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pom-trakem2-1.4.0
2015-09-03
Stephan Sa
a
lfeld
po
m
-tr
a
kem2-1
.
4
.
0
commit
|
commitdiff
|
tree
2015-09-03
Stephan Saa
l
fel
d
added
multi-thre
a
ding
f
o
r
c
oefficien
t
s match
i
n
g
commit
|
commitdiff
|
tree
2015-09-03
Stepha
n
Saalfeld
p
ut
m
atch i
n
tensiti
e
s
command
s
into workers to
blo
c
k
.
.
.
commit
|
commitdiff
|
tree
2015-09-02
S
tephan Sa
a
lfeld
Workin
g
vers
i
on w
i
thout multi-th
r
ead
i
ng
and burea
u
c
r
ats
commit
|
commitdiff
|
tree
2015-09-02
Steph
a
n Saalfeld
included match intensi
t
ies
p
lugin, build with
S
NAP
S
H
O
TS
.
.
.
commit
|
commitdiff
|
tree
2015-08-31
Stephan Saalfeld
Merg
e
pull request #
1
1 from hans
l
o
v
sk
y
/
m
aste
r
commit
|
commitdiff
|
tree
2015-04-07
St
e
phan Saalfeld
next dev
e
lop
m
ent cycle
commit
|
commitdiff
|
tree
2015-04-07
S
t
ephan
Saalfeld
release po
m
-
t
rakem
2
-1
.
3
.
3
commit
|
commitdiff
|
tree
2015-03-26
Stephan
Saalfeld
re-
r
elease pom-t
r
akem2-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-24
St
e
phan Saalfeld
next develop
m
ent cycle
commit
|
commitdiff
|
tree
2015-03-24
Stephan Sa
a
l
f
eld
r
e-
r
elease pom-trak
e
m2-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-19
Stephan Saalfeld
ne
x
t de
v
elopment cycle (problem with
E
c
l
ipse Ke
p
le
r
.
.
.
commit
|
commitdiff
|
tree
2015-03-19
Ste
p
han Sa
a
lfeld
re
l
ease pom-t
r
ak
e
m2-1
.
3
.
2
commit
|
commitdiff
|
tree
2015-03-07
Stephan
S
a
a
l
fel
d
next
d
evelopment c
y
cle
commit
|
commitdiff
|
tree
2015-03-07
Stephan S
a
a
lf
e
ld
rele
a
s
e
commit
|
commitdiff
|
tree
2015-02-14
S
t
ephan Saalfeld
next develo
p
ment cycl
e
commit
|
commitdiff
|
tree
2015-02-14
Stephan Saa
l
feld
release
commit
|
commitdiff
|
tree
2015-02-14
S
t
ephan Saal
f
e
ld
release
commit
|
commitdiff
|
tree
2015-01-14
Steph
a
n S
a
a
l
feld
added get
t
ers
for mls2 p,
q
, and w
commit
|
commitdiff
|
tree
2015-01-12
Stephan Saalfeld
Ad
d
ed E
r
ic Tr
a
ut
m
an's c
h
e
c
k
fo
r
numb
e
r of threads to
.
.
.
commit
|
commitdiff
|
tree
2015-01-12
Stephan Saalfel
d
Fixed
Value2N
o
i
s
e
F
ilter max export
commit
|
commitdiff
|
tree
2014-12-19
Stephan
Saalfel
d
bump to next develo
p
ment cycl
e
commit
|
commitdiff
|
tree
2014-12-19
S
t
ephan Saalfeld
M
e
rge remote-tra
c
king bra
n
ch 'origin'
commit
|
commitdiff
|
tree
2014-12-19
S
t
e
p
han
S
aa
l
fe
l
d
reproducible
buil
d
p
o
m-trakem2-1
.
1
.
2
commit
|
commitdiff
|
tree
2014-12-19
Stephan
S
aa
l
feld
separate
d
Coordin
a
teTransform part
s
of
l
enscorrectio
n
.
.
