repo.or.cz
/
trakem2.git
/
search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
first
·
prev
·
next
use standard writer for coordinatetransforms
2014-05-19
Stephan Saalfeld
use
s
tan
d
ar
d
w
riter for coor
d
inatetr
a
ns
f
orms
commit
|
commitdiff
|
tree
2013-10-10
Steph
a
n
S
aalfeld
r
epla
c
ed plugins
.
config with
t
h
e
F
i
j
i
version
commit
|
commitdiff
|
tree
2013-09-20
Stephan Saalfeld
Merge branch
'
master'
of
s
sh:
/
/re
p
o
.
o
r
.
cz/srv/gi
t
/t
r
ak
e
m2
commit
|
commitdiff
|
tree
2013-09-19
Stephan
Saalfel
d
Merge branch 'master' of ssh://repo
.
or
.
cz
/
srv/git/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Stepha
n
S
aa
l
f
eld
P
a
rallel
p
airOve
r
lappingTile
s
did not w
o
rk and reported
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
S
t
ephan Sa
a
lfeld
Mer
g
e
branch 'master' of ssh:/
/
repo
.
o
r
.
cz/
s
rv/git/tra
k
e
m2
commit
|
commitdiff
|
tree
2013-09-16
S
t
ephan Saalfeld
r
e
-added legacy optimize
r
f
or spring meshes,
t
his would
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saalfeld
T2-NIT
/
pom
.
xml can inherit versio
n
number from pare
n
t
commit
|
commitdiff
|
tree
2013-08-14
Stephan
Saalfeld
added missing dependencies
t
o j
a
va3d core-utils
a
nd
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
St
e
phan Saalfe
l
d
set parent pom of po
m
-trakem2 to pom-fiji
.
2
.
0
.
0-S
N
APSHOT
commit
|
commitdiff
|
tree
2013-08-12
St
e
phan
Saa
l
feld
Mer
g
e
branch 'spring-mesh2' of ssh://repo
.
or
.
cz/
s
rv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
Stephan S
a
a
l
feld
Merge branch 'mas
t
er' into spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
raised mpicbg d
e
pendency vers
i
on to 0
.
6
.
1-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
S
tephan Saalf
e
ld
raised dependency to S
i
m
ple_Neurite_Tra
c
er to 2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
Ste
p
han Sa
a
lfeld
Merge
b
ranch 'master
'
int
o
spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Step
h
an Saal
f
e
ld
added
c
o
mment
s
an
d
aut
o
-
finalize in Distortio
n
Correction
/
N
L
T
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
a
d
d
ed mpicbg
.
version as maven property,
commit
|
commitdiff
|
tree
2013-05-06
Stephan
S
a
a
l
feld
track move of the img
l
ib1 dependency
commit
|
commitdiff
|
tree
2013-04-22
Ste
p
han Saalf
e
l
d
Merge branch
'maste
r
' into spr
i
ng-
m
esh2
commit
|
commitdiff
|
tree
2013-03-05
Stephan Saa
l
f
eld
Mer
g
e branch 'ma
s
ter'
in
t
o spring-mesh2
commit
|
commitdiff
|
tree
2013-01-18
Stephan Saalfel
d
us
e
arraylist w
h
e
r
e arr
a
ylists are
r
eturned
commit
|
commitdiff
|
tree
2013-01-16
Ste
p
han Saalfeld
adjust
m
picbg
spring-
m
esh2
w
hich
n
eeds less damping
commit
|
commitdiff
|
tree
2013-01-11
St
e
phan Saa
l
fe
l
d
Fixed
b
ug in
Patc
h
.
getFullC
o
ordinate
T
ransform that
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saalfeld
C
h
anged fixe
d
Patche
s
/
T
iles input collection
t
o Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
St
e
phan Saa
l
feld
Pa
i
r constructor h
a
s to b
e
p
ublic
commit
|
commitdiff
|
tree
2013-01-10
Steph
a
n S
a
alfeld
fo
r
got
t
o set isAligned flag
i
n elasti
c
layer alignment
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Stephan Saalfel
d
elast
i
c montage param must be publi
c
commit
|
commitdiff
|
tree
2013-01-07
Ste
p
han Saal
f
eld
adde
d
Patc
h
.
