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minor fixes in ditribution files
2010-05-27
Tee
m
u Murtola
F
i
xed a few signed/unsigned com
p
arison warnin
g
s
.
commit
|
commitdiff
|
tree
2010-05-21
Teemu Murtola
S
e
lection
s
compiler comments a
n
d deb
u
gging aids
.
commit
|
commitdiff
|
tree
2010-05-21
Tee
m
u
Murt
o
l
a
Simplified selection c
o
m
p
ilatio
n
,
fixing a
bug
.
commit
|
commitdiff
|
tree
2010-05-20
Tee
m
u Murtola
A
d
ded geminate
.
c to src/tools/CMake
L
ists
.
txt
.
commit
|
commitdiff
|
tree
2010-05-20
Teemu Murtola
Reduc
e
d
me
m
or
y
usage fo
r
static selection
s
.
commit
|
commitdiff
|
tree
2010-05-20
Teemu Murtola
Selection compiler bu
g
fix
.
commit
|
commitdiff
|
tree
2010-05-20
Teemu Murtola
F
i
xe
d
sav
e
_realloc() to not lea
k
m
e
m
or
y
.
commit
|
commitdiff
|
tree
2010-05-20
Teemu
Murtola
R
e
du
c
ed memory use for arithmetic
i
n selections
.
commit
|
commitdiff
|
tree
2010-05-20
Teemu Murtola
Removed com
p
iler
w
a
rnings
.
commit
|
commitdiff
|
tree
2010-05-19
Teemu Mur
t
ola
M
erge branch
'master'
o
f git@gi
t
.
grom
a
cs
.
or
g
:
gr
o
macs
commit
|
commitdiff
|
tree
2010-05-19
Tee
m
u
Murtola
Removed obsolete selection
cod
e
.
commit
|
commitdiff
|
tree
2010-05-19
Teemu Murtola
Big r
e
work of selection co
m
pil
a
tio
n
/evaluation
.
commit
|
commitdiff
|
tree
2010-05-14
Teem
u
Murtol
a
Restructured se
l
e
c
tion sub
e
xpres
s
ion
compilat
i
o
n
.
commit
|
commitdiff
|
tree
2010-05-14
Te
e
mu Murtola
B
a
si
c
selection memory
p
o
o
ling
.
commit
|
commitdiff
|
tree
2010-05-14
Te
e
mu Murtola
S
i
mpler special cas
e
subexpression
h
andling
.
commit
|
commitdiff
|
tree
2010-05-14
Teemu Mu
r
tola
S
e
lection compiler
bool flags into a single
field
.
commit
|
commitdiff
|
tree
2010-05-11
T
e
emu Murt
o
la
Updated share/top Make
f
ile
.
am fi
l
es
.
commit
|
commitdiff
|
tree
2010-05-11
Teemu Murto
l
a
Grid-based u
t
i
lity nbsearch impl
e
mentation
.
commit
|
commitdiff
|
tree
2010-05-11
Teemu Murtola
Impr
o
ved neigh
b
o
r
s
ea
r
ching API for an
a
lysis
.
commit
|
commitdiff
|
tree
2010-05-07
Teemu Murtol
a
Minor improvements t
o
selection help
.
commit
|
commitdiff
|
tree
2010-05-07
Teemu Murt
o
la
Basic arithmetic
e
xpression support in selec
t
ion
s
.
commit
|
commitdiff
|
tree
2010-05-06
Teemu Murto
l
a
More memory opti
m
izat
i
on
s
for
selec
t
ions
.
commit
|
commitdiff
|
tree
2010-05-06
Teemu
Murtola
Redu
c
ed
peak memory usage f
o
r selections
.
commit
|
commitdiff
|
tree
2010-05-05
T
eem
u
M
u
r
t
ola
Fixed a bu
g
in gmx_w
c
match()
.
commit
|
commitdiff
|
tree
2010-04-29
Teemu Murtola
F
ixe
d
s
o
me me
m
ory lea
k
s
.
commit
|
commitdiff
|
tree
2010-04-29
Teemu Murt
o
la
Fix
f
o
r
trjconv
-e option (bug #305)
.