.
commit
|
commitdiff
|
tree
2014-12-18
Stephan Sa
a
lfeld
ad
d
ed m
u
l
tiple level dow
n
s
ampling
f
or Col
o
rProcessor
commit
|
commitdiff
|
tree
2014-12-17
St
e
p
h
a
n Saalfeld
bump to next
d
e
velopme
n
t cycle
commit
|
commitdiff
|
tree
2014-12-17
S
t
ephan Saalfe
l
d
second t
r
y
to make reproducib
l
e
build pom-trakem2-1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-17
Ste
p
han Saalfeld
M
e
r
g
e b
r
an
c
h 'intensity
-
transfo
r
m'
commit
|
commitdiff
|
tree
2014-12-13
Stephan Saalfeld
b
ump to next development
c
ycle
commit
|
commitdiff
|
tree
2014-12-13
Stephan S
a
a
l
fel
d
reproducible bui
l
d po
m
-
t
rak
e
m2-1
.
1
.
1
commit
|
commitdiff
|
tree
2014-12-12
Ste
p
han Sa
a
lfeld
Merge remote
-
tracking branch
'
origi
n
/m
a
ster
'
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalfeld
bump to new developmen
t
cy
c
le
commit
|
commitdiff
|
tree
2014-12-12
St
e
phan Saalfeld
re
p
roduci
b
le build
p
om-trakem2-1
.
1
.
0
commit
|
commitdiff
|
tree
2014-12-12
S
t
ephan Saalfeld
Merge branch 'master' of gi
t
hub
.
com
:
tra
k
em2/TrakEM
2
commit
|
commitdiff
|
tree
2014-12-12
Stephan Saalfeld
a
d
ded
V
alueToNois
e
filter which f
i
lls
a g
i
ven int
e
nsi
t
y
.
.
.
commit
|
commitdiff
|
tree
2014-11-12
St
e
phan
S
aalfel
d
Update R
E
A
D
ME
commit
|
commitdiff
|
tree
2014-11-12
Stephan Saalf
e
ld
U
p
date README
commit
|
commitdiff
|
tree
2014-11-07
S
tep
h
a
n
Saa
l
f
eld
Merge branc
h
'ma
s
t
e
r' into coordXfmFix
commit
|
commitdiff
|
tree
2014-11-07
Step
h
a
n
S
aalfeld
Merge remote
-
track
i
ng bran
c
h '
o
rigin/intensity-tran
s
form'
commit
|
commitdiff
|
tree
2014-10-04
Stephan Saa
l
feld
a
d
ded
R
obustNormali
z
e
dLoc
a
lCon
t
rastFi
l
te
r
,
fast
a
n
d
.
.
.
commit
|
commitdiff
|
tree
2014-10-04
Stephan Saalfeld
Changed d
e
fault b
l
ock radiu
s
in Norm
a
lize
L
ocalCo
n
trast
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
S
t
e
p
h
a
n
Saalfeld
a
uto-removed some
trainin
g
wh
i
tespaces
commit
|
commitdiff
|
tree
2014-10-02
Stepha
n
Saalfeld
added
r
u
n
method
t
h
at does not nee
d
a worker for easier
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Stephan
S
aalfeld
a
uto-
r
emoved som
e
trailing whi
t
e
s
pace
s
commit
|
commitdiff
|
tree
2014-10-02
Stephan Saa
l
feld
par
a
llelized intersection tests for
pair
O
verlappi
n
gTiles
commit
|
commitdiff
|
tree
2014-10-02
S
t
ephan Saalfeld
auto-finalize constant prop
e
rties
a
nd paramete
r
s in
.
.
.
commit
|
commitdiff
|
tree
2014-10-02
Ste
p
han Saalfeld
threadsafe Utils
.
ensure(File
)
commit
|
commitdiff
|
tree
2014-06-06
S
t
eph
a
n
S
aalfeld
fixed bug i
n
g
en
e
ratio
n
of
a
lphamasks
commit
|
commitdiff
|
tree
2014-06-05
S
t
ephan Saalfeld
e
xte
r
nalized Dist
o
rtion
C
orrection
.
run to enable callin
g
.
.