getFullCordina
t
eTransform() which
generat
e
s a
commit
|
commitdiff
|
tree
2013-01-07
St
e
phan Saal
f
eld
*
removed isAligne
d
from Abstract
P
ar
a
m
class
commit
|
commitdiff
|
tree
2013-01-05
Stephan Saalfeld
877: it i
s
leg
a
l for layerThi
n
g to b
e
null
commit
|
commitdiff
|
tree
2012-12-21
Stephan Saalfeld
Cor
r
e
cted several long-standing issues with
SIFT-linear a
n
d
commit
|
commitdiff
|
tree
2012-12-19
Stephan
S
a
a
l
feld
RegularizedLay
e
rAlignment got more flexible
API met
h
ods
a
n
d
commit
|
commitdiff
|
tree
2012-12-19
S
t
ephan Saalfe
l
d
clearing
cache in layer alignment
must be default true
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
p
r
int opt
i
mi
z
er resul
t
s and d
o
not pr
i
nt "matching
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
S
t
ephan
Saalfe
l
d
do not
remove
e
m
pty layers in lay
e
r alignme
n
t
commit
|
commitdiff
|
tree
2012-11-07
Steph
a
n Saalfeld
fixed version nu
m
ber of mpicbg depende
n
cy
commit
|
commitdiff
|
tree
2012-11-07
Stephan Saalfeld
fixed
m
e
rge error: moved Rob
u
stNo
r
malizeLo
c
alCo
n
tr
a
st
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
S
t
eph
a
n Sa
a
lfeld
multi-threaded RobustNo
r
malizeLocalContrast main body
commit
|
commitdiff
|
tree
2012-09-01
Stephan
Saalfeld
Remo
v
ed Displ
a
yC
a
nvas
.
se
t
DrawingColor(i
n
t,in
t
,b
o
o
l
ean
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Stephan Saalfe
l
d
Merge branch '
m
ast
e
r
'
o
f ss
h
://repo
.
o
r
.
cz
/
srv/git/trakem2
commit
|
commitdiff
|
tree
2012-08-31
Stephan S
a
alfel
d
added
e
xperimental
l
ocal con
t
rast enhance
r
RobustNormali
z
e
Lo
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
Stephan Saalfeld
removed
obsolete choice from
a
l
i
gn layers di
a
l
o
g
commit
|
commitdiff
|
tree
2012-06-26
St
e
phan Saalfeld
split elastic montage dialog for block m
a
tch
i
n
g
and use
commit
|
commitdiff
|
tree
2012-06-26
S
t
ephan S
a
a
l
feld
Me
r
ge branch 'master' of ssh://repo
.
or
.
cz/srv/git/tra
k
em2
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfeld
use and
d
o not
ignore al
p
ha in helper
m
ethod
commit
|
commitdiff
|
tree
2012-06-21
S
t
ep
h
an Sa
a
lfe
l
d
use the new
s
e
quential dialog
s
in "monta
g
e" for a selection
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
S
t
e
phan S
a
alfeld
M
erge
branch 'master' of ssh://repo
.
or
.
cz/srv/
g
it/trakem2
commit
|
commitdiff
|
tree
2012-06-20
S
tepha
n
Saalfeld
fixed ra
n
ge ch
e
ck in l
a
yer
a
lign
m
e
nt
commit
|
commitdiff
|
tree
2012-06-14
Stephan
S
aalfeld
fi
x
ed con
d
ition check in Align Layers f
o
r regularization
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
Step
h
an Saalfeld
Merge
b
ranch 'master
'
into regular
i
zed-affine
commit
|
commitdiff
|
tree
2012-06-08
Ste
p
han Saalfeld
do not consider discon
n
e
c
t
e
d tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalf
e
ld
Merge branch
'
regulari
z
e
d
-af
f
i
ne' of
ssh://r
e
po
.
or
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
St
e
p
han
S
aalfeld
pre-align graphs and match
o
nly
o
verla
p
p
ing tiles
commit
|
commitdiff
|
tree
2012-06-08
S
t
ephan S
a
alfeld
pre-a
l
ign graphs and match only overlapping tile
s
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalf
e
ld
initialize Tile models an
d
not only patche
s
in alignGraphs
commit
|
commitdiff
|
tree
2012-06-08
Ste
p
h
a
n S
a
alfeld
changed
alignGraphs input colle
c
tions from Set to Iterable
commit
|
commitdiff
|
tree
2012-06-08
Stephan
S
aalfel
d
m
ake
sure that
s
tatic par
a
meters do not over
r
ide e
a
c
h
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalf
e
ld
r
emove spurious im
p
o
r
t
commit
|
commitdiff
|
tree
2012-06-05
St
e
phan Saalfeld
work
a
round Oracle javac generics issue
commit
|
commitdiff
|
tree
2012-06-05
S
t
ephan Saalfel
d
multi-layer-mosaic uses Pa
r
am/Param
O
ptimize
.
setup(String
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
S
t
ephan Saal
f
eld
mon
t
ag
e
la
y
e
r
s us
e
s Par
a
m
O
ptimi
z
e
.
setup
instead of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalf
e
ld
do not
f
i
x a random ti
l
e
if none is f
i
xed
commit
|
commitdiff
|
tree
2012-05-29
Stephan S
a
alfe
l
d
C
o
n
densed
.
mai
l
m
ap
commit
|
commitdiff
|
tree
2012-05-29
Ste
p
han Sa
a
lfeld
Added
.
mailma
p
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfel
d
M
erge b
r
anch 'master' into regularized-affi
n
e
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
added *N
o
n
e
* fiel
d
to
l
ayer range
reference
s
election
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
sp
l
it Align
.
