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Reduce console log output from sample_restraint tests.
2020-05-25
M
.
Eric Ir
r
gan
g
Reduce c
o
nsole lo
g
ou
t
p
u
t f
r
o
m sample_restrain
t
tests
.
commit
|
commitdiff
|
tree
2020-05-21
M
.
Eric Irrgang
Normalize gmxapi rela
t
ed re
l
ease-2020 j
o
b
l
o
g
i
c
.
commit
|
commitdiff
|
tree
2020-03-10
M
.
Eric Irr
g
ang
D
i
stinguish
D
o
c
ker images for different release requirements
.
commit
|
commitdiff
|
tree
2020-03-07
M
.
Eric
I
r
r
gang
Ma
n
age the list
o
f i
m
ag
e
tags in
D
ocker build script
.
commit
|
commitdiff
|
tree
2019-12-27
M
.
Eric
Ir
r
gang
Update int
e
r
sp
h
i
nx configuration
.
commit
|
commitdiff
|
tree
2019-12-26
M
.
Eric Irrg
a
ng
Set Sphinx de
f
ault role
.
commit
|
commitdiff
|
tree
2019-12-26
M
.
Eric Irrgang
Fi
x
external web
l
ink
.
commit
|
commitdiff
|
tree
2019-12-26
M
.
Eric
Irrgang
C
l
ean up
S
phinx i
n
terpreted
text in t
h
e defau
l
t r
o
le
.
commit
|
commitdiff
|
tree
2019-12-19
M
.
Eri
c
Irrgang
Add issue
tracking
fo
r
deprecations
.
commit
|
commitdiff
|
tree
2019-12-18
M
.
Eric Irrgang
Upda
t
e re
f
er
e
nce to un
c
rustify
and clan
g
-
format
.
commit
|
commitdiff
|
tree
2019-12-17
M
.
Eric Irrg
a
ng
Be more spec
i
fi
c
with
c
lang-forma
t
su
g
g
e
st
i
ons
.
commit
|
commitdiff
|
tree
2019-12-11
M
.
Eric Irrgang
gm
x
api documentation readability impro
v
ements
.
commit
|
commitdiff
|
tree
2019-12-11
M
.
Eric Irrgang
gmxapi
documentation formatting impr
o
vements
.
commit
|
commitdiff
|
tree
2019-12-10
Mark Ab
r
a
ham
Simplify gmxap
i
RPATH handling
commit
|
commitdiff
|
tree
2019-11-05
M
.
Eric Irrgang
Up
d
ate googletest loca
t
i
o
n
i
n COPYING
.
commit
|
commitdiff
|
tree
2019-11-01
M
.
Eric Irrga
n
g
Fix documentati
o
n typo
.
commit
|
commitdiff
|
tree
2019-10-31
M
.
Eric Irrgang
Deduplicate gm
x
a
pi d
o
c
umentation
.
commit
|
commitdiff
|
tree
2019-10-25
M
.
Eric Irrgang
I
mprove
gmxapi mdrun test
.
commit
|
commitdiff
|
tree
2019-10-16
M
.
Er
i
c Irrgang
Minor tidying to mdrun
.
py
commit
|
commitdiff
|
tree
2019-10-16
M
.
Er
i
c
Irrgang
M
ino
r
cle
a
n-
u
p to gmxapi
package
.
commit
|
commitdiff
|
tree
2019-10-16
M
.
E
ric
Irr
g
ang
U
pdate gm
x
ap
i
.
ve
r
s
ion mod
u
le
.
commit
|
commitdiff
|
tree
2019-10-15
M
.
Eric Irrgang
Fi
x
log
i
c error in
S
taticSourceM
a
nager intialization
.
commit
|
commitdiff
|
tree
2019-10-15
M
.
Eric Irrgang
Add note about libpython requirement to gmxa
p
i install
.
.
.
commit
|
commitdiff
|
tree
2019-10-13
M
.
Er
i
c
I
r
rga
n
g
Update sample_re
s
trai
n
t
documentatio
n
entry poi
n
ts
.
commit
|
commitdiff
|
tree
2019-10-13
M
.
Eric
Ir
r
gang
Test float and
i
nt gmxapi parameter
u
pdates
.
commit
|
commitdiff
|
tree
2019-10-13
M
.
Eric Irr
g
a
n
g
Usability updates for gmxap
i
/
d
ocs Docker ima
g
e
.
commit
|
commitdiff
|
tree
2019-10-12
M
.