.
commit
|
commitdiff
|
tree
2014-06-05
Stepha
n
S
a
alfeld
E
c
lipse autu-cosmetics in DistortionCorrec
t
io
n
commit
|
commitdiff
|
tree
2014-05-19
Stephan
S
aalf
e
l
d
Merge
branch 'mast
e
r' i
n
to int
e
nsity-tra
n
sform
commit
|
commitdiff
|
tree
2014-05-19
Stephan Saalfeld
use standard writer for c
o
ord
i
n
a
tetra
n
sforms
commit
|
commitdiff
|
tree
2014-05-19
S
t
e
p
han Saalfeld
d
e
pend o
n
javax
.
media for jai
commit
|
commitdiff
|
tree
2014-05-19
St
e
phan Saalfeld
added methods for downsampling more
t
ha
n
one leve
l
commit
|
commitdiff
|
tree
2013-10-10
Steph
a
n
Saalfeld
replaced p
l
ugins
.
c
o
nfig wi
t
h
the Fiji version
commit
|
commitdiff
|
tree
2013-09-20
S
t
e
p
han
S
aalfeld
M
e
rge branch 'master'
of ssh://repo
.
or
.
cz/srv/g
i
t/
t
r
akem2
commit
|
commitdiff
|
tree
2013-09-19
Stephan Saalfeld
Me
r
ge branch '
m
aster' of ssh:
/
/repo
.
or
.
cz/
s
rv/git/trak
e
m2
commit
|
commitdiff
|
tree
2013-09-19
Stephan Saa
l
feld
Parallel pa
i
rOv
e
rlappingTiles did
n
ot work and re
p
o
r
ted
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
S
te
p
h
a
n Saalfeld
M
erge branch 'master' of ssh://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2013-09-16
Ste
p
h
an Saalfeld
re-added legacy
opt
i
mizer for spring mesh
e
s, th
i
s would
.
.
.
commit
|
commitdiff
|
tree
2013-09-16
Stephan
S
a
a
l
feld
T
2
-
NIT/pom
.
xml
can inh
e
r
i
t version number fr
o
m parent
commit
|
commitdiff
|
tree
2013-08-14
Step
h
an Saalfeld
adde
d
m
i
s
s
ing depend
e
ncie
s
to ja
v
a3d core-utils and
.
.
.
commit
|
commitdiff
|
tree
2013-08-14
St
e
p
ha
n
Saalfeld
set parent pom of pom-trakem2 to
p
om
-
fi
j
i
.
2
.
0
.
0-SN
A
PSHOT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfe
l
d
Merge branch 'spr
i
ng-m
e
sh2'
of
s
sh://repo
.
or
.
c
z
/srv
.
.
.
commit
|
commitdiff
|
tree
2013-08-12
Step
h
an
S
aalfe
l
d
Merge
b
ranch 'master' in
t
o
spri
n
g-mesh2
commit
|
commitdiff
|
tree
2013-08-12
Ste
p
h
a
n
Saalfeld
raised mpic
b
g d
e
pendency vers
i
o
n to 0
.
6
.
1-SNAPSHOT
commit
|
commitdiff
|
tree
2013-08-12
Step
h
an S
a
alfeld
rais
e
d
depende
n
cy t
o
S
i
m
ple
_
N
e
u
r
i
te_Tracer to
2
.
0
.
2
commit
|
commitdiff
|
tree
2013-08-12
Ste
p
han S
a
alfe
l
d
Merge b
r
anch '
m
aster' into
s
pring-mesh2
commit
|
commitdiff
|
tree
2013-08-12
St
e
phan
S
a
a
l
f
e
l
d
added comments
a
nd auto-finalize in Di
s
t
o
rti
o
nC
o
r
rection/NLT
commit
|
commitdiff
|
tree
2013-08-12
Stephan Saalfeld
added mpi
c
b
g
.
version
a
s m
a
ven pro
p
e
rty,
commit
|
commitdiff
|
tree
2013-05-06
Stephan Saal
f
eld
t
rack m
o
v
e of the imgl
i
b
1 de
p
endency
commit
|
commitdiff
|
tree
2013-04-22
Stephan
Saal
f
el
d
Merge branch
'master' in
t
o spring-mesh2
commit
|
commitdiff
|
tree
2013-03-05
Stephan Saalfeld
Merge branch 'm
a
s
t
e
r' into s
p
r
ing-mesh2
commit
|
commitdiff
|
tree
2013-01-18
S
tepha
n
Saalfeld
use
a
rrayli
s
t
wh
e
re arraylists are returned
commit
|
commitdiff
|
tree
2013-01-16
Stephan Saalfeld
adjust mpicbg sp
r
ing-mesh2 w
h
ich needs less
d
ampi
n
g
commit
|
commitdiff
|
tree
2013-01-11
Stephan Saalfeld
Fixed b
u
g
in
Patch
.
getFu
l
lC
o
o
r
d
inateTra
n
sfor
m
that
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
Stephan Sa
a
lfeld
Changed
f
ixedPatches/T
i
les input
coll
e
cti
o
n
to
Set
.
