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2023-05-26	Naama Menda	Merge pull request #14 from solgenomics/topic/update_annot	commit \| commitdiff \| tree
2022-07-11	Naama Menda	fix file extention cleaning	commit \| commitdiff \| tree
2022-07-08	Naama Menda	add position to TomDel dbxrefs	commit \| commitdiff \| tree
2022-06-23	Naama Menda	get file basename	commit \| commitdiff \| tree
2022-06-23	Naama Menda	loader for SGN TomDel dbxrefs	commit \| commitdiff \| tree
2021-04-28	Naama Menda	Merge branch 'master' of https://github.com/solgenomics...	commit \| commitdiff \| tree
2021-04-28	Naama Menda	clean phylogenes loader error log	commit \| commitdiff \| tree
2020-01-22	Naama Menda	load valencia photos	commit \| commitdiff \| tree
2018-09-21	Naama Menda	Merge pull request #10 from solgenomics/topic/varitome_images	commit \| commitdiff \| tree
2018-09-19	Naama Menda	fix already uploaded image lookup	commit \| commitdiff \| tree
2018-09-19	Naama Menda	get the correct tag name	commit \| commitdiff \| tree
2018-09-19	Naama Menda	get the correct stock name	commit \| commitdiff \| tree
2018-09-19	Naama Menda	call correct tag exists function	commit \| commitdiff \| tree
2018-09-19	Naama Menda	upload the image when not in test mode	commit \| commitdiff \| tree
2017-04-14	Naama Menda	remove variable overloading	commit \| commitdiff \| tree
2017-03-03	Naama Menda	parse plots correctly	commit \| commitdiff \| tree
2017-02-02	Naama Menda	incrementing plot numbers by trial name	commit \| commitdiff \| tree
2017-01-30	Naama Menda	adjust pattern match for replicate, block, plot numbers	commit \| commitdiff \| tree
2017-01-25	Naama Menda	parse Alpha design trials	commit \| commitdiff \| tree
2017-01-23	Naama Menda	fix indent for better readability	commit \| commitdiff \| tree
2017-01-23	Naama Menda	typos	commit \| commitdiff \| tree
2017-01-23	Naama Menda	make sure to fetch only plots associated with phenotyping...	commit \| commitdiff \| tree
2017-01-20	Naama Menda	tweak pattern matching for block and plot numbers	commit \| commitdiff \| tree
2016-02-09	Naama Menda	Merge pull request #7 from solgenomics/topic/system_cvterms	commit \| commitdiff \| tree
2015-03-16	Naama Menda	adjust CIAT trials loader to updates sent from Hernan	commit \| commitdiff \| tree
2015-02-27	Naama Menda	manually load bulk locus curator annotations	commit \| commitdiff \| tree
2015-02-17	Naama Menda	loader for ciat cassava phenotyping data	commit \| commitdiff \| tree
2015-02-16	Naama Menda	add new ciat project types	commit \| commitdiff \| tree
2015-02-13	Naama Menda	make sure projects are not duplicated	commit \| commitdiff \| tree
2015-02-12	Naama Menda	load/find breeding program , add nd_geolocation_id...	commit \| commitdiff \| tree
2015-02-12	Naama Menda	modified loader for CIAT trial data, trial types, geolocations	commit \| commitdiff \| tree
2014-11-18	Naama Menda	function for finding the feature object based on the...	commit \| commitdiff \| tree
2014-07-15	Naama Menda	typo in POD	commit \| commitdiff \| tree
2014-07-15	Naama Menda	typo	commit \| commitdiff \| tree
2014-07-15	Naama Menda	loader for the pepper genome gene models V1.55	commit \| commitdiff \| tree
2014-06-13	Naama Menda	remove version number from locus id for creating links...	commit \| commitdiff \| tree
2014-03-14	Naama Menda	correct documentation for storing terms with a months...	commit \| commitdiff \| tree
2014-01-21	Naama Menda	fix documentation for loading snp files	commit \| commitdiff \| tree
2013-06-25	Naama Menda	root term for plant_anatomy has changed since we last...	commit \| commitdiff \| tree
2013-06-24	Naama Menda	not a good idea to automatically update obsolete terms...	commit \| commitdiff \| tree
2013-06-24	Naama Menda	updated code for flagging obsolete annotations, since...	commit \| commitdiff \| tree
2013-06-16	Naama Menda	print debugging info when parents are stored	commit \| commitdiff \| tree
2013-06-16	Naama Menda	cleaning clone names in the loading script	commit \| commitdiff \| tree
2013-06-09	Naama Menda	remove leading and trailing spaces from all locus searhc...	commit \| commitdiff \| tree
2013-04-13	Naama Menda	debug info about loading of plot stocks	commit \| commitdiff \| tree
2013-04-13	Naama Menda	add project name and year options	commit \| commitdiff \| tree
2013-04-13	Naama Menda	snp loader creates now new stocks if not found in db	commit \| commitdiff \| tree
2013-04-12	Naama Menda	add code from merge	commit \| commitdiff \| tree
2013-04-12	Naama Menda	resolved conflict	commit \| commitdiff \| tree
2013-04-12	Naama Menda	support for multilocation files	commit \| commitdiff \| tree