Eric
I
rrga
n
g
Improve
parameter ty
p
i
n
g
for
g
mxapi
simulation p
a
ra
m
eter
.
.
.
commit
|
commitdiff
|
tree
2019-10-08
M
.
E
ric I
r
rgan
g
Update handling of CMake polic
y
68
.
.
commit
|
commitdiff
|
tree
2019-10-07
M
.
E
r
ic Irrgan
g
Update rpa
t
h comme
n
ts
in
src/
a
pi/cpp
commit
|
commitdiff
|
tree
2019-09-11
P
aul Bauer
Add missing gmxapi requiremen
t
s
commit
|
commitdiff
|
tree
2019-09-11
M
.
Eric
I
r
rgang
Allow gmxapi
.
m
drun
to
prop
e
rly dispatch simula
t
ion
.
.
.
commit
|
commitdiff
|
tree
2019-09-10
M
.
Eric Irrgang
Fix pa
r
am
e
ter key look-up in gmx
a
pi TPR reader
.
commit
|
commitdiff
|
tree
2019-09-10
M
.
Eric I
r
rgang
Mak
e
gmxcli pyte
s
t fixture
m
ore
robust
.
commit
|
commitdiff
|
tree
2019-08-27
M
.
Eric
Irrgang
Ad
d
sample_
r
estraint Python tests to `check`
t
arget
.
commit
|
commitdiff
|
tree
2019-08-27
M
.
Eric Irrgang
Rem
o
ve unu
s
ed forwa
r
d
declar
a
t
i
ons
.
commit
|
commitdiff
|
tree
2019-08-26
M
.
Eric Irrgang
R
e
a
rrange exposure of gmxa
p
ico
m
pat
s
imulatio
n
inp
u
t
.
.
.
commit
|
commitdiff
|
tree
2019-08-19
M
.
Eric Ir
r
g
a
ng
Cle
a
n
u
p
g
m
xapi docum
e
ntat
i
on build
.
commit
|
commitdiff
|
tree
2019-08-19
M
.
Eric Irrgang
Add subgraph
a
nd w
h
ile_loop operations
.
commit
|
commitdiff
|
tree
2019-08-14
M
.
Eric Irrgang
Fi
x
logic err
o
r i
n
python
_
pa
c
kaging/src/CMakeLis
t
s
.
t
xt
commit
|
commitdiff
|
tree
2019-08-14
M
.
Eric Ir
r
gang
M
i
nor optimization to `pip
i
nsta
l
l` in gmxapi
CI b
u
ild
.
commit
|
commitdiff
|
tree
2019-08-13
M
.
Eric Irrg
a
ng
Improve sam
p
l
e
_
r
estrai
n
t project
in
t
egration
.
commit
|
commitdiff
|
tree
2019-08-13
M
.
Eric Irr
g
a
ng
Don't
ins
t
all
googletest
.
commit
|
commitdiff
|
tree
2019-08-13
M
.
Eric
I
rrgan
g
Map
g
mxapi C++ exceptions to Python e
x
ceptions
.
commit
|
commitdiff
|
tree
2019-08-08
M
.
Eric Irrgang
Le
t
b
a
se GROMACS docker image be a li
t
tle m
o
re useful
.
commit
|
commitdiff
|
tree
2019-08-06
M
.
E
ric
Irrgang
Separate out Operatio
n
DetailsB
a
se
.
commit
|
commitdiff
|
tree
2019-08-05
M
.
Eri
c
Irr
g
an
g
S
e
pa
r
ate out OperationDirec
t
or
.
commit
|
commitdiff
|
tree
2019-08-02
M
.
Eric
I
rrgang
Rear
c
hi
t
ect gmxapi
.
ope
r
ati
o
n
commit
|
commitdiff
|
tree
2019-07-29
Berk H
e
ss
Remove LJ Ewald c
o
rr
e
c
tion tables
commit
|
commitdiff
|
tree
2019-07-29
Be
r
k Hess
Add initialization to t_n
r
nb
commit
|
commitdiff
|
tree
2019-07-24
M
.
Eric Irrg
a
n
g
Remove one of t
h
e examples
from sample_restrain
t
.
commit
|
commitdiff
|
tree
2019-07-02
M
.
Eri
c
Irrgang
Pyth
o
n detecti
o
n consolidati
o
n
.
commit
|
commitdiff
|
tree
2019-07-02
M
.
