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meval: count the complexes containing a motif
2012-10-16
Al
i
Gholami Rudi
meval: count the co
m
plexes co
n
taining a m
o
tif
commit
|
commitdiff
|
tree
2012-10-16
Ali Gholami
R
u
di
rangi: -m us
e
s matching to iden
t
ify
i
n
f
easibl
e
subgraphs
commit
|
commitdiff
|
tree
2012-10-16
Ali Gholami Rudi
p
r
oc: fix nsub_de
t
ect() for multiple threads
commit
|
commitdiff
|
tree
2012-10-16
A
li Gholami Rudi
conv:
u
se a hash t
a
ble for sto
r
ing pro
t
ein na
m
es
commit
|
commitdiff
|
tree
2012-10-16
Ali G
h
olam
i
Rudi
co
n
v: swi
t
ching t
o
gramofone-s
t
y
l
e interactio
n
files
commit
|
commitdiff
|
tree
2012-10-16
Ali Gholam
i
Rudi
c
o
nv
:
fix blast
t
hreshold checkin
g
commit
|
commitdiff
|
tree
2012-10-10
A
li
Gho
l
a
m
i
Rudi
rangi: ign
o
r
e nsub_d
e
tect()
w
ith -1 option
commit
|
commitdiff
|
tree
2012-10-10
Ali Gholami Rudi
rangi: early motif de
t
e
c
tion heuristic
commit
|
commitdiff
|
tree
2012-10-07
A
l
i
Gholami Ru
d
i
r
angi: make
t
he
-
1 argument jump si
z
es
w
i
th at lea
s
t
.
.
.
commit
|
commitdiff
|
tree
2012-10-03
Ali
G
holami Rudi
rangi:
add -e
to perform exhausti
v
e
search
commit
|
commitdiff
|
tree
2012-10-03
A
l
i Gholami Rudi
r
an
g
i
:
perfo
r
m
t
he matc
h
ing only on valid
nod
e
s
commit
|
commitdiff
|
tree
2012-09-30
Ali Gholami Rudi
r
angi: use fanm
o
d
b
y
default
commit
|
commitdiff
|
tree
2012-09-29
Al
i
Gholami Rudi
rangi
:
add -f to use fanmod
in
s
tead
o
f
kavosh
commit
|
commitdiff
|
tree
2012-09-29
Ali
Gholami Rudi
c
onv:
t
he
f
inal arg
u
m
ents o
f
conv
a
r
e
the
q
uery proteins
commit
|
commitdiff
|
tree
2012-09-29
Ali G
h
olam
i
Rudi
adopt a n
e
w fi
l
e format
t
o
report motif prot
e
ins
commit
|
commitdiff
|
tree
2012-09-29
Ali Gholami R
u
di
Mak
e
file: cha
n
gi
n
g
r
angi
.
h shou
l
d
f
orce
a
rebuild
commit
|
commitdiff
|
tree
2012-09-28
Ali
G
h
o
l
ami Rudi
r
a
ngi-0
.
0
commit
|
commitdiff
|
tree