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raised mpicbg dependency version to 0.6.1-SNAPSHOT
2013-08-12
Stephan S
a
alfeld
raised mpic
b
g dependency versi
o
n to
0
.
6
.
1-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
S
t
ephan Saa
l
f
e
ld
raised dependency to Simple_Neurite_Tracer to 2
.
0
.
2
commit
|
commitdiff
|
tree
2013-05-06
Steph
a
n Saalfeld
tra
c
k move
o
f
the imglib1 depende
n
cy
commit
|
commitdiff
|
tree
2013-01-11
Step
h
a
n Saalfeld
Fixed bug in Patch
.
getF
u
llCoordinat
e
T
ransform that
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan S
a
alfe
l
d
Changed fixedP
a
tches/Tiles input collection to S
e
t
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan S
a
alfeld
Pa
i
r
constructor has to be
public
commit
|
commitdiff
|
tree
2013-01-10
Stephan Saalfel
d
forgot t
o
set isAlign
e
d flag in e
l
a
s
tic layer alignment
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Stephan Sa
a
lfeld
e
l
as
t
i
c
mont
a
ge param must be public
commit
|
commitdiff
|
tree
2013-01-07
Stephan
S
aalfeld
added P
a
tch
.
getFullCo
r
dinateT
r
an
s
form() whic
h
generates a
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saalf
e
ld
* removed isAlig
n
ed fr
o
m Ab
s
trac
t
Param
c
l
ass
commit
|
commitdiff
|
tree
2013-01-05
S
tepha
n
Saalfe
l
d
8
7
7
:
it
i
s
l
e
gal
f
or layerThing
t
o
be n
u
ll
commit
|
commitdiff
|
tree
2012-12-21
Stephan Saalfeld
Corr
e
cted sever
a
l long
-
standing issu
e
s w
i
th SI
F
T-li
n
e
ar and
commit
|
commitdiff
|
tree
2012-12-19
Stephan S
a
alfeld
RegularizedLayerAlignment got more flexib
l
e
A
PI m
e
thods
a
nd
commit
|
commitdiff
|
tree
2012-12-19
St
e
phan Sa
a
l
f
e
l
d
clearing cache in lay
e
r al
i
gnment m
u
s
t
be
d
efault true
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saa
l
feld
print optimizer results and do no
t
print "matc
h
ing
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Stepha
n
Saalfeld
do
n
ot remov
e
emp
t
y layers in layer align
m
e
n
t
commit
|
commitdiff
|
tree
2012-11-07
Stephan Saa
l
fe
l
d
fixed version number of mpic
b
g d
e
pendency
commit
|
commitdiff
|
tree
2012-11-07
Stephan Sa
a
lfeld
f
i
xed merge e
r
ror:
move
d
R
obustNormalizeLoca
l
Contr
a
st
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
Ste
p
han
Saalfeld
m
u
lti-threaded RobustNormalizeL
o
calContrast mai
n
body
commit
|
commitdiff
|
tree
2012-09-01
S
t
ephan
S
aal
f
eld
Removed
D
isplayCanvas
.
setD
r
awingColor(int,int,
b
oolean
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Stephan Saalfeld
Merge branch 'master' of s
s
h:
/
/repo
.
or
.
cz/srv/
g
it/trakem2
commit
|
commitdiff
|
tree
2012-08-31
S
t
e
phan Saalfeld
a
d
de
d
experime
n
tal local contras
t
enhance
r
RobustNorm
a
lizeLo
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
Stephan Saalfeld
remov
e
d obsolete ch
o
ice from align laye
r
s
dialog
commit
|
commitdiff
|
tree
2012-06-26
Stepha
n
Saalfeld
spl
i
t elastic m
o
ntage dia
l
o
g
for block mat
c
hing
a
nd
use
commit
|
commitdiff
|
tree
2012-06-26
St
e
phan Saalfeld
Merge bra
n
ch
'master' of ss
h
:/
/
repo
.
or
.
cz
/
s
r
v/git/trakem2
commit
|
commitdiff
|
tree
2012-06-26
S
t
ep
h
an
S
aa
l
feld
us
e
and do not ignore alpha in help
e
r
method
commit
|
commitdiff
|
tree
2012-06-21
St
e
phan Saalfeld
use the new sequen
t
ial dialogs i
n
"mont
a
g
e
"
for a selection
.