ParamOp
t
i
mize dialogs in
p
ieces that fi
t
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
St
e
phan
Saalfeld
added GenericAffineTi
l
e2D
commit
|
commitdiff
|
tree
2012-05-21
Stepha
n
S
a
a
l
feld
generaliz
e
d
A
bstractAffineTile2D generic pa
r
amete
r
commit
|
commitdiff
|
tree
2012-05-15
Stephan Saalfeld
trac
k
refactoring in mpicbg
.
commit
|
commitdiff
|
tree
2012-05-09
Ste
p
han Saalfeld
added regularized affine la
y
er alignmen
t
,
commit
|
commitdiff
|
tree
2012-03-28
Steph
a
n Saalfeld
fixed c
r
eateImage(): use premultiplied raste
r
commit
|
commitdiff
|
tree
2012-03-27
S
t
eph
a
n Saalfeld
do not p
r
int the mip
m
ap s
c
a
l
e
commit
|
commitdiff
|
tree
2012-03-27
Step
h
an Saalfeld
for now, do n
o
t
use pre-mult
i
pli
e
d alpha s
i
nce it does
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
S
t
ephan
S
aalfeld
F
i
xed wrong painting
o
f Patches
w
h
e
n using a do
w
nsampler
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Steph
a
n Saalfe
l
d
Downsampler
M
ipMaps now co
n
sistently uses combined downsam
p
li
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
St
e
pha
n
Saalfel
d
f
ixe
d
Do
w
nsamplerMi
p
Maps blending merged al
p
ha into
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
St
e
pha
n
S
aalfeld
Downsampler t
e
st sti
l
l shows
it being significantly
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalf
e
ld
Fixed D
o
wn
s
ampler: range check in byte conv
e
rsion w
a
s
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
Mer
g
e br
a
n
ch
'
integral' o
f
ssh:
/
/repo
.
or
.
cz/sr
v
/git
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
Stephan Saalfeld
adde
d
missing pac
k
age to F
a
ke
f
ile
commit
|
commitdiff
|
tree
2012-03-08
Stephan Saa
l
f
eld
M
e
rge
bran
c
h 'm
a
s
t
e
r
' of ssh
:
//
r
e
p
o
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-03-08
Steph
a
n
Saalfeld
fix local
s
cale estimate
commit
|
commitdiff
|
tree
2012-03-07
Step
h
an Saal
f
eld
a
d
ded ge
t
L
o
c
a
l
Scale(x,y) method to
Patch
commit
|
commitdiff
|
tree
2012-03-07
S
tepha
n
S
aalfeld
pat
c
h does
not
p
ropagate NonI
n
vertibleM
o
delExcept
i
on
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
Stephan
S
aalfeld
Merge
bra
n
ch 'maste
r
' of s
s
h://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saa
l
fe
l
d
added
m
ethod
s
to fetch the closest
t
r
i
a
n
gl
e
of a transform
.
.
.
commit
|
commitdiff
|
tree
2012-02-27
St
e
p
han Saalf
e
l
d
i
n
the
middle o
f
.
.
.
amend
w
i
th final c
o
mmi
t
commit
|
commitdiff
|
tree
2012-02-27
Ste
p
han Sa
a
l
feld
demonstra
t
e byt
e
conve
r
s
ion in
a
n extra loop to be
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stepha
n
S
aalfeld
Me
r
ge branch 'integral' of ssh://r
e
po
.
or
.
cz/sr
v
/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
S
tephan Saalfeld
Downsampl
e
r finished
.
I
h
ave t
e
sted several variants
.
.
.
commit
|
commitdiff
|
tree
2012-02-24
S
tephan Saalfeld
experimantal co
m
mit:
commit
|
commitdiff
|
tree
2012-02-23
Stephan Sa
a
lfeld
Merge bra
n
ch 'integral' of ssh
:
/
/repo
.
or
.
cz/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-23
Stephan
S
a
al
f
eld
Downsam
p
ler with al
p
ha-chan
n
els rendering into byte
.
.
.
commit
|
commitdiff
|
tree
2012-02-22
Stephan Saal
f
eld
M
e
rge br
a
nc
h
'
mast
e
r' of ssh:
/
/repo
.
o
r
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-02-22
St
e
phan Saalfeld
set i
n
terpolation m
o
de to actually interpol
a
te ma
s
ks
commit
|
commitdiff
|
tree
2011-10-01
Stephan Saalfeld
make IJ
.
log
t
o
Utils
.
log i
n
E
lasti
c
LayerA
l
ignment
commit
|
commitdiff
|
tree
2011-08-10
Steph
a
n Saalfeld
us
e
Mov
i
ngLeastSquaresTransf
o
rm2 in ElasticLayerAli
g
nment
commit
|
commitdiff
|
tree
2011-08-10
S
tephan Saalfeld
u
se M
o
vingLea
s
tS
q
uaresTrans
f
orm2 in ElasticMontage
commit
|
commitdiff
|
tree
2011-08-10
Stephan Sa
a
lfeld
use Mov
i
ng
L
eastSquaresT
r
ansform2 for warping in mul
t
i
.
.
.
commit
|
commitdiff
|
tree
next