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use standard writer for coordinatetransforms
2014-05-19
Stephan Saalfe
l
d
u
s
e
s
t
a
n
dard writer fo
r
coordinatetransforms
commit
|
commitdiff
|
tree
2013-10-10
Stephan S
a
alfeld
replaced plugin
s
.
c
onfig with th
e
Fiji ve
r
sion
commit
|
commitdiff
|
tree
2013-09-20
Stephan Saalfeld
Merge
bran
c
h 'm
a
ster' of ss
h
://repo
.
or
.
cz/srv
/
g
it/tr
a
k
e
m2
commit
|
commitdiff
|
tree
2013-09-19
Steph
a
n Saalfeld
Merge br
a
nch 'master' of ssh
:
/
/re
p
o
.
or
.
cz/srv/git/t
r
akem2
commit
|
commitdiff
|
tree
2013-09-19
S
tepha
n
S
a
alfel
d
Parallel pairOve
r
lappingT
i
les did not
work
a
n
d
reported
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stepha
n
Sa
a
lfeld
Merge branch 'maste
r
' of ssh://repo
.
or
.
cz
/
s
rv/git/trak
e
m2
commit
|
commitdiff
|
tree
2013-09-16
S
tephan S
a
a
l
fe
l
d
re-
a
dded legacy
optimizer for spring meshes, this woul
d
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan Saa
l
fel
d
T2-NIT/po
m
.
xml can inherit vers
i
on number from parent
commit
|
commitdiff
|
tree
2013-08-14
Step
h
an Saalfe
l
d
add
e
d mi
s
sing dependencie
s
t
o
j
ava3d
c
o
r
e-utils and
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
S
t
e
p
han Saalfeld
set paren
t
pom
of pom-t
r
a
k
em2 to pom-
f
iji
.
2
.
0
.
0-SNAPS
H
O
T
commit
|
commitdiff
|
tree
2013-08-12
St
e
phan Saalfeld
Merge b
r
anch 'spr
i
ng
-
mesh2'
of ssh:/
/
repo
.
or
.
c
z
/
srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
S
t
e
phan Saalfeld
Merge
b
ranch
'master'
i
nto spring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
r
ais
e
d m
p
icbg dependency version to 0
.
6
.
1
-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalf
e
l
d
ra
i
sed depe
n
dency t
o
Simple
_
Neuri
t
e
_
Tracer to 2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
S
tephan Saal
f
eld
Merg
e
bra
n
ch 'master
'
into
s
pring-m
e
sh2
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalf
e
ld
added commen
t
s
a
nd auto
-
finalize in Disto
r
t
i
onCorrection/NLT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Sa
a
lfeld
added mpicb
g
.
versio
n
as m
a
ven pro
p
erty,
commit
|
commitdiff
|
tree
2013-05-06
Stephan
Saalfeld
track move of
th
e
imgli
b
1 dependenc
y
commit
|
commitdiff
|
tree
2013-04-22
Stephan S
a
alfel
d
Merge bran
c
h 'master' i
n
to
spring-mesh2
commit
|
commitdiff
|
tree
2013-03-05
Stephan S
a
alfeld
M
e
rge bran
c
h 'master' into spri
n
g-mesh2
commit
|
commitdiff
|
tree
2013-01-18
Stephan Sa
a
l
feld
u
s
e array
l
is
t
where arra
y
lis
t
s
are returned
commit
|
commitdiff
|
tree
2013-01-16
Stephan Saa
l
fe
l
d
adjust mpicb
g
spring-mesh2 which needs les
s
damping
commit
|
commitdiff
|
tree
2013-01-11
Steph
a
n Saal
f
eld
Fixed b
u
g i
n
Patch
.
getFullCoordi
n
ateTransfor
m
that
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan Sa
a
lfe
l
d
Changed fix
e
d
P
a
tc
h
e
s/Tiles input coll
e
ction
t
o
Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan Sa
a
l
f
eld
Pair constructor has
t
o
be
p
ublic
commit
|
commitdiff
|
tree
2013-01-10
Stephan Saal
f
e
l
d
forgot
t
o set is
A
lign
e
d flag in elastic l
a
yer alignment
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
S
t
ephan Saa
l
feld
elas
t
ic montage para
m
must
b
e public
commit
|
commitdiff
|
tree
2013-01-07
Step
h
an Saalfeld
added
P
atch
.
