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use standard writer for coordinatetransforms
2014-05-19
Steph
a
n Saalfeld
use standard wri
t
e
r for coordin
a
tet
r
ansforms
commit
|
commitdiff
|
tree
2013-10-10
St
e
phan Saalf
e
l
d
r
e
placed plugi
n
s
.
conf
i
g with the Fiji
versio
n
commit
|
commitdiff
|
tree
2013-09-20
S
t
e
p
h
a
n
Saalfeld
Me
r
ge
bra
n
ch 'master' of ssh://re
p
o
.
or
.
c
z
/srv/g
i
t/trakem2
commit
|
commitdiff
|
tree
2013-09-19
Stephan S
a
alfeld
Merge branch
'
master
'
o
f
ssh://repo
.
or
.
c
z
/
s
rv/git/trakem2
commit
|
commitdiff
|
tree
2013-09-19
S
t
e
p
h
a
n Saalfel
d
Par
a
lle
l
pairOverlappingTiles d
i
d not
w
ork and reported
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Ste
p
han Saalfeld
Mer
g
e branch
'
master' of ssh://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2013-09-16
Steph
a
n
Sa
a
lfeld
r
e-adde
d
l
eg
a
cy optimiz
e
r
for
spring
me
s
hes,
t
his would
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saalfeld
T2-NIT/pom
.
xml can inher
i
t versio
n
number from par
e
nt
commit
|
commitdiff
|
tree
2013-08-14
Steph
a
n Saa
l
feld
added missi
n
g dependen
c
ies to java3d core-utils and
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
Steph
a
n Saalfeld
se
t
parent
p
om of p
o
m-trake
m
2 t
o
pom-fiji
.
2
.
0
.
0
-
SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfe
l
d
Merge branch 'spring-me
s
h2' of ssh://repo
.
or
.
cz/srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
Steph
a
n Saal
f
el
d
Merge branch 'master' into sp
r
ing-mesh2
commit
|
commitdiff
|
tree
2013-08-12
St
e
p
han Saalfeld
raised mpi
c
bg
d
ependency version
to
0
.
6
.
1-SN
A
PSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
raise
d
dependency to Simple_Neurite_Tracer t
o
2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
Ste
p
ha
n
Saa
l
fe
l
d
Merge bran
c
h
'master' in
t
o spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
S
t
e
p
han Saalfeld
adde
d
comments and auto-fin
a
l
ize in Dis
t
ortionCorrection/NL
T
commit
|
commitdiff
|
tree
2013-08-12
S
t
ephan Saalfeld
added mp
i
cbg
.
version as mave
n
property,
commit
|
commitdiff
|
tree
2013-05-06
S
te
p
h
a
n Saal
f
eld
track move o
f
the im
g
lib1 dependency
commit
|
commitdiff
|
tree
2013-04-22
Ste
p
han
S
a
alf
e
l
d
Merge bran
c
h 'master' into
s
pring-me
s
h2
commit
|
commitdiff
|
tree
2013-03-05
Stepha
n
S
aal
f
e
l
d
Merge br
a
nc
h
'
m
a
ster' into spring-mesh2
commit
|
commitdiff
|
tree
2013-01-18
S
teph
a
n Saal
f
eld
use arraylist whe
r
e arraylists are
r
eturne
d
commit
|
commitdiff
|
tree
2013-01-16
Steph
a
n
S
aalfel
d
adj
u
st mp
i
cb
g
sp
r
i
n
g-mesh
2
w
h
ich needs less
d
amping
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saalfeld
Fixe
d
bug in Patch
.
getFullCoord
i
n
ateTrans
f
o
r
m that
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Ste
p
han Saalfeld
C
hanged f
i
x
edPatches/Tiles input collection
to Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
St
e
phan
S
aalfe
l
d
Pair constructor h
a
s to be publi
c
commit
|
commitdiff
|
tree
2013-01-10
S
t
epha
n
S
aalfeld
forgot
t
o
set
isAlign
e
d flag in elastic layer
alignment
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Step
h
an Sa
a
lfeld
elast
i
c montage param mus
t
be public
commit
|
commitdiff
|
tree
2013-01-07
Ste
p
han Saalfeld
a
dde
d
Patch
.
