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README: briefly introduce programs besides rangi
2012-10-17
Ali Gho
l
ami Rudi
READM
E
:
bri
e
fl
y
introd
u
ce
p
rograms bes
i
des rangi
commit
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commitdiff
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tree
2012-10-17
Ali G
h
ol
a
m
i Rudi
R
E
A
DME: document th
e
new file
f
orm
a
t and mkrangi
.
sh
commit
|
commitdiff
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tree
2012-10-17
A
l
i Ghola
m
i Rudi
mkrangi
.
sh: creat
e
r
a
n
gi input
s
f
rom biological files
commit
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commitdiff
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tree
2012-10-17
Ali Gholam
i
Rud
i
rangi:
s
kip roots without
nsub col
o
rs
i
n the
i
r n
e
igh
b
orhood
commit
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commitdiff
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tree
2012-10-16
Ali Gh
o
la
m
i
Rudi
test: dot f
i
les ar
e
no longer suppor
t
ed
commit
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commitdiff
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tree
2012-10-16
Ali Ghol
a
mi Ru
d
i
bl2ex
p
: extract blast e-value fro
m
b
l
astp
output
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commitdiff
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tree
2012-10-16
Ali Gho
l
a
m
i R
u
di
fasta
f
ilt: filte
r
fasta fi
l
es
b
ased o
n
its
complexes
commit
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commitdiff
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tree
2012-10-16
A
l
i
G
ho
l
ami Rudi
meval:
c
o
unt the complexes containi
n
g a motif
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commitdiff
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tree
2012-10-16
Ali G
h
olami Rudi
rangi: -m uses matching to
id
e
ntify infeasible subg
r
aphs
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|
commitdiff
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tree
2012-10-16
Ali Gholami Rudi
p
roc: fix n
s
u
b_
d
e
t
e
c
t() for multip
l
e threads
commit
|
commitdiff
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tree
2012-10-16
Ali Ghol
a
m
i Rudi
conv: us
e
a hash table for stori
n
g protei
n
nam
e
s
commit
|
commitdiff
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tree
2012-10-16
A
l
i Ghola
m
i
Rudi
conv: s
w
itching to gramofone
-
style
i
nteraction fil
e
s
commit
|
commitdiff
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tree
2012-10-16
Ali Gholami Rudi
conv: fix
blast th
r
e
shold check
i
n
g
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commitdiff
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tree
2012-10-10
Ali Gholami Rudi
rangi: ignore nsub_detect()
with -1 o
p
tion
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|
commitdiff
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tree
2012-10-10
Ali
G
h
o
lami
R
udi
rangi:
e
a
r
ly motif detection heuristic
commit
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commitdiff
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tree
2012-10-07
Al
i
Gho
l
a
m
i Ru
d
i
rangi: make th
e
-1 argument jump s
i
zes
with at l
e
a
st
.
.
.
commit
|
commitdiff
|
tree
2012-10-03
Al
i
Gholami Ru
d
i
r
angi: a
d
d -e to pe
r
form
exhaust
i
ve sea
r
ch
commit
|
commitdiff
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tree
2012-10-03
A
li
G
holami Rud
i
ran
g
i: perform
t
he
m
atching only on
v
a
lid
nodes
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commitdiff
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tree
2012-09-30
Ali
G
h
o
l
ami Ru
d
i
rangi: us
e
fan
m
od by
d
efa
u
lt
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|
commitdiff
|
tree
2012-09-29
A
l
i
G
holami Rudi
rangi: add -f t
o
use fanm
o
d ins
t
ead of kavos
h
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commitdiff
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tree
2012-09-29
Ali Gholami Rudi
conv: the final arg
u
ments of conv ar
e
the q
u
e
r
y protei
n
s
commit
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tree
2012-09-29
Ali
G
h
olami Rudi
ado
p
t a new file format to re
p
o
r
t motif proteins
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tree
2012-09-29
Ali
G
h
olami Rudi
M
akef
i
l
e
:
c
hangi
n
g
rangi
.
h should
force a rebuild
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tree
2012-09-28
Ali Ghol
a
mi
R
udi
ran
g
i-0
.
0
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