getFullCordina
t
eTransform()
which
gener
a
t
e
s a
commit
|
commitdiff
|
tree
2013-01-07
Step
h
an Saalfeld
* remove
d
isAligned
from Abstract Param class
commit
|
commitdiff
|
tree
2013-01-05
Ste
p
han Saal
f
eld
877: it
i
s legal for
l
ayerThi
n
g t
o
be null
commit
|
commitdiff
|
tree
2012-12-21
S
tep
h
an
Saalfe
l
d
C
o
rrec
t
ed severa
l
long-standing issues with SIFT
-
lin
e
ar and
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saa
l
feld
Regular
i
z
e
dLayerAlignment got m
o
re flexible API meth
o
ds and
commit
|
commitdiff
|
tree
2012-12-19
Steph
a
n Saalfeld
c
learing
cache in layer al
i
gnme
n
t must b
e
defau
l
t tru
e
commit
|
commitdiff
|
tree
2012-12-19
Step
h
an
S
aa
l
f
e
l
d
print optimizer
results and do n
o
t print "matching
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
S
tep
h
an Saalf
e
ld
do
no
t
remove
e
m
p
ty
l
ayers in layer alignment
commit
|
commitdiff
|
tree
2012-11-07
Stephan S
a
alfeld
fixed version
number of mpicbg
depen
d
ency
commit
|
commitdiff
|
tree
2012-11-07
Stephan S
a
alfeld
fixed merge
e
rror:
m
oved
R
obus
t
N
o
rmalizeLocal
C
on
t
rast
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
Steph
a
n
S
aalfeld
mu
l
ti-thread
e
d
R
obust
N
ormalizeLocalCo
n
trast main
body
commit
|
commitdiff
|
tree
2012-09-01
Stephan Saalfeld
Removed DisplayCanvas
.
setDrawingColor(
i
nt,int,boolean
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Stephan
Saalfe
l
d
Merge br
a
n
c
h 'master' of s
s
h://repo
.
or
.
cz/srv/git/tr
a
kem2
commit
|
commitdiff
|
tree
2012-08-31
Stephan Saalfeld
added
e
xperiment
a
l local contrast
enhanc
e
r Rob
u
stN
o
rmalizeL
o
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
Stephan Saal
f
e
ld
r
emoved obsolete c
h
oice f
r
om align laye
r
s dialog
commit
|
commitdiff
|
tree
2012-06-26
Ste
p
han S
a
a
lfeld
split
elast
i
c montage d
i
alo
g
for
block matching and us
e
commit
|
commitdiff
|
tree
2012-06-26
St
e
phan S
a
alfeld
Mer
g
e branc
h
'master' of ssh:
/
/rep
o
.
or
.
cz
/
s
r
v/
g
it/trakem
2
commit
|
commitdiff
|
tree
2012-06-26
Stepha
n
Sa
a
lfeld
use and do n
o
t ignore a
l
pha in helper method
commit
|
commitdiff
|
tree
2012-06-21
St
e
p
han
S
aalfeld
u
s
e the new
s
e
quenti
a
l
dialogs in
"
montage"
for
a selection
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
Stephan Saalfeld
Mer
g
e
branch
'
m
ast
e
r' of ssh://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-06-20
Stephan Saalfeld
fixed ran
g
e ch
e
c
k in layer alignment
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saalfeld
fixed condition check in Align L
a
y
e
rs for
reg
u
la
r
ization
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saa
l
feld
Merge branch 'master
'
into regularized-
a
ffine
commit
|
commitdiff
|
tree
2012-06-08
S
t
e
phan Sa
a
lf
e
ld
d
o
not
c
onsider discon
n
ected
t
il
e
s
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
Merge branch
'reg
u
larized-affine' of ssh://repo
.
or
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
pre-align graphs
and match onl
y
ov
e
r
l
apping til
e
s
commit
|
commitdiff
|
tree
2012-06-08
Step
h
an Saalf
e
ld
p
re-al
i
gn
graphs an
d
match only overlapp
i
n
g tile
s
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
initi
a
lize T
i
l
e
models
and not o
n
ly
p
atches in alig
n
G
r
a
phs
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saal
f
eld
changed alignGraphs
i
nput collections from Set
t
o Iter
a
ble
commit
|
commitdiff
|
tree
2012-06-08
S
t
eph
a
n Saal
f
eld
make sure that s
t
atic pa
r
amete
r
s
d
o not ove
r
ride each
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
S
tep
h
an
Saalfeld
remove spurious i
m
port
commit
|
commitdiff
|
tree
2012-06-05
Ste
p
han Sa
a
lfeld
w
orkaround Ora
c
l
e
jav
a
c generics issue
commit
|
commitdiff
|
tree
2012-06-05
Stephan S
a
alfeld
multi-
l
ayer-
m
osai
c
uses
P
aram/ParamOptimize
.
setup
(
String
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
St
e
p
h
an
S
aalfel
d
mon
t
age laye
r
s uses ParamOptim
i
ze
.
se
t
up instead of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan
S
a
alf
e
ld
d
o
n
o
t
fix a rando
m
tile if
none is fix
e
d
commit
|
commitdiff
|
tree
2012-05-29
Stephan Saalf
e
ld
C
o
nden
s
e
d
.
mailmap
commit
|
commitdiff
|
tree
2012-05-29
Stepha
n
Saa
l
feld
A
d
ded
.
mailmap
commit
|
commitdiff
|
tree
2012-05-21
Step
h
an Saalfeld
Merge br
a
nch 'master' into re
g
u
larized-affine
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
added *None* f
i
eld to l
a
yer
r
ange refer
e
nce selection
commit
|
commitdiff
|
tree
2012-05-21
Stepha
n
Saalfel
d
sp
l
it
Alig
n
.