getFu
l
lC
o
rdinateTransf
o
rm() which
generates a
commit
|
commitdiff
|
tree
2013-01-07
St
e
phan Saalfeld
* remo
v
ed is
A
ligned from Abstract Param c
l
ass
commit
|
commitdiff
|
tree
2013-01-05
Steph
a
n S
a
alfeld
87
7
: it
i
s
l
egal f
o
r layerThing to
be
nul
l
commit
|
commitdiff
|
tree
2012-12-21
Stephan Saal
f
eld
C
orrected sever
a
l long-standing issues w
i
th SIFT-linear and
commit
|
commitdiff
|
tree
2012-12-19
St
e
phan Saalfeld
Regula
r
ize
d
LayerAlignment got more flexible
A
PI me
t
hods and
commit
|
commitdiff
|
tree
2012-12-19
St
e
phan Sa
a
lfeld
clearing cach
e
in
layer
a
lignment must be default true
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
print opt
i
m
i
zer r
e
sults and do
n
o
t print
"
m
a
tching
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfel
d
do not remo
v
e empty layers i
n
laye
r
align
m
ent
commit
|
commitdiff
|
tree
2012-11-07
S
t
epha
n
Saalfeld
fi
x
ed versio
n
number of mpicbg d
e
pende
n
c
y
commit
|
commitdiff
|
tree
2012-11-07
Stephan Saalfel
d
fi
x
ed merge error:
m
ov
e
d RobustNormalizeLoc
a
lC
o
ntrast
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
Stephan S
a
alfeld
mul
t
i-thre
a
ded RobustNormalizeLo
c
alCon
t
rast main
b
od
y
commit
|
commitdiff
|
tree
2012-09-01
S
t
e
p
h
a
n
Sa
a
lfeld
Re
m
oved DisplayCanv
a
s
.
setDrawingColor(int,int,bo
o
lean
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Step
h
an Sa
a
l
fe
l
d
Merge bra
n
c
h
'm
a
ster' o
f
ssh
:
//repo
.
or
.
c
z/srv/g
i
t/trake
m
2
commit
|
commitdiff
|
tree
2012-08-31
Stephan
S
aalfe
l
d
added e
x
pe
r
im
e
n
t
al l
o
c
al contras
t
enhancer RobustNormalizeL
o
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
Stephan Saalfeld
r
emoved obsolete
c
hoice from al
i
gn
layers dialog
commit
|
commitdiff
|
tree
2012-06-26
Stephan Saalfeld
split e
l
a
s
tic monta
g
e dialog f
o
r block matching
a
nd
u
se
commit
|
commitdiff
|
tree
2012-06-26
Stephan S
a
alfe
l
d
Mer
g
e branch
'master' o
f
ssh://repo
.
or
.
cz/sr
v
/git/trakem2
commit
|
commitdiff
|
tree
2012-06-26
Stepha
n
S
a
a
l
feld
use and do not ignore
a
lpha in helper method
commit
|
commitdiff
|
tree
2012-06-21
Stephan
Saalfeld
use th
e
n
e
w sequential dialogs in "montage"
f
or a selection
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
Stephan Saalfeld
Merge branch 'maste
r
' of ssh://repo
.
o
r
.
c
z
/
s
rv/g
i
t/tr
a
kem2
commit
|
commitdiff
|
tree
2012-06-20
Stephan Saalf
e
ld
fixed
r
ange check in layer alignment
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saalfeld
fixed condition
c
h
e
c
k in
Al
i
g
n
L
ayers for
reg
u
la
r
iz
a
tion
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
S
tephan Saalfeld
Merge br
a
n
c
h 'ma
s
ter' into regularized-affine
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
do not cons
i
de
r
disconnected tiles
commit
|
commitdiff
|
tree
2012-06-08
Steph
a
n S
a
alfel
d
M
e
rge bran
c
h 'regularized-affi
n
e' of ssh://repo
.