.
.
commit
|
commitdiff
|
tree
2012-06-20
Steph
a
n Saalfeld
M
erge
b
ran
c
h
'master' of ss
h
:/
/
repo
.
or
.
cz/s
r
v/git/tr
a
k
e
m2
commit
|
commitdiff
|
tree
2012-06-20
Stepha
n
Sa
a
lfeld
f
i
xed
r
ange check in lay
e
r alig
n
me
n
t
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saa
l
feld
fixed
c
ondition
ch
e
ck
in
Align Layers for re
g
ula
r
ization
.
.
.
commit
|
commitdiff
|
tree
2012-06-14
Stephan Saalfeld
Merge branch 'mast
e
r' into r
e
g
ular
i
z
e
d-affine
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
do not consider disc
o
nnected
t
ile
s
commit
|
commitdiff
|
tree
2012-06-08
S
teph
a
n Saalfeld
Merge
branch 're
g
ularized-affine' of ssh://re
p
o
.
or
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
Stephan
S
a
a
lf
e
ld
pre-a
l
ign
graph
s
and match o
n
l
y
overlapp
i
ng tiles
commit
|
commitdiff
|
tree
2012-06-08
Steph
a
n Saalfeld
pre-
a
li
g
n gr
a
ph
s
and
match on
l
y
overlap
p
ing tiles
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
init
i
a
lize Tile mode
l
s
and
not onl
y
patches in ali
g
nGraphs
commit
|
commitdiff
|
tree
2012-06-08
Step
h
an Saalf
e
ld
changed alignGraphs inpu
t
co
l
le
c
tions from
S
e
t to Iterable
commit
|
commitdiff
|
tree
2012-06-08
Stephan Saalfeld
make
sure that static param
e
ters
do not ove
r
ride
each
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
S
tephan Saalfel
d
remove spurious import
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfeld
workaround Oracle jav
a
c
generic
s
issue
commit
|
commitdiff
|
tree
2012-06-05
Stepha
n
S
aalfel
d
multi-layer-mos
a
i
c
uses Param/ParamOpti
m
ize
.
setup(String
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Ste
p
h
an Saalfeld
montage layers us
e
s ParamOptimize
.
s
e
tup in
s
tead of
.
.
.
commit
|
commitdiff
|
tree
2012-06-05
Stephan Saalfeld
do not fix
a
random tile if none is fi
x
ed
commit
|
commitdiff
|
tree
2012-05-29
Stepha
n
Saalfeld
Condensed
.
m
a
i
lmap
commit
|
commitdiff
|
tree
2012-05-29
Stephan
Saa
l
feld
Ad
d
e
d
.
mail
m
ap
commit
|
commitdiff
|
tree
2012-05-21
Stephan Sa
a
lfeld
Merge
br
a
nch 'm
a
ster' into regulariz
e
d-affine
commit
|
commitdiff
|
tree
2012-05-21
Stephan
S
aalfeld
added
*No
n
e
*
fi
e
ld to lay
e
r range r
e
f
e
rence selection
commit
|
commitdiff
|
tree
2012-05-21
Ste
p
h
a
n S
a
a
l
feld
s
p
lit Align
.
P
aramOptimize dialogs in piec
e
s tha
t
fit
.
.