commit
|
commitdiff
|
tree
2010-04-28
Teemu
M
urtola
Fixed g_
w
ha
m
error message
(
bugz
i
ll
a
#397)
.
commit
|
commitdiff
|
tree
2010-04-28
Tee
m
u
Mur
t
ola
A
d
ded
a few f
u
nctions for freei
n
g m
e
mory
.
commit
|
commitdiff
|
tree
2010-04-28
T
eemu Murtola
Selecti
o
n based
o
n molecule numb
e
rs
.
commit
|
commitdiff
|
tree
2010-04-28
Teemu M
u
rtola
F
i
xed a m
e
mory leak in select
i
on code
.
commit
|
commitdiff
|
tree
2010-04-27
Teemu Murtola
"same" selecti
o
ns with string keyw
o
rds
.
commit
|
commitdiff
|
tree
2010-04-27
T
eemu Mu
r
t
o
la
Support
f
o
r
selection stri
n
g keywo
r
d
s as para
m
s
.
commit
|
commitdiff
|
tree
2010-04-27
Teemu Murtola
Fixed a memory leak in
p
arse_common_arg
s
.
commit
|
commitdiff
|
tree
2010-04-27
Teemu Mur
t
ola
Removed incorrect m
a
k
e mdrun cmds in Ma
k
efile
.
am
.
commit
|
commitdiff
|
tree
2010-04-26
Teemu Mur
t
ola
M
erge bra
n
ch 'master' o
f
git@git
.
groma
c
s
.
org:groma
c
s
commit
|
commitdiff
|
tree
2010-04-26
Teemu Murtola
I
mproved sele
c
tion
keyword "sa
m
e"
.
commit
|
commitdiff
|
tree
2010-04-26
Teemu Mur
t
ola
Add
e
d so
m
e synonyms f
o
r common selection keyword
s
.
commit
|
commitdiff
|
tree
2010-04-26
Teemu Murtola
Fi
x
ed minor m
e
mor
y
leak
on s
o
me se
l
ection errors
.
commit
|
commitdiff
|
tree
2010-04-26
Teemu Murtola
Imp
r
ovemen
t
to commit 67311e3
.
commit
|
commitdiff
|
tree
2010-04-26
Teemu Murtol
a
Impro
v
ed sele
c
tion subexpre
s
s
i
o
n
compilat
i
on
.
commit
|
commitdiff
|
tree
2010-04-22
Teemu Murtola
S
ep
a
rate me
t
hod for freein
g
select
i
o
n
me
t
h
o
d d
a
ta
.
commit
|
commitdiff
|
tree
2010-04-22
Teemu Murtola
Ma
d
e
t
wo
s
e
lection parser functions
n
on-sta
t
ic
.
commit
|
commitdiff
|
tree
2010-04-22
Teemu Murtol
a
Selection co
m
pil
e
r memory
a
llocation bug f
i
x
.
commit
|
commitdiff
|
tree
2010-04-22
Teemu Murt
o
l
a
Suppo
r
t
init_frame in static
s
election
m
ethods
.
commit
|
commitdiff
|
tree
2010-04-20
Teemu
M
urt
o
la
Ad
d
e
d
g_select to progr
a
m
s
.
txt
.
commit
|
commitdiff
|
tree
2010-04-20
T
eemu Murtola
More robust
libtool p
r
efix stripping
.
commit
|
commitdiff
|
tree
2010-04-12
T
ee
m
u Murto
l
a
C
++ fixes for snew() and friends
.
commit
|
commitdiff
|
tree
2010-04-08
Teemu Mu
r
to
l
a
Au
t
oconf check
s
for version info
g
enerati
o
n
.
commit
|
commitdiff
|
tree
2010-03-24
Teemu Murtola
Fixe
d
genversion
.
sh on Macs
.
commit
|
commitdiff
|
tree
2010-03-11
T
ee
m
u Murto
l
a
Minor version strin
g
update
.
commit
|
commitdiff
|
tree
2010-03-05
Teemu Murtola
Improved version strings
.
commit
|
commitdiff
|
tree
2010-03-04
Teemu Murtola
Added selec
t
io
n
examples
.