o
r
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
S
t
ephan Saalfeld
pre-al
i
gn graphs
and match only ov
e
rlapp
i
ng tiles
commit
|
commitdiff
|
tree
2012-06-08
St
e
p
han
S
aalfeld
p
r
e-align graphs and ma
t
ch
only ov
e
rlap
p
ing tiles
commit
|
commitdiff
|
tree
2012-06-08
Stepha
n
S
a
alfeld
initi
a
liz
e
Ti
l
e
m
o
dels an
d
not onl
y
patches in
a
l
ignGraphs
commit
|
commitdiff
|
tree
2012-06-08
S
tephan Saalfeld
changed
alignGraphs input c
o
llection
s
from Set to
Itera
b
le
commit
|
commitdiff
|
tree
2012-06-08
St
e
phan S
a
alfeld
make sure t
h
at static pa
r
am
e
ters do
n
ot
o
verride e
a
ch
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Step
h
a
n Saalfeld
remove
s
purious import
commit
|
commitdiff
|
tree
2012-06-05
St
e
phan Saalfeld
w
o
rkaround Oracle jav
a
c generics issue
commit
|
commitdiff
|
tree
2012-06-05
Stephan
S
a
a
lf
e
ld
m
u
lti-layer-mos
a
ic uses
Param/Par
a
mOptimize
.
setup(
S
t
ring
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Step
h
a
n
Saalf
e
l
d
m
ontage
layers uses ParamOptimize
.
set
u
p instead of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saal
f
eld
do n
o
t fix a
r
andom t
i
le if none is fixed
commit
|
commitdiff
|
tree
2012-05-29
Stephan
Saalfe
l
d
Conde
n
s
e
d
.
ma
i
lmap
commit
|
commitdiff
|
tree
2012-05-29
St
e
p
h
an Saalfeld
A
d
ded
.
m
a
ilmap
commit
|
commitdiff
|
tree
2012-05-21
Steph
a
n Sa
a
lf
e
ld
M
e
rge branc
h
'ma
s
te
r
' into regul
a
riz
e
d-affine
commit
|
commitdiff
|
tree
2012-05-21
Stephan
Saalfeld
added *None* field
t
o layer rang
e
reference selection
commit
|
commitdiff
|
tree
2012-05-21
Ste
p
han Saalfel
d
s
p
l
it Align
.
P
a
r
amO
p
t
i
mi
z
e di
a
l
ogs
i
n
pie
c
es that fit
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saa
l
feld
added GenericAffineTile2D
commit
|
commitdiff
|
tree
2012-05-21
St
e
phan S
a
alfe
l
d
generalize
d
AbstractAffineTile2D generic
p
arameter
commit
|
commitdiff
|
tree
2012-05-15
Steph
a
n Saalfeld
track
r
efactor
i
ng in
mpicbg
.
commit
|
commitdiff
|
tree
2012-05-09
S
te
p
h
an Saalfeld
added regularized
a
ffine layer align
m
ent,
commit
|
commitdiff
|
tree
2012-03-28
S
tephan S
a
alfeld
fixed c
r
ea
t
eImage(): u
s
e pr
e
multip
l
ied ras
t
er
commit
|
commitdiff
|
tree
2012-03-27
S
t
ephan S
a
a
l
feld
d
o not print the
mipmap sc
a
le
commit
|
commitdiff
|
tree
2012-03-27
Stephan Sa
a
lfeld
for now, do n
o
t u
s
e pre-multiplied
a
lp
h
a since it d
o
es
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
S
t
ephan Saalfeld
Fixed wrong painti
n
g
o
f
Patches when using a d
o
w
nsampler
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Steph
a
n Saalfeld
DownsamplerM
i
pM
a
ps now c
o
ns
i
stently uses c
o
mb
i
ned d
o
w
n
s
ampli
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
St
e
p
h
a
n
S
aalfeld
fixed Downsa
m
plerMipMaps
blending merged alpha in
t
o
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan
Saalfel
d
Downsampler test still shows it being significant
l
y
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
Fix
e
d Down
s
ampler: range chec
k
i
n
byte conversio
n
was
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
Merge
b
ranch
'
inte
g
ral' o
f
s
s
h://r
e
p
o
.