Par
a
m
Optimize dial
o
gs in pieces
tha
t
fit
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saal
f
e
l
d
added Ge
n
ericAffineTile2D
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
g
e
neralized Ab
s
tra
c
tAff
i
n
eTile
2
D g
e
neric parame
t
e
r
commit
|
commitdiff
|
tree
2012-05-15
Stephan Saalfe
l
d
track refactoring in
m
p
i
c
b
g
.
commit
|
commitdiff
|
tree
2012-05-09
Stephan
S
aa
l
feld
added regulari
z
ed
affine layer
alignme
n
t
,
commit
|
commitdiff
|
tree
2012-03-28
Steph
a
n
Saalfeld
fixed createImage(): use
premultipl
i
ed
r
aster
commit
|
commitdiff
|
tree
2012-03-27
S
t
ephan Saalfel
d
do not print th
e
mip
m
a
p
scale
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfeld
f
o
r
now, do
not use pre-mu
l
tipl
i
ed alpha
s
ince it does
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan
Saalfeld
Fixed wrong painting of Patches wh
e
n using a downsam
p
le
r
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Ste
p
han Sa
a
lfel
d
Downsa
m
plerMipMaps now
c
onsistently uses combi
n
ed
d
ownsampli
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Step
h
an
Saalfe
l
d
fi
x
e
d Downsam
p
lerMi
p
M
a
p
s blending merged alpha in
t
o
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfe
l
d
Downsampler test stil
l
sho
w
s
i
t being significantly
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan
S
aalfeld
Fix
e
d
D
o
wnsa
m
pler: range c
h
eck
i
n byte conversion
w
as
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
S
tepha
n
Saalf
e
ld
M
e
r
g
e
branch 'integral' of ssh://r
e
po
.
o
r
.
cz/
s
rv/
g
it
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
St
e
phan Saalfeld
added
m
issing pack
a
ge to Fakefile
commit
|
commitdiff
|
tree
2012-03-08
Stephan Saalfeld
Mer
g
e branch 'mas
t
er' of ss
h
:
//
r
epo
.
or
.
cz/srv/gi
t
/tr
a
k
e
m
2
commit
|
commitdiff
|
tree
2012-03-08
S
teph
a
n Saalfeld
fix local scale
estimate
commit
|
commitdiff
|
tree
2012-03-07
Stepha
n
Saalfeld
add
e
d
g
et
L
oc
a
l
S
ca
l
e
(
x,y) met
h
o
d
to Patch
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfeld
patch do
e
s not
propagate
Non
I
nvertib
l
eModel
E
xception
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
Stephan
Saalfeld
Mer
g
e branch '
m
as
t
er' of
s
sh://repo
.
o
r
.
c
z
/srv
/
git/trakem2
commit
|
commitdiff
|
tree
2012-03-07
S
t
ephan Saalfeld
a
d
ded methods t
o
fetch the closest
tr
i
a
ngle of a t
r
an
s
form
.
.
.
commit
|
commitdiff
|
tree
2012-02-27
Stephan
Saalfeld
in the middle o
f
.
.
.
amend with
final commit
commit
|
commitdiff
|
tree
2012-02-27
Stephan Saal
f
eld
demon
s
tra
t
e b
y
t
e conve
r
sion in an
extra loop to
be
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stephan Saalfeld
Merge branch 'integral' of ssh
:
//rep
o
.
or
.
cz/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
Stephan Saalfeld
D
o
wnsampler
f
inished
.
I have teste
d
s
e
v
er
a
l
variants
.
.
.
commit
|
commitdiff
|
tree
2012-02-24
Step
h
an Saalfeld
experim
a
n
t
al commit:
commit
|
commitdiff
|
tree
2012-02-23
Stepha
n
Sa
a
lfeld
M
e
rge bra
n
ch
'
inte
g
r
a
l'
of ssh://repo
.
or
.
cz
/
srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-23
Stephan Saalf
e
l
d
D
o
wnsampler with alpha-channels rendering into byte
.
.
.
commit
|
commitdiff
|
tree
2012-02-22
S
tephan
S
a
a
lfeld
Merge
b
ranch 'master' of ssh://rep
o
.
or
.
c
z/srv/git/trakem
2
commit
|
commitdiff
|
tree
2012-02-22
Stephan Saalfeld
set
i
n
terpolatio
n
mode to ac
t
uall
y
interpolate masks
commit
|
commitdiff
|
tree
2012-01-06
S
tep
h
an Saalfeld
Fixed b
u
g
3
9
2
,
t
he prope
r
ty n_mipmap
s
_threads must
.
.
.
commit
|
commitdiff
|
tree
2011-11-07
Stephan Saalfel
d
ElasticMon
t
age: do not visualize
commit
|
commitdiff
|
tree
2011-11-07
Stephan Saalfeld
Merge
b
ranch
'
maste
r
' of ssh://
r
epo
.
or
.
cz/srv/g
i
t/trak
e
m2
commit
|
commitdiff
|
tree
2011-11-07
St
e
phan
S
aal
f
e
l
d
A
l
ign
T
a
s
k: really skip layers annotation-with l
i
n
k
ed
.
.
.
commit
|
commitdiff
|
tree
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