repo.or.cz
/
gromacs.git
/
search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
first
·
prev
·
next
Fix regressiontest download md5sum
2016-07-11
M
ark Abraham
Fix regr
e
ssion
t
es
t
do
w
nl
o
ad md5sum
commit
|
commitdiff
|
tree
2016-07-09
Mark
A
braham
Fir
s
t
2016
r
e
l
ease candidate
commit
|
commitdiff
|
tree
2016-07-08
Mark Abraham
Me
r
ge branch r
e
lease-5-1 into rel
e
ase-2016
commit
|
commitdiff
|
tree
2016-07-08
Mark Abrah
a
m
Simplify SIMD compiler
f
lag construction
commit
|
commitdiff
|
tree
2016-07-07
M
ark
Abraha
m
Move consistency
c
heck for n
u
mber
of
t
h
reads
commit
|
commitdiff
|
tree
2016-07-07
Mark Abrah
a
m
Fix build i
f
libcuda is found but nvcc is not
commit
|
commitdiff
|
tree
2016-07-04
Mark Abraham
Fixes for
P
ower7
b
ig-
e
ndian
commit
|
commitdiff
|
tree
2016-07-01
Mark Abr
a
ham
Fix
u
se
of _PO
S
I
X
_THREAD*
commit
|
commitdiff
|
tree
2016-06-30
Mark Abraham
M
erge bra
n
ch release-5-1 into release-20
1
6
commit
|
commitdiff
|
tree
2016-06-29
Mark
Abraham
Refactor sysconf checkin
g
commit
|
commitdiff
|
tree
2016-06-29
Mark Abraham
Work around glibc 2
.
23
w
ith CUDA
commit
|
commitdiff
|
tree
2016-06-28
M
a
r
k
Abraham
Update to include a
gcc
6
.
1 co
n
figuration
commit
|
commitdiff
|
tree
2016-06-28
Mark Abraham
Fix SIMD configuration management
commit
|
commitdiff
|
tree
2016-06-27
Mark Abraham
R
emoved
u
nn
e
cessary int
e
r
-simulation signalling
commit
|
commitdiff
|
tree
2016-06-27
Mar
k
Abr
a
ham
M
erge b
r
anch
r
elease
-
5
-1 into re
l
ease-
2
016
commit
|
commitdiff
|
tree
2016-06-23
Mark A
b
raham
Allow use of external
lmf
i
t
packa
g
e
commit
|
commitdiff
|
tree
2016-06-23
M
ark Abraham
P
revent use of mdrun -maxh -multi
commit
|
commitdiff
|
tree
2016-06-22
Mark A
b
raha
m
Fix configu
r
ation-time c
p
ui
n
f
o code
commit
|
commitdiff
|
tree
2016-06-22
Ma
r
k Abraham
Merge branch r
e
lea
s
e-5-1 i
n
to release-
2
016
commit
|
commitdiff
|
tree
2016-06-22
Ma
r
k
Abraham
Adjust
a
nd
d
ocumen
t
C++11 compiler
t
e
sts
commit
|
commitdiff
|
tree
2016-06-20
Mark Abraham
U
p
date
pre-subm
i
t
m
a
trix contents
commit
|
commitdiff
|
tree
2016-06-19
Mark Abra
h
am
Imp
r
ove docs
f
o
r
linking stdlibc++
n
eed
e
d by
i
cc
commit
|
commitdiff
|
tree
2016-06-17
Mark Abraham
M
e
r
ge
branch release-5-1 in
t
o relea
s
e-2016
commit
|
commitdiff
|
tree
2016-06-17
M
ark Abrah
a
m
Fix
mult
i
-sim + DD + simple distan
c
e res
t
raints
commit
|
commitdiff
|
tree
2016-06-10
Mark Abraham
Find
p
y
t
hon for docs buil
d
q
u
ietly
commit
|
commitdiff
|
tree
2016-06-08
Mark A
b
r
aham
Merge
b
ranch release
-
5-1 into release-2016
commit
|
commitdiff
|
tree
2016-06-07
Mark Abr
a
h
am
R
e
-
a
dd s
u
p
p
o
r
t for linki
n
g
ag
a
inst external Ti
n
y
X
M
L-2
commit
|
commitdiff
|
tree
2016-06-07
M
a
rk
A
braham
U
pdates
to document
a
tio
n
commit
|
commitdiff
|
tree
2016-06-02
Mark Abraham
F
ix compatibil
i
ty with ol
d
er
C
M
a
ke
commit
|
commitdiff
|
tree
2016-06-02
Mark Abraham
Make mor
e
CMake variables advanced
commit
|
commitdiff
|
tree
2016-06-02
Mark Abraham
Ignor
e
s
t
der
r
wh
e
n detecting SIMD and
b
uil
d
info
commit
|
commitdiff
|
tree
2016-05-31
Mark Abraham
F
i
x
r
eference to vmd
i
o
.
