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use standard writer for coordinatetransforms
2014-05-19
Stephan Saal
f
eld
use standar
d
wri
t
er for co
o
rdi
n
atetransforms
commit
|
commitdiff
|
tree
2013-10-10
S
tephan Saa
l
fe
l
d
replaced plugins
.
co
n
fig
w
ith th
e
Fiji
versi
o
n
commit
|
commitdiff
|
tree
2013-09-20
Stephan S
a
alfeld
Merge branch 'm
a
ster'
of ssh:/
/
repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Stephan Saalfeld
Merge branch
'
master' of
s
sh:
/
/repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Stepha
n
Saa
l
feld
Parallel pa
i
rOverlapping
T
iles did no
t
wor
k
an
d
reported
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Step
h
an Saa
l
f
e
ld
Merge b
r
anch
'
maste
r
'
o
f ss
h
://repo
.
o
r
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2013-09-16
Ste
p
han S
a
alfeld
re-
a
dded legacy opti
m
izer fo
r
spring m
e
she
s
, this
would
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan S
a
alfeld
T2-NIT/pom
.
xml can inheri
t
version number from parent
commit
|
commitdiff
|
tree
2013-08-14
Stepha
n
Saalfeld
added
m
i
ss
i
ng
d
epe
n
dencies to
j
av
a
3d cor
e
-utils an
d
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
Stephan
S
a
a
lfeld
set parent pom of pom-trakem2 to pom-f
i
j
i
.
2
.
0
.
0-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
Merge branc
h
'spring-mesh
2
' of ss
h
://repo
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
Merge b
r
anch
'm
a
ste
r
' into spri
n
g-me
s
h2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
ra
i
sed mp
i
cbg depe
n
denc
y
versio
n
to 0
.
6
.
1-SN
A
P
SHOT
commit
|
commitdiff
|
tree
2013-08-12
S
tephan Saa
l
f
eld
raised depen
d
ency to
S
i
mple_Neu
r
ite_Tra
c
e
r
to 2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
St
e
phan Saalfe
l
d
Merge b
r
a
nch 'master
'
i
n
to spri
n
g-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
added comments and auto-finali
z
e in DistortionCorrection/NLT
commit
|
commitdiff
|
tree
2013-08-12
St
e
p
han Saalfeld
a
d
ded mp
i
cbg
.
version
as maven
property,
commit
|
commitdiff
|
tree
2013-05-06
Stephan Saalfeld
track move of the
i
mgl
i
b1 dep
e
nd
e
n
c
y
commit
|
commitdiff
|
tree
2013-04-22
S
t
ephan Saalfeld
M
erge branch 'master' into spring-
m
e
sh2
commit
|
commitdiff
|
tree
2013-03-05
St
e
phan
Saal
f
eld
M
e
rge
b
ra
n
c
h 'master' into
s
pri
n
g-m
e
sh2
commit
|
commitdiff
|
tree
2013-01-18
Steph
a
n Saa
l
feld
use arraylist where arr
a
yl
i
s
t
s are returned
commit
|
commitdiff
|
tree
2013-01-16
Step
h
an Saalfeld
adju
s
t mpicbg
s
p
ring-me
s
h2
w
hich needs less damping
commit
|
commitdiff
|
tree
2013-01-11
S
t
ephan Saa
l
feld
Fixed bug
in Pa
t
c
h
.
getFullCoordinateTransfo
r
m tha
t
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Ste
p
han Saa
l
feld
Chang
e
d fix
e
dPat
c
he
s
/Tiles input co
l
lection to
S
et
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stepha
n
Saalfeld
Pair constructor has to be pu
b
lic
commit
|
commitdiff
|
tree
2013-01-10
Step
h
an Saalfeld
forgot to set is
A
ligned flag in elastic layer
ali
g
nment
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Stephan Saalfeld
e
lastic montage
param must b
e
p
ublic
commit
|
commitdiff
|
tree
2013-01-07
S
t
eph
a
n Saalfeld
added Patch
.
getFullCordinateTransform() w
h
i
ch
g
enerates a
commit
|
commitdiff
|
tree
2013-01-07
Stephan Sa
a
l
fe
l
d
*
r
emoved i
s
Aligned fro
m
Abstract
Param class
commit
|
commitdiff
|
tree
2013-01-05
S
t
ephan
S
aalfe
l
d
8
7
7
: it i
s
legal
for
l
ayerThing
to
be
nul
l
commit
|
commitdiff
|
tree
2012-12-21
Ste
p
han Saalfeld
Corre
c
ted several l
o
ng-
s
t
and
i
ng issues with
S
IFT-l
i
near an
d
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
Regu
l
arizedLaye
r
Alignment go
t
more fle
x
ible
A
P
I me
t
hods and
commit
|
commitdiff
|
tree
2012-12-19
Stephan S
a
alfeld
c
l
earing cach
e
i
n
layer alignment must be defaul
t
true
commit
|
commitdiff
|
tree
2012-12-19
St
e
ph
a
n Saalfeld
pr
i
nt o
p
timizer results and do
not print "m
a
tchin
g
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
do not rem
o
ve empty l
a
yers
in layer alignment
commit
|
commitdiff
|
tree
2012-11-07
S
t
e
phan Saalfeld
fixed
v
ersion
n
u
m
b
e
r
o
f
mpicbg depend
e
ncy
commit
|
commitdiff
|
tree
2012-11-07
Stephan Saalfeld
fixed merge error: mov
e
d RobustNormali
z
eLoc
a
l
C
ontrast
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
Stephan
S
a
alfeld
mul
t
i-
t
hread
e
d RobustNormalizeL
o
ca
l
Contrast main bo
d
y
commit
|
commitdiff
|
tree
2012-09-01
S
tephan Saa
l
fel
d
R
e
move
d
DisplayCanvas
.