.
commit
|
commitdiff
|
tree
2012-05-21
Stephan Saalfeld
add
e
d GenericAffineTile2D
commit
|
commitdiff
|
tree
2012-05-21
Stepha
n
Saa
l
feld
generalized Abst
r
a
c
tAffineTile2D generic parameter
commit
|
commitdiff
|
tree
2012-05-15
Stephan
Saalfeld
track refactorin
g
in mp
i
cbg
.
commit
|
commitdiff
|
tree
2012-05-09
Stephan Saalfeld
added regula
r
ized affine layer align
m
ent
,
commit
|
commitdiff
|
tree
2012-03-28
Stephan Saalf
e
ld
fixed crea
t
eImage(): use prem
u
ltiplie
d
raster
commit
|
commitdiff
|
tree
2012-03-27
Stephan S
a
alfeld
do not print
the mipmap sca
l
e
commit
|
commitdiff
|
tree
2012-03-27
Stepha
n
Saa
l
fe
l
d
for
now, do not use pr
e
-multiplied alpha since it does
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfe
l
d
Fixed wrong
p
a
i
nting of Patches
w
hen
using
a downsamp
l
er
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan
S
a
a
lfeld
Downs
a
mplerMipMaps no
w
co
n
sistently uses combined dow
n
s
a
mpli
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfe
l
d
fixed Downs
a
mplerMipMaps blen
d
ing
merged alpha
i
nto
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
St
e
phan
Saalfeld
D
o
w
ns
a
m
pler test
s
till sho
w
s it being signi
f
i
cantly
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
S
tephan
S
aalfeld
Fixed Downsampler: range chec
k
in byte
conver
s
i
on
w
as
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Stephan Saalfe
l
d
Merge branch 'i
n
tegral' of ssh://repo
.
or
.
cz/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
Stephan Saalfeld
added
missing pack
a
ge to Fakefile
commit
|
commitdiff
|
tree
2012-03-08
S
t
epha
n
Saalfeld
Merge
bra
n
ch
'mast
e
r'
o
f ss
h
://
r
epo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-03-08
St
e
phan Saal
f
el
d
f
ix local scale
es
t
imate
commit
|
commitdiff
|
tree
2012-03-07
Steph
a
n Saalfeld
a
dded getLocalScale(x,y) meth
o
d to Patc
h
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saalfel
d
patch
d
oes n
o
t propagate
NonInvertibleModelEx
c
e
p
tion
.
.
.
commit
|
commitdiff
|
tree
2012-03-07
Ste
p
h
a
n Saalfeld
M
erge branch 'master' of ssh://repo
.
or
.
c
z
/srv/git/
t
rakem2
commit
|
commitdiff
|
tree
2012-03-07
Stephan Saa
l
feld
ad
d
ed meth
o
ds to fetch the closest
t
ria
n
g
l
e of a tran
s
f
o
r
m
.
.
.
commit
|
commitdiff
|
tree
2012-02-27
Stephan Saalf
e
ld
in the midd
l
e
of
.
.
.
amend with f
i
nal commit
commit
|
commitdiff
|
tree
2012-02-27
Ste
p
h
a
n Saalfeld
demo
n
str
a
te byte conversion
in an extra loop to be
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
St
e
p
h
a
n
Saalfeld
Merge branch 'integ
r
a
l'
o
f
s
s
h
://repo
.
or
.
cz
/
srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
S
t
e
phan Saalfeld
Downsam
p
l
e
r
f
i
n
i
shed
.
I
have t
e
s
ted
s
e
v
eral varian
t
s
.
.
.
commit
|
commitdiff
|
tree
2012-02-24
S
t
e
p
han
Saalfeld
e
x
perim
a
ntal comm
i
t:
commit
|
commitdiff
|
tree
2012-02-23
Stepha
n
Saalfeld
Merge bran
c
h 'i
n
tegral' of ssh://repo
.
o
r
.
cz/srv/git
.
.
.
commit
|
commitdiff
|
tree
2012-02-23
Stephan Saa
l
feld
D
o
w
n
s
a
m
pler w
i
th
a
lpha-ch
a
nnels renderi
n
g into byte
.
.
.
commit
|
commitdiff
|
tree
2012-02-22
Stephan Saalfeld
Merge branch
'
m
a
s
ter
'
of
ssh://repo
.
or
.
cz/srv/git/
t
r
a
kem2
commit
|
commitdiff
|
tree
2012-02-22
Stephan Saalf
e
l
d
se
t
interpola
t
ion mode
to actu
a
lly interpol
a
te
m
asks
commit
|
commitdiff
|
tree
2012-01-06
Stephan Saalfeld
Fixe
d
bug 392
,
the property n_mipma
p
s_threads mus
t
.