c to be vmdio
.
cpp
commit
|
commitdiff
|
tree
2016-05-31
Mark Abraham
Seco
n
d 201
6
b
eta release
commit
|
commitdiff
|
tree
2016-05-29
Mark Abraham
Simp
l
ified
a
nd
updat
e
d
O
penCL com
p
ilation
commit
|
commitdiff
|
tree
2016-05-27
Mark
A
braham
F
i
x reading o
f
bond
e
d tables
commit
|
commitdiff
|
tree
2016-05-26
Mark Abraham
New quote
commit
|
commitdiff
|
tree
2016-05-12
Mar
k
Abraham
Merge br
a
nch
r
elease-5-1 into releas
e
-
2
01
6
commit
|
commitdiff
|
tree
2016-05-12
Mark Abraham
G
R
OMACS 2016 beta1 release
commit
|
commitdiff
|
tree
2016-05-10
Mark
Abraham
Bu
m
p clang static
a
nalyzer to version 3
.
8
commit
|
commitdiff
|
tree
2016-05-10
Mar
k
A
b
r
a
h
a
m
Mino
r
update to s
p
hinx depen
d
en
c
y
commit
|
commitdiff
|
tree
2016-05-10
Ma
r
k Abraha
m
Facilita
t
e linking with l
i
b
c
x
x
commit
|
commitdiff
|
tree
2016-05-08
Mark A
b
r
a
ham
F
ixes fo
r
clang 3
.
7 on PowerPC
commit
|
commitdiff
|
tree
2016-05-08
Mark Abra
h
a
m
Fi
x
con
s
tant
s
,
units and c
o
nversion fa
c
t
ors
commit
|
commitdiff
|
tree
2016-04-27
Mark
Abraham
Merge branch release
-
5-1
commit
|
commitdiff
|
tree
2016-04-19
Mark Abraham
Re
p
la
c
e libxml2 with tinyxml2 for u
s
e in test
c
ode
commit
|
commitdiff
|
tree
2016-04-19
M
a
rk Abraham
F
ix p
a
rse_dig
i
ts_from_string
commit
|
commitdiff
|
tree
2016-04-19
Mark Abrah
a
m
Fix m
d
p label g
e
nerat
i
on
commit
|
commitdiff
|
tree
2016-04-18
Mar
k
Abraham
Reduce
c
ompilation
c
oup
l
i
n
g of SIMD module
commit
|
commitdiff
|
tree
2016-04-14
M
ark Abr
a
h
am
M
e
rge branch re
l
ease-5-
1
commit
|
commitdiff
|
tree
2016-04-01
Mark A
b
raham
Revert to treati
n
g -1 as "gener
a
te a s
e
ed"
in
.
mdp
commit
|
commitdiff
|
tree
2016-03-31
Mark Abraham
A
d
d test a
n
d i
m
proved docs for
c
u
s
tom chec
k
Sequence
commit
|
commitdiff
|
tree
2016-03-30
M
a
rk Abraham
Clean up
v
site code
commit
|
commitdiff
|
tree
2016-03-19
M
a
rk Abrah
a
m
Ad
d
more const correctn
e
s
s
commit
|
commitdiff
|
tree
2016-03-19
Mark Abraham
Fix warn
i
ng
f
r
o
m
GCC 6
commit
|
commitdiff
|
tree
2016-03-19
Mark
A
b
raha
m
Improved s
o
me md
r
un int
e
gration tests
commit
|
commitdiff
|
tree
2016-03-18
Mark
A
b
r
a
h
am
Warn about Op
e
n
M
P
I 1
.