se
t
DrawingColor(int,int
,
bo
o
l
ean
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Step
h
a
n
Saal
f
eld
M
erg
e
branch 'master' of ssh
:
//
r
e
po
.
or
.
cz/srv/git/t
r
akem2
commit
|
commitdiff
|
tree
2012-08-31
Stephan S
a
alfeld
added experiment
a
l local co
n
trast enh
a
n
ce
r
RobustN
o
rm
a
lize
L
o
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
Stephan
S
a
alf
e
ld
removed obsol
e
te choice from align
l
aye
r
s
dialog
commit
|
commitdiff
|
tree
2012-06-26
Stepha
n
Saalfeld
sp
l
it el
a
stic mon
t
age dialog
for block matching and u
s
e
commit
|
commitdiff
|
tree
2012-06-26
S
t
e
p
han Saalfel
d
Merge branch
'm
a
s
t
er' of ssh://repo
.
or
.
cz/
s
rv/git/trake
m
2
commit
|
commitdiff
|
tree
2012-06-26
Ste
p
han S
a
al
f
eld
use and do not ignore
al
p
ha in helper method
commit
|
commitdiff
|
tree
2012-06-21
Step
h
an
S
aalfeld
u
s
e the
new sequential dialogs in "montage" for a selection
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
Stephan
Saalf
e
ld
Merge branc
h
'master' of
ssh://repo
.
or
.
cz/srv/git
/
trakem2
commit
|
commitdiff
|
tree
2012-06-20
Stephan S
a
alfel
d
f
i
x
e
d range check in
l
a
yer alig
n
me
n
t
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saa
l
f
eld
fixed cond
i
tion check in A
l
ign Layers for regularizati
o
n
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
Stepha
n
Saalfeld
Mer
g
e
branch 'master'
i
nto regularized
-
affine
commit
|
commitdiff
|
tree
2012-06-08
S
tephan Saalfeld
d
o
n
ot co
n
side
r
disconne
c
ted tiles
commit
|
commitdiff
|
tree
2012-06-08
S
t
ephan Saalfeld
Merge branch '
r
egularized-affine' of ssh://repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saal
f
eld
pre-align graphs and
match only o
v
erl
a
ppi
n
g tiles
commit
|
commitdiff
|
tree
2012-06-08
Stepha
n
S
a
alfeld
pre-align gr
a
phs and mat
c
h only
o
verl
a
pp
i
ng tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
i
n
itialize Ti
l
e models and
not only patches in ali
g
nGr
a
phs
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
changed
alignGraphs inp
u
t
c
ol
l
ections from Set to Iterabl
e
commit
|
commitdiff
|
tree
2012-06-08
Stephan S
a
alfeld
make s
u
r
e that stati
c
parameters
do not override
e
ach
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Ste
p
han Saalfeld
remove s
p
urious im
p
o
rt
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfeld
w
orkaround Ora
c
l
e
javac
generics issue
commit
|
commitdiff
|
tree
2012-06-05
Stephan S
a
alfeld
m
u
lti-layer
-
mosaic uses P
a
ra
m
/Par
a
mOpt
i
miz
e
.
setup(String
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
S
t
e
p
h
a
n Saalfeld
montage layer
s
uses ParamOpt
i
mize
.
setup
i
n
stead of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfeld
do no
t
fix a random tile if n
o
ne is
fixed
commit
|
commitdiff
|
tree
2012-05-29
Stephan
Saalfe
l
d
Conde
n
se
d
.
m
a
i
l
map
commit
|
commitdiff
|
tree
2012-05-29
Stephan
S
aalfeld
Add
e
d
.
mailmap
commit
|
commitdiff
|
tree
2012-05-21
Step
h
an Sa
a
l
feld
Merge
b
ranch 'master' into regularized-affi
n
e
commit
|
commitdiff
|
tree
2012-05-21
Stepha
n
Saalfeld
added
*
None*
f
i
eld to
l
ayer range referenc
e
sel
e
ction
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfe
l
d
split Align
.