commit
|
commitdiff
|
tree
2010-03-01
T
e
emu Murtola
Fixed a bug causing incorr
e
ct empty select
i
o
n
s
.
commit
|
commitdiff
|
tree
2010-02-26
Teemu Murtola
Im
p
ro
v
ed version f
o
r builds fr
o
m
mo
d
i
f
ied trees
.
commit
|
commitdiff
|
tree
2010-02-22
Teemu Mur
t
ola
Backported git
sha1 vers
i
on string (
b
ugzilla #393
)
.
commit
|
commitdiff
|
tree
2010-02-18
Teemu
Murtola
A more intui
t
ive fix
to
copy
r
ite
.
c depend
e
ncy
.
commit
|
commitdiff
|
tree
2010-02-18
Tee
m
u Mur
t
ola
Show git sh
a
1 hash in
v
ersion string (bug
#393)
.
commit
|
commitdiff
|
tree
2009-12-19
Teemu Mur
t
o
l
a
F
ixed int
e
ractive s
e
lection
h
e
lp
.
commit
|
commitdiff
|
tree
2009-12-17
Teemu Murt
o
la
V
e
loc
i
ties and
f
o
r
ces for sel
e
ctions
.
commit
|
commitdiff
|
tree
2009-12-16
Teemu Murtola
U
s
e
r
ead_stdi
n
_lin
e
() for
selections from a pipe
.
commit
|
commitdiff
|
tree
2009-12-14
Teem
u
Mu
r
t
ola
Bette
r
selection stdin handling
.
commit
|
commitdiff
|
tree
2009-11-11
Teemu M
u
rtola
Fixed segfaults wit
h
empty sel
e
cti
o
ns
.
commit
|
commitdiff
|
tree
2009-11-11
Teemu Murtola
Mor
e
general sele
c
tion pa
r
ser gra
m
m
ar
.
commit
|
commitdiff
|
tree
2009-11-10
Teemu Murtola
gmxcpp fixes
(
bug #360
p
lus
othe
r
fi
x
es)
.
commit
|
commitdiff
|
tree
2009-11-10
Tee
m
u Murtola
gmxcpp fixes (bug #
3
60 pl
u
s other fi
x
es)
.
commit
|
commitdiff
|
tree
2009-11-10
Teemu Mu
r
tola
Added
a
gmxdump -p o
p
tion
to preprocess
to
p
olo
g
y
.
commit
|
commitdiff
|
tree
2009-11-09
Teemu Murtola
Some simple memo
r
y
lea
k
fix
e
s
.
commit
|
commitdiff
|
tree
2009-11-09
Teemu Murtola
A
dded a res
i
nd selection keyword
.
commit
|
commitdiff
|
tree
2009-11-06
Teemu
Murtola
Selection merge
n
ow
wo
r
ks with co
n
stant
p
o
si
t
ions
.
commit
|
commitdiff
|
tree
2009-11-06
Teemu Murt
o
la
A bit more mo
d
ular selection
po
s
it
i
on hand
l
ing
.
commit
|
commitdiff
|
tree
2009-11-06
Teemu Murtola
Better
g
_ene
r
gy -nm
o
l
b
ehavior (bug #365
)
.
commit
|
commitdiff
|
tree
2009-11-06
Teemu Murtola
B
e
tt
e
r g
_
e
n
erg
y
-nmo
l
behavi
o
r
(bug
#
365)
.
commit
|
commitdiff
|
tree
2009-11-05
Teemu
M
urt
o
la
More modular pos
i
ti
o
n han
d
ling
.
commit
|
commitdiff
|
tree
2009-11-05
Teemu Murtola
More flexible selecti
o
n m
e
rg
i
ng
.
commit
|
commitdiff
|
tree
2009-11-05
Teemu Murtol
a
S
e
lec
t
ion
m
erg
e
keyword fixes
.
commit
|
commitdiff
|
tree
2009-11-05
Teemu
Murtola
A
d
ded a missing ret
u
rn in
gmx_
f
i
o
_
get_file
_
md5()
.
