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meval: count the complexes containing a motif
2012-10-16
A
li Gholam
i
Rudi
meval: count t
h
e complexes containing a m
o
tif
commit
|
commitdiff
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tree
2012-10-16
Ali G
h
olam
i
R
u
di
rangi: -m use
s
match
i
n
g to identify infeasible subgraphs
commit
|
commitdiff
|
tree
2012-10-16
A
l
i
G
h
olami Rudi
proc: fix nsub_det
e
c
t
() for multip
l
e threads
commit
|
commitdiff
|
tree
2012-10-16
Ali
Gholam
i
Rudi
co
n
v:
use a hash table for
stori
n
g pr
o
tein
n
ames
commit
|
commitdiff
|
tree
2012-10-16
Ali Gholami Ru
d
i
conv: switching
t
o gramofone-style
i
nteraction files
commit
|
commitdiff
|
tree
2012-10-16
Ali Gholami Rudi
c
o
nv:
f
ix b
l
ast thresho
l
d checking
commit
|
commitdiff
|
tree
2012-10-10
Ali Ghol
a
m
i R
u
di
rangi: ignore nsub_de
t
ect()
w
i
t
h -1 opt
i
on
commit
|
commitdiff
|
tree
2012-10-10
Ali Gho
l
ami Rudi
rangi: ear
l
y motif detection h
e
uri
s
t
i
c
commit
|
commitdiff
|
tree
2012-10-07
Ali Gho
l
ami R
u
di
r
a
ngi
:
make the -1 argume
n
t
jump size
s
with at least
.
.
.
commit
|
commitdiff
|
tree
2012-10-03
Ali Gho
l
ami Rudi
rangi: add -e
to
perform exhaus
t
ive search
commit
|
commitdiff
|
tree
2012-10-03
Ali Gholami Rudi
rangi: pe
r
for
m
the matching onl
y
on va
l
id nod
e
s
commit
|
commitdiff
|
tree
2012-09-30
Ali Gholam
i
Ru
d
i
ra
n
gi: use
f
a
nmod by defau
l
t
commit
|
commitdiff
|
tree
2012-09-29
Ali Gholami Rudi
ran
g
i: ad
d
-f to use
fanmod i
n
stead o
f
k
avosh
commit
|
commitdiff
|
tree
2012-09-29
Ali Gholami Rud
i
conv: th
e
final arguments o
f
c
o
nv are t
h
e query protein
s
commit
|
commitdiff
|
tree
2012-09-29
Ali Ghol
a
m
i
Rudi
a
dopt a new file format to repor
t
motif proteins
commit
|
commitdiff
|
tree
2012-09-29
Ali Gholami Rudi
Makefil
e
: c
h
anging rangi
.
h should forc
e
a r
e
build
commit
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commitdiff
|
tree
2012-09-28
Ali
Gholami Rudi
rangi-0
.
0
commit
|
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tree