ParamOptim
i
ze d
i
alogs in pieces that
f
it
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
added Gener
i
cAffineTile2D
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saal
f
eld
g
e
neralized AbstractAffineTile
2
D
gene
r
ic para
m
eter
commit
|
commitdiff
|
tree
2012-05-15
Steph
a
n Saa
l
feld
track ref
a
ctoring in mpicb
g
.
commit
|
commitdiff
|
tree
2012-05-09
Stephan Saalfeld
adde
d
regularized affine layer a
l
ignmen
t
,
commit
|
commitdiff
|
tree
2012-03-28
Steph
a
n
Saalfel
d
fixed c
r
eateImag
e
(
): use premultiplied raster
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saa
l
feld
do not print the mipmap scale
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
for now, do not use pre
-
mult
i
plied alpha s
i
nce it
d
oes
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stepha
n
Sa
a
l
fel
d
Fixed
w
r
ong pa
i
nting of Patches when using a downsampler
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
St
e
phan Saalfeld
Downsamp
l
erMipMaps
now co
n
sistently uses
comb
i
ned d
o
w
n
s
a
mpl
i
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Steph
a
n
Saalfel
d
fixed Do
w
nsamp
l
e
r
M
ipMaps bl
e
nding merge
d
alpha into
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
St
e
phan Saalf
e
ld
Down
s
ampler
test still shows it being significantly
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan
S
aalfeld
F
ixed Dow
n
sampl
e
r: range check in b
y
te c
o
nversion was
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Step
h
an
Saalf
e
ld
Merge branc
h
'
i
ntegral' of ssh://repo
.
or
.
cz/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
Stephan Saalfeld
a
d
ded missing pack
a
ge
t
o Fakefile
commit
|
commitdiff
|
tree
2012-03-08
Stephan Saal
f
eld
Merge branch
'master
'
of ssh://repo
.
o
r
.
cz/srv/git/
t
r
akem2
commit
|
commitdiff
|
tree
2012-03-08
Stephan
S
aalfeld
f
ix local scale estimate
commit
|
commitdiff
|
tree
2012-03-07
S
t
e
phan S
a
alfeld
adde
d
g
e
tLocalScale(
x
,y) method to Patc
h
commit
|
commitdiff
|
tree
2012-03-07
St
e
phan Saalfeld
pat
c
h
does not propagate NonInv
e
rtibleModelException
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
Step
h
an Saal
f
eld
M
e
r
ge
b
r
a
nch 'ma
s
ter' o
f
s
s
h://repo
.
or
.
cz/srv/
g
it/trakem2
commit
|
commitdiff
|
tree
2012-03-07
Stephan
S
a
a
lfeld
added m
e
th
o
ds to fetch
t
he c
l
o
se
s
t triang
l
e of a transform
.
.
.
commit
|
commitdiff
|
tree
2012-02-27
Stephan Sa
a
lfeld
i
n
the mid
d
le of
.
.
.
a
mend
wit
h
final commi
t
commit
|
commitdiff
|
tree
2012-02-27
Stephan Saa
l
f
e
ld
d
emonstrate byte conver
s
io
n
in an extra loop
t
o be
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stephan Saalfeld
Merge b
r
anch 'integral
'
of
s
sh:/
/
repo
.
or
.
c
z/srv
/
g
i
t
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stephan
S
aa
l
f
e
ld
D
o
wnsampler finished
.
I have
t
ested sever
a
l varia
n
t
s
.
.
.
commit
|
commitdiff
|
tree
2012-02-24
Stephan Saa
l
feld
expe
r
iman
t
a
l commit:
commit
|
commitdiff
|
tree
2012-02-23
Steph
a
n Saalfel
d
M
e
rg
e
b
r
anch 'integral' of ssh://repo
.
or
.
cz
/
srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-23
Stephan Saalfeld
Downsampler
with
alpha-channels renderi
n
g
into byte
.
.
.
commit
|
commitdiff
|
tree
2012-02-22
S
teph
a
n
S
aalf
e
ld
Merge branch 'master' of ssh://repo
.
or
.
cz
/
srv/g
i
t/t
r
akem2
commit
|
commitdiff
|
tree
2012-02-22
Stephan Saalf
e
ld
s
e
t
i
nt
e
r
p
olation mode to actua
l
ly
i
n
t
e
r
polate masks
commit
|
commitdiff
|
tree
2011-10-01
Stephan Saalf
e
ld
make IJ
.
log to Ut
i
l
s
.
l
og in
E
lasticLayerAlignme
n
t
commit
|
commitdiff
|
tree
2011-08-10
S
t
e
phan Saalfe
l
d
use Mo
v
ingLeast
S
quaresTrans
f
orm2
in E
l
asticLa
y
erAlignment
commit
|
commitdiff
|
tree
2011-08-10
Stephan
S
aalfeld
use MovingLea
s
t
Squa
r
esTra
n
sform2 in Elasti
c
Montage
commit
|
commitdiff
|
tree
2011-08-10
Steph
a
n
Saalfeld
use MovingLeast
S
quar
e
sTransform2 for
war
p
ing in mult
i
.
.
.
commit
|
commitdiff
|
tree
next