2013-04-07	Naama Menda	refining clone name search	commit \| commitdiff \| tree
2013-04-07	Naama Menda	skipping non-numeric values	commit \| commitdiff \| tree
2013-04-07	Naama Menda	change surviving plants column header	commit \| commitdiff \| tree
2013-04-06	Naama Menda	loader based on NRCRI data. Should work with other...	commit \| commitdiff \| tree
2013-04-06	Naama Menda	typo	commit \| commitdiff \| tree
2013-04-06	Naama Menda	merged changes	commit \| commitdiff \| tree
2013-04-06	Naama Menda	loader for cassava projects and their metadata	commit \| commitdiff \| tree
2013-03-30	Naama Menda	loader for cassava clones and synonyms	commit \| commitdiff \| tree
2013-03-28	Naama Menda	refined options for loading solcap data	commit \| commitdiff \| tree
2012-11-29	Naama Menda	print shorter mini-ref	commit \| commitdiff \| tree
2012-11-29	Naama Menda	reference_id in locusgroup_member is a dbxref	commit \| commitdiff \| tree
2012-11-28	Naama Menda	cxgn members returns a data structure with the locus...	commit \| commitdiff \| tree
2012-11-28	Naama Menda	function for returning the second level object of locusgroup...	commit \| commitdiff \| tree
2012-11-28	Naama Menda	option for passing locusgroup_name as an arg for checking...	commit \| commitdiff \| tree
2012-11-05	Naama Menda	tgrc wild accessions	commit \| commitdiff \| tree
2012-11-05	Naama Menda	loader for tgrc wild accessions	commit \| commitdiff \| tree
2012-11-04	Naama Menda	cassava and barley loaders	commit \| commitdiff \| tree
2012-11-03	Naama Menda	Merge branch 'master' of github.com:solgenomics/Phenome	commit \| commitdiff \| tree
2012-11-03	Naama Menda	correct tab-delimited format	commit \| commitdiff \| tree
2012-10-31	Naama Menda	population should be for mutatns	commit \| commitdiff \| tree
2012-10-31	Naama Menda	loader for the Tsukuba mutants	commit \| commitdiff \| tree
2012-10-04	Naama Menda	tweak scale cvtermprop loading script	commit \| commitdiff \| tree
2012-05-02	Naama Menda	add updating of genome locus identifier, description...	commit \| commitdiff \| tree
2012-04-26	Naama Menda	add a user name option	commit \| commitdiff \| tree
2012-04-18	Naama Menda	typo	commit \| commitdiff \| tree
2012-04-18	Naama Menda	added a check for stock_owner row	commit \| commitdiff \| tree
2012-04-17	Naama Menda	corrected loader for cassava phenotyping projects	commit \| commitdiff \| tree
2012-04-17	Naama Menda	corrected loader for cassava phenotyping projects	commit \| commitdiff \| tree
2012-03-15	Naama Menda	error in fetching dbxref accession for a pub object	commit \| commitdiff \| tree
2012-03-15	Naama Menda	modified ontology association script to work with stocks...	commit \| commitdiff \| tree
2012-03-03	Naama Menda	updated dump script. Make this a cron job ..	commit \| commitdiff \| tree
2012-01-11	Naama Menda	removing version numbers from Solyc gene ids	commit \| commitdiff \| tree
2012-01-09	Naama Menda	moved the genotype json to genotyepprop	commit \| commitdiff \| tree
2012-01-06	Naama Menda	script for reloading the solcap snp positions as designated...	commit \| commitdiff \| tree
2011-12-23	Naama Menda	loader for solcap Infinium array snp genotypes	commit \| commitdiff \| tree
2011-12-20	Naama Menda	fixed typos	commit \| commitdiff \| tree
2011-12-18	Naama Menda	loader for the cassava phenotypes	commit \| commitdiff \| tree
2011-12-17	Naama Menda	silly typo	commit \| commitdiff \| tree
2011-12-16	Naama Menda	polishing script for inserting/updating potato loci...	commit \| commitdiff \| tree
2011-12-15	Naama Menda	loader for the potato genome loci	commit \| commitdiff \| tree
2011-12-15	Naama Menda	printing to a large sequence file	commit \| commitdiff \| tree
2011-12-14	Naama Menda	fixed fetching of Solyc mrna sequences	commit \| commitdiff \| tree
2011-12-14	Naama Menda	adding itag mrna sequences to loci blast db	commit \| commitdiff \| tree
2011-11-23	Naama Menda	fixed cvterm name for plot and member stock relationship...	commit \| commitdiff \| tree
2011-11-22	Naama Menda	capitalizing Quality term	commit \| commitdiff \| tree
2011-11-22	Naama Menda	refining add_unigene method	commit \| commitdiff \| tree
2011-11-16	Naama Menda	Merge branch 'master' into topic/locus_controller	commit \| commitdiff \| tree
2011-11-16	Naama Menda	missing bind value	commit \| commitdiff \| tree
2011-11-15	Naama Menda	added locus field to the search	commit \| commitdiff \| tree
2011-11-15	Naama Menda	adding disconnect for dbh without autocommit	commit \| commitdiff \| tree
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Scripts and libraries for managing the SGN Phenome database

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