.
.
commit
|
commitdiff
|
tree
2011-11-07
Stephan Saalfeld
ElasticMon
t
age: do not
v
i
suali
z
e
commit
|
commitdiff
|
tree
2011-11-07
Ste
p
h
a
n Saalfeld
Merge branch 'master' of ssh://repo
.
or
.
c
z/srv/git/trakem2
commit
|
commitdiff
|
tree
2011-11-07
Step
h
a
n
Saalfe
l
d
Al
i
gnTa
s
k: really skip layers an
n
otatio
n
-
w
i
t
h linked
.
.
.
commit
|
commitdiff
|
tree
2011-11-07
Stephan Saa
l
feld
ElasticM
o
nta
g
e: respect fixed P
a
t
ches (from selec
t
ion
.
.
.
commit
|
commitdiff
|
tree
2011-11-07
Stephan Saalfeld
re
n
amed shading local p
a
r
a
m
e
ter
commit
|
commitdiff
|
tree
2011-11-07
Stepha
n
Saalfeld
Att
e
mpt to
f
ix
b
u
g
38
0
.
Please check
i
f th
e
behavior
commit
|
commitdiff
|
tree
2011-11-07
Stephan Saalfeld
adde
d
comments and fixed typo
commit
|
commitdiff
|
tree
2011-10-22
Stephan S
a
alfeld
Ela
s
ticAlignment/Monta
g
e
:
commit
|
commitdiff
|
tree
2011-10-19
Stephan
S
aalfeld
Merge branch 'mast
e
r
'
of s
s
h://re
p
o
.
or
.
cz/srv/git/trakem
2
commit
|
commitdiff
|
tree
2011-10-12
St
e
phan S
a
alfeld
Mer
g
e branch 'master' of ssh://repo
.
or
.
cz/srv/gi
t
/trak
e
m2
commit
|
commitdiff
|
tree
2011-10-10
S
t
ephan
S
aalfeld
Merge
branch 'master' o
f
ssh://repo
.
or
.
cz
/
srv/g
i
t/trakem2
commit
|
commitdiff
|
tree
2011-10-10
Stephan Saa
l
fel
d
Align uses Utils
.
log
in
s
tead
o
f IJ
.
log
commit
|
commitdiff
|
tree
2011-10-10
Stephan Saalfeld
Distortion
c
o
r
rection use
s
U
t
ils
.
log ins
t
ead of IJ
.
lo
g
commit
|
commitdiff
|
tree
2011-10-10
Stephan Saalf
e
ld
log time and date
p
ea
r
e
ac
h
log
print
commit
|
commitdiff
|
tree
2011-10-10
St
e
phan
Saalfeld
added exp
e
r
imental 16bit unsigned tiles exporter
commit
|
commitdiff
|
tree
2011-10-10
Stephan
S
aalfel
d
Transfo
r
mMeshMappingWithMasks got methods and renderin
g
commit
|
commitdiff
|
tree
2011-10-01
Stephan
S
aalfeld
make IJ
.
l
o
g to Utils
.
log in ElasticLayerAlig
n
ment
commit
|
commitdiff
|
tree
2011-09-29
Stepha
n
Saalfeld
added b
l
oc
k
r
adius as parameter to
commit
|
commitdiff
|
tree
2011-09-28
Stephan Saa
l
f
e
l
d
ElasticLayerAlignment
v
is
u
alization
b
ack to false
commit
|
commitdiff
|
tree
2011-09-27
S
t
e
phan S
a
al
f
eld
springm
e
sh damp ba
c
k
to normal, not
m
uch
commit
|
commitdiff
|
tree
2011-09-27
Stephan Saalfeld
M
e
rg
e
b
r
anc
h
'
master' of ssh://repo
.
or
.
cz/sr
v
/git/trakem2
commit
|
commitdiff
|
tree
2011-09-27
Stephan Saal
f
e
l
d
adde
d
lo
c
al
smoothness
filter
to ela
s
t
ic layer
commit
|
commitdiff
|
tree
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