Eric Irrgang
Rear
r
ang
e
some
defini
t
i
ons
.
commit
|
commitdiff
|
tree
2019-06-28
Christi
a
n Blau
Add co
p
y a
n
d move operation
s
to density simila
r
ity
commit
|
commitdiff
|
tree
2019-06-27
M
.
Eric
I
rrgang
Ad
d
helpful
not
e
about
g
mxp
a
i
docker notebook s
e
rver
.
commit
|
commitdiff
|
tree
2019-06-19
M
.
Eric
Irr
g
ang
Up
d
ates
t
o gmxapi docker entr
y
poi
n
ts
.
commit
|
commitdiff
|
tree
2019-05-24
Paul
B
auer
F
i
x PQR formatting
commit
|
commitdiff
|
tree
2019-05-16
M
.
Eric Irrgang
Fix
ty
p
os regarding
G
MX_PHYSICAL_VALIDATION
C
Make va
r
iable
.
commit
|
commitdiff
|
tree
2019-04-10
M
.
Er
i
c Irrg
a
ng
Add
GROM
A
C
S
lib
r
a
r
y dependency
to gmxapi
p
ackage
.
commit
|
commitdiff
|
tree
2019-04-09
M
.
Eric I
r
rg
a
ng
In
t
roduce g
m
xapi o
p
erations an
d
b
a
s
ic
d
ata model
.
commit
|
commitdiff
|
tree
2019-04-08
M
.
Eric
I
rrgang
Rem
o
ve stale "T
O
DO"
.
commit
|
commitdiff
|
tree
2018-12-19
M
.
Eric Irrgang
Restrict number of OpenMP t
h
reads d
u
ri
n
g
testing
.
commit
|
commitdiff
|
tree
2018-11-19
Joe Jo
r
dan
fix
u
n
used
variable war
n
ing from
g
mxapi com
p
ilat
i
on
commit
|
commitdiff
|
tree
2018-11-16
M
.
Er
i
c Irrgan
g
Con
v
ert
u
nhelpful
assertion to better documentation
.
commit
|
commitdiff
|
tree
2018-11-16
M
.
E
r
ic I
r
r
g
ang
Remove
e
xt
r
ane
o
u
s CMa
k
e config
.
commit
|
commitdiff
|
tree
2018-11-01
M
.
Eric
I
r
rgan
g
A
d
d missing blam
e
f
or restraint
module files
.
commit
|
commitdiff
|
tree
2018-10-15
M
.
Eric Irrgang
Release notes for restraint modu
l
e
and gmx
a
p
i
.
commit
|
commitdiff
|
tree
2018-10-15
M
.
E
ric Irr
g
ang
Ign
o
re pyenv
co
n
fig
file
.
commit
|
commitdiff
|
tree
2018-10-12
M
.
Eric Irrgang
A
dd gmxapi
s
ession reso
u
rces
.
commit
|
commitdiff
|
tree
2018-10-12
M
.
Eric Irrgang
Enable res
t
r
a
in
t
s facilities
.
commit
|
commitdiff
|
tree
2018-10-12
M
.
Eric Irrgang
I
n
i
tialize
force vecto
r
in Pot
e
n
tialP
o
intData constructor
.
commit
|
commitdiff
|
tree
2018-10-11
M
.
Er
i
c Irrgan
g
Add gmxapi::W
o
rkflow
.
commit
|
commitdiff
|
tree
2018-09-25
M
.
E
r
ic Irrgang
Al
l
ow explicit re
s
et of simulatio
n
stop conditi
o
n
.
commit
|
commitdiff
|
tree
2018-09-10
M
.
Eric Irrgang
Rem
o
ve
c
ons
t
f
rom poi
n
ters in t_filenm
.
commit
|
commitdiff
|
tree
2017-08-30
M
.
Eric Irrg
a
ng
Declare
an input parameter const
commit
|
commitdiff
|
tree
2017-06-29
M
.
Eric Irr
g
ang
Mark
u
nmod
i
f
i
ed inpu
t
parameter const
commit
|
commitdiff
|
tree
2017-04-22
M
.
Eric Irr
g
ang
ignore
OS X Finder metada
t
a
commit
|
commitdiff
|
tree
2017-04-22
M
.
E
r
ic I
r
rgang
sort ignored file extens
i
ons
commit
|
commitdiff
|
tree
2017-04-22
M
.
Er
i
c
Ir
r
gan
g
ig
n
ore g+
+
prec
o
mpiler header
output
commit
|
commitdiff
|
tree