul
a
rized affi
n
e
l
ayer alignment,
commit
|
commitdiff
|
tree
2012-03-28
Stephan Saal
f
e
ld
fixed cr
e
ateIm
a
ge(): use p
r
emultiplied raster
commit
|
commitdiff
|
tree
2012-03-27
S
t
ephan Saalfel
d
do no
t
p
r
int the mipmap scale
commit
|
commitdiff
|
tree
2012-03-27
S
tephan Saalfel
d
for now, do n
o
t us
e
pre-multiplied alpha si
n
ce i
t
d
o
es
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Ste
p
h
a
n Saalf
e
ld
Fixed wro
n
g
painting of
Pa
t
c
he
s
wh
e
n using a do
w
nsampler
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
S
t
e
phan
Saalfeld
Downsampl
e
rM
i
pMaps no
w
consistently uses combined do
w
nsampli
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Step
h
an Sa
a
l
feld
fi
x
ed
D
ownsamplerMip
M
ap
s
blendi
n
g merged alpha into
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saal
f
eld
Downsam
p
ler test s
t
ill s
h
ows it being significantly
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Sa
a
lfeld
Fixed
D
ownsam
p
ler: range
c
h
e
ck in byte conversion w
a
s
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalf
e
ld
Merge br
a
nch
'integral' of ssh://rep
o
.
or
.
cz/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
Stephan Saal
f
eld
added missing
p
ackage to
Fake
f
ile
commit
|
commitdiff
|
tree
2012-03-08
Ste
p
han Saalfeld
Merge branc
h
'
master' o
f
ssh://
r
epo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-03-08
Stephan
S
aa
l
fe
l
d
fi
x
loc
a
l scale estima
t
e
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfeld
add
e
d getLocal
S
cale(x
,
y
) met
h
od t
o
Patch
commit
|
commitdiff
|
tree
2012-03-07
Steph
a
n Saalfeld
patch do
e
s not
p
rop
a
g
ate NonInv
e
r
t
ibleModelExcept
i
on
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfeld
Merge
b
ran
c
h 'ma
s
ter'
of ssh://rep
o
.
or
.
c
z
/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfeld
added methods to fetch the closest triangle of a tran
s
form
.
.
.
commit
|
commitdiff
|
tree
2012-02-27
Steph
a
n Sa
a
l
f
el
d
in the middle of
.
.
.
amend with final
co
m
mit
commit
|
commitdiff
|
tree
2012-02-27
Stephan Saalfeld
demonstrate by
t
e conversion in an extra loop
t
o be
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stephan S
a
al
f
e
l
d
Merge b
r
anc
h
'i
n
tegral' of s
s
h://repo
.
o
r
.
c
z
/s
r
v/gi
t
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stephan S
a
al
f
e
l
d
Down
s
a
m
pler finish
e
d
.
I have te
s
ted
s
everal variant
s
.
.
.
commit
|
commitdiff
|
tree
2012-02-24
Stephan Saalfeld
e
x
per
i
man
t
al commit:
commit
|
commitdiff
|
tree
2012-02-23
Ste
p
han S
a
alfeld
Merge br
a
n
ch
'
integral'
o
f ss
h
://re
p
o
.
or
.
cz/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-23
Stephan Saalfeld
Do
w
nsamp
l
er with al
p
ha-cha
n
nels renderi
n
g
in
t
o
byte
.
.
.
commit
|
commitdiff
|
tree
2012-02-22
Stephan S
a
alf
e
ld
M
erge branch 'mas
t
er'
o
f ssh:/
/
repo
.
or
.
cz/srv
/
git/trak
e
m
2
commit
|
commitdiff
|
tree
2012-02-22
Stephan Sa
a
lfeld
se
t
interpolation
mode to a
c
tually i
n
terpolate masks
commit
|
commitdiff
|
tree
2011-10-01
Ste
p
han
S
aalfeld
make IJ
.
lo
g
t
o
Utils
.
log in Elast
i
cLayerAlig
n
ment
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saalfeld
use MovingL
e
astS
q
ua
r
esTransform2 in E
l
asticLayerAlig
n
ment
commit
|
commitdiff
|
tree
2011-08-10
Stephan
S
aalfel
d
use MovingLeastS
q
uaresTransform2 in ElasticMontage
commit
|
commitdiff
|
tree
2011-08-10
Stephan Saalfeld
u
s
e
MovingLeastSquares
T
ransform2 for
w
arpi
n
g in multi
.
.
.
commit
|
commitdiff
|
tree
next