.
.
commit
|
commitdiff
|
tree
2013-01-11
S
t
ephan Saalfeld
Pair
constru
c
tor has to be public
commit
|
commitdiff
|
tree
2013-01-10
St
e
p
h
a
n Saalfeld
forgot t
o
set isAligned flag in
e
lastic layer alignment
.
.
.
commit
|
commitdiff
|
tree
2013-01-09
Stephan Saa
l
feld
ela
s
t
i
c mo
n
tage param
mu
s
t be
p
ublic
commit
|
commitdiff
|
tree
2013-01-07
Stephan Saalfeld
added
Patch
.
get
F
ullCordin
a
teTransfor
m
() which gener
a
tes a
commit
|
commitdiff
|
tree
2013-01-07
Step
h
an Saalfeld
* removed isAligned
fro
m
Ab
s
t
ract Param c
l
ass
commit
|
commitdiff
|
tree
2013-01-05
Stephan Saalfeld
8
7
7: it is legal fo
r
lay
e
rTh
i
n
g
to be
n
ull
commit
|
commitdiff
|
tree
2012-12-21
Stephan
Saalf
e
ld
Corrected several long-standin
g
is
s
ues with SIF
T
-linear and
commit
|
commitdiff
|
tree
2012-12-19
Stephan Sa
a
lfeld
Regulari
z
e
d
LayerAli
g
nment got mo
r
e flexible API met
h
ods
and
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
c
learing cache
in layer alignm
e
nt m
u
st b
e
d
e
fault true
commit
|
commitdiff
|
tree
2012-12-19
St
e
phan Sa
a
l
feld
print
o
p
t
imizer
r
e
sults a
n
d
d
o no
t
p
r
int "matching
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
Stephan Saalfeld
do not remove e
m
pty layer
s
in layer alignment
commit
|
commitdiff
|
tree
2012-11-07
Step
h
an Saalfeld
fixed
version number
o
f
mpicbg depe
n
dency
commit
|
commitdiff
|
tree
2012-11-07
Stephan Saalfeld
fixed
m
e
rge
e
r
r
or: moved Ro
b
u
s
tNormalizeLocalCon
t
rast
.
.
.
commit
|
commitdiff
|
tree
2012-09-01
Stephan Saalfeld
mu
l
ti-threaded R
o
bustNo
r
ma
l
izeLocalContrast main body
commit
|
commitdiff
|
tree
2012-09-01
Stephan Saalfeld
Removed DisplayCanvas
.
s
etDrawin
g
Color(
i
n
t,
i
nt,
b
oolean
.
.
.
commit
|
commitdiff
|
tree
2012-08-31
Ste
p
han Saalfe
l
d
Merge
b
ra
n
ch
'
m
aster' of
s
sh://repo
.
or
.
cz/srv/git/trakem2
commit
|
commitdiff
|
tree
2012-08-31
Stephan Saal
f
eld
a
dded experi
m
ental local c
o
ntrast en
h
a
n
cer RobustNor
m
alize
L
o
.
.
.
commit
|
commitdiff
|
tree
2012-06-29
Stephan S
a
al
f
eld
remove
d
ob
s
olete
c
hoice
f
rom
a
li
g
n layers dialog
commit
|
commitdiff
|
tree
2012-06-26
Stephan Sa
a
lfel
d
split e
l
astic montage dialog for b
l
ock
m
atching and us
e
commit
|
commitdiff
|
tree
2012-06-26
Steph
a
n Saal
f
eld
Merge
bran
c
h
'
mas
t
er' of
s
s
h://repo
.
or
.
c
z/s
r
v/git/trakem2
commit
|
commitdiff
|
tree
2012-06-26
Steph
a
n
S
aalfeld
u
s
e and do n
o
t
ignor
e
a
l
pha in helper metho
d
commit
|
commitdiff
|
tree
2012-06-21
St
e
phan Saalf
e
ld
use the new s
e
quen
t
ial
d
ialogs in "montage" for a selection
.
.
.
commit
|
commitdiff
|
tree
next