or
.
cz/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
Stephan Saalfeld
added miss
i
ng package to Fa
k
efile
commit
|
commitdiff
|
tree
2012-03-08
Stephan Sa
a
lfeld
Merge bran
c
h 'master' of ssh://re
p
o
.
or
.
cz/
s
rv/git/trakem2
commit
|
commitdiff
|
tree
2012-03-08
Steph
a
n Saalfeld
fix local scale estim
a
te
commit
|
commitdiff
|
tree
2012-03-07
Ste
p
ha
n
S
a
al
f
eld
added ge
t
LocalScal
e
(x,y
)
m
ethod to Patch
commit
|
commitdiff
|
tree
2012-03-07
St
e
ph
a
n Sa
a
l
f
el
d
patch does not propaga
t
e NonInverti
b
leModelException
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalf
e
ld
Me
r
ge branch '
m
aster'
o
f ssh://re
p
o
.
o
r
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-03-07
Step
h
an Saalfeld
ad
d
ed metho
d
s to fetch the c
l
o
s
est tria
n
gle of
a tr
a
n
s
form
.
.
.
commit
|
commitdiff
|
tree
2012-02-27
S
tephan Sa
a
lfeld
in th
e
middle of
.
.
.
am
e
n
d
with final commi
t
commit
|
commitdiff
|
tree
2012-02-27
Ste
p
h
a
n Saalfeld
de
m
onstrate by
t
e conve
r
sion in
an extra lo
o
p to be
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stepha
n
Saal
f
eld
Merge branch 'integral' of
s
sh://repo
.
o
r
.
cz/
s
r
v/
g
it
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stephan Sa
a
l
feld
Downsamp
l
er finished
.
I
h
a
v
e
t
e
sted seve
r
al variants
.
.
.
commit
|
commitdiff
|
tree
2012-02-24
S
tephan Saalfeld
ex
p
erimantal commit:
commit
|
commitdiff
|
tree
2012-02-23
Stephan
S
aalfeld
Merge b
r
anch
'
i
n
tegral
'
of
s
sh://repo
.
or
.
cz/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-23
S
tephan
S
a
alfeld
Downs
a
m
pler with
a
lpha-chan
n
el
s
render
i
ng in
t
o
byte
.
.
.
commit
|
commitdiff
|
tree
2012-02-22
Stephan Saalfe
l
d
M
er
g
e branch 'maste
r
'
of ssh:/
/
repo
.
o
r
.
c
z/s
r
v/git/trakem2
commit
|
commitdiff
|
tree
2012-02-22
Step
h
an Sa
a
lfeld
set interp
o
lation mode to actua
l
ly i
n
t
e
rpola
t
e masks
commit
|
commitdiff
|
tree
2012-01-06
Stephan
S
aalfeld
Fixed bug 392, the property n_
m
ipmaps
_
threads must
.
.
.
commit
|
commitdiff
|
tree
2011-11-07
Stephan Saalfeld
ElasticMo
n
t
age: do
n
ot
v
i
s
ualize
commit
|
commitdiff
|
tree
2011-11-07
Stephan Saalfeld
M
e
rge branch '
m
aster
'
o
f ssh://repo
.
o
r
.
cz/srv/git/trak
e
m2
commit
|
commitdiff
|
tree
2011-11-07
Step
h
an Saalfeld
Ali
g
nTask: really sk
i
p layer
s
ann
o
tation
-
with linked
.
.
.
commit
|
commitdiff
|
tree
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