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rangi: skip roots without nsub colors in their neighborhood
2012-10-17
Al
i
Gholami Rudi
rang
i
: skip roots without nsub
colors in their
nei
g
hborhood
commit
|
commitdiff
|
tree
2012-10-16
Al
i
Gholami Rudi
t
est: dot files are
no lo
n
ger su
p
ported
commit
|
commitdiff
|
tree
2012-10-16
Ali Gholam
i
R
u
di
bl2
e
xp
:
extract bl
a
st e
-
value
fr
o
m blastp outpu
t
commit
|
commitdiff
|
tree
2012-10-16
A
l
i Gholam
i
Ru
d
i
fastafilt: filte
r
fasta
files based on its c
o
mplexes
commit
|
commitdiff
|
tree
2012-10-16
Ali Gho
l
ami R
u
di
m
e
val: count the complexes containing a mo
t
if
commit
|
commitdiff
|
tree
2012-10-16
Ali Gholami Rudi
rang
i
: -m uses
m
atching t
o
i
dentify infeasibl
e
subgraphs
commit
|
commitdiff
|
tree
2012-10-16
Ali Gholam
i
Rudi
proc: fix nsub_detect(
)
for mult
i
ple t
h
r
eads
commit
|
commitdiff
|
tree
2012-10-16
Ali Gholami Rudi
conv:
u
s
e a hash
table for stori
n
g prote
i
n names
commit
|
commitdiff
|
tree
2012-10-16
Ali Gholami Rudi
conv: switch
i
ng to gramof
o
n
e
-
s
tyle
interaction files
commit
|
commitdiff
|
tree
2012-10-16
A
li Ghola
m
i
Rudi
conv: fix bl
a
st threshold ch
e
cking
commit
|
commitdiff
|
tree
2012-10-10
Al
i
Gholami Rudi
ra
n
gi:
i
gnore
n
sub_detect() with -1 option
commit
|
commitdiff
|
tree
2012-10-10
Ali
Gholam
i
Rudi
r
angi: e
a
rly mot
i
f
detection heuristic
commit
|
commitdiff
|
tree
2012-10-07
A
li Gho
l
ami Rudi
r
an
g
i: make the -1 ar
g
ument
j
um
p
sizes wi
t
h at least
.
.
.
commit
|
commitdiff
|
tree
2012-10-03
Ali Ghol
a
m
i Rud
i
ran
g
i: add -e to perform exhaustive search
commit
|
commitdiff
|
tree
2012-10-03
Ali
Gholami
Rudi
r
angi: perfor
m
the ma
t
ching only on vali
d
n
o
d
e
s
commit
|
commitdiff
|
tree
2012-09-30
Ali Gholami Rudi
r
angi: use fanmod by default
commit
|
commitdiff
|
tree
2012-09-29
A
l
i Gholami Rud
i
ra
n
gi: ad
d
-f to u
s
e fanmod instead of
ka
v
osh
commit
|
commitdiff
|
tree
2012-09-29
Ali Gholami Rudi
conv
:
the fi
n
al arguments of c
o
nv are
the q
u
ery
p
ro
t
eins
commit
|
commitdiff
|
tree
2012-09-29
Ali Gh
o
lami Rudi
adopt
a new
file format to rep
o
rt
motif pr
o
teins
commit
|
commitdiff
|
tree
2012-09-29
Ali
G
holami Rudi
Makefile: changin
g
rangi
.
h sho
u
ld force
a rebuild
commit
|
commitdiff
|
tree
2012-09-28
Ali
Gh
o
lami Rudi
rangi-0
.
0
commit
|
commitdiff
|
tree