commit
|
commitdiff
|
tree
2009-11-04
Teemu Murtola
Addi
t
i
onal selection keywords (plus
and merge)
.
commit
|
commitdiff
|
tree
2009-11-02
Teemu
Murtola
I
m
proved Doxygen docs for selec
t
ion internals
.
commit
|
commitdiff
|
tree
2009-10-29
Teemu Murtola
Improved intera
c
tive sel
e
ctio
n
input
.
commit
|
commitdiff
|
tree
2009-10-28
T
eemu Murt
o
l
a
Updated sele
c
t
i
o
n
documenta
t
ion
.
commit
|
commitdiff
|
tree
2009-10-27
T
e
emu Mu
r
tola
Selec
t
ion par
s
er
c
leanup
.
commit
|
commitdiff
|
tree
2009-10-26
Teemu Murtola
A
nalysis lib
.
can
n
ow ana
l
y
z
e just a
t
op
o
logy
.
commit
|
commitdiff
|
tree
2009-10-26
Teemu Murto
l
a
Fixed selecti
o
n
s
i
ntrodu
c
e
d in com
m
i
t 82ec
f
01
.
.
.
commit
|
commitdiff
|
tree
2009-10-26
Teemu
M
urtola
Fixed
a
s
e
gfault in selection li
b
.
commit
|
commitdiff
|
tree
2009-10-21
Teemu
M
urtola
F
o
u
r
ier di
h
edral
s
(dih
.
type 5
)
should now wo
r
k
.
commit
|
commitdiff
|
tree
2009-10-21
Teemu Murtola
Four
i
er dihedra
l
s (di
h
.
typ
e
5) s
h
ould
now w
o
rk
.
commit
|
commitdiff
|
tree
2009-10-09
T
e
emu Murtola
Imp
l
emente
d
selections li
k
e
"o
c
cu
p
an
c
y 0
.
5
to 1"
.
commit
|
commitdiff
|
tree
2009-10-09
Teemu Murtola
M
o
r
e
f
lexible
s
e
lection p
a
rser synta
x
.
commit
|
commitdiff
|
tree
2009-10-08
Tee
m
u Murtola
Better
e
r
ror ha
n
dli
n
g in selection parsing
.
commit
|
commitdiff
|
tree
2009-10-08
Teemu Murtola
Reor
g
anization of selec
t
ion parser
.
commit
|
commitdiff
|
tree
2009-10-08
Teemu
Murt
o
la
Fixed/
b
e
t
ter
s
election name i
n
iti
a
lization
.
commit
|
commitdiff
|
tree
2009-10-08
T
e
emu Murtola
S
el
e
ction
o
utput to xvgr
f
iles is now cleaner
.
commit
|
commitdiff
|
tree
2009-10-07
Teemu Murt
o
la
Renamed IN
T
to INTEGER in selection parser
.
commit
|
commitdiff
|
tree
2009-10-07
T
e
em
u
Murtola
CM
a
ke checks fo
r
re
g
ular exp
r
e
s
sio
n
s
u
pp
o
rt
.
commit
|
commitdiff
|
tree
2009-10-07
Teemu
M
urtola
C
M
ake
build for sele
c
tio
n
libr
a
ry
.
commit
|
commitdiff
|
tree
2009-10-07
Teemu
Murtola
Fixed some Wind
o
ws bui
l
d
is
s
ue
s
with selections
.
commit
|
commitdiff
|
tree
2009-10-06
Teem
u
Murto
l
a
Autoconf checks for regular
e
xpr
e
ssion suppo
r
t
.
commit
|
commitdiff
|
tree
2009-10-06
Teemu Murtola
Don't use POSIX
fnmatch
(
) for
pattern m
a
tchin
g
.
commit
|
commitdiff
|
tree
2009-10-05
Tee
m
u Mur
t
ola
Merge branch 'mas
t
er'
of
g
it@git
.
grom
a
cs
.
org:gromacs
commit
|
commitdiff
|
tree
2009-10-05
Teem
u
M
u
rtola
Fixed
m
e
m
o
ry handling issues in selections
.
commit
|
commitdiff
|
tree
next