8
.
6
commit
|
commitdiff
|
tree
2016-03-18
Mar
k
Abrah
a
m
Fix typo
in Fourier
d
i
hedral
e
q
uation
commit
|
commitdiff
|
tree
2016-03-15
Mark Abrah
a
m
M
erg
e
branc
h
r
elease-5
-
0 into release-5-1
commit
|
commitdiff
|
tree
2016-03-12
M
a
rk Abrah
a
m
Updat
e
u
s
e of isnan in lin
e
aralgebr
a
commit
|
commitdiff
|
tree
2016-03-12
M
a
rk
A
brah
a
m
Fi
n
d
hwlo
c
q
uietly if it's
a
l
ready been foun
d
commit
|
commitdiff
|
tree
2016-03-11
Mark Ab
r
aham
Add inf
r
ast
r
ucture f
o
r tes
t
s to compare mdruns
commit
|
commitdiff
|
tree
2016-03-11
Ma
r
k
Ab
r
aha
m
M
erge bra
n
ch release-5-0 in
t
o rel
e
ase-
5
-1
commit
|
commitdiff
|
tree
2016-03-10
Mark Abraham
R
e
q
u
i
re
2
0
15 ver
s
i
o
n for MSVC
commit
|
commitdiff
|
tree
2016-03-05
M
a
r
k Abraham
Ad
d
S
E
T
T
L
E
unit
t
est
s
commit
|
commitdiff
|
tree
2016-02-26
Mark Abraham
Se
p
a
rated
t
est o
f
CDATA end tag hand
l
i
ng
f
rom others
commit
|
commitdiff
|
tree
2016-02-23
Ma
r
k Abraham
R
e
plac
e
cp
p
check suppress
i
on in
checkpoint code
commit
|
commitdiff
|
tree
2016-02-22
M
a
rk
A
b
r
a
ham
Move init of specializ
e
d
dynamic
a
l a
l
gorithms to do_md
commit
|
commitdiff
|
tree
2016-02-21
M
a
rk A
b
raham
S
e
par
a
te
t
a
ble co
n
struction
commit
|
commitdiff
|
tree
2016-02-19
Mark
Abrah
a
m
Merge branc
h
r
elease-
5
-1
commit
|
commitdiff
|
tree
2016-02-19
Mark Abraham
Make both ftp and http links for source download
commit
|
commitdiff
|
tree
2016-02-18
Mark
Abra
h
am
Upd
a
ted re
f
ere
n
ce ma
n
ual text about PME tuning
commit
|
commitdiff
|
tree
2016-02-16
Mark Abraham
Merge branch release-5-0 i
n
to
r
eleas
e
-5-1
commit
|
commitdiff
|
tree
2016-02-14
Mark Abraham
Re-generate
d
eps for
fi
g
u
r
e 4
.
8
commit
|
commitdiff
|
tree
2016-02-10
M
ark Abraham
R
e-remove *_stochd
_
stat
e
function decl
a
rations
commit
|
commitdiff
|
tree
2016-02-10
Mark
A
braham
Improved upd
a
te_coords han
d
ling of
xprime
commit
|
commitdiff
|
tree
2016-02-10
Ma
r
k Abraham
Fix i
s
s
u
es to update cppche
c
k
supp
o
rt
t
o 1
.
7
2
commit
|
commitdiff
|
tree
2016-02-08
Mark Abraha
m
Merge br
a
nch release-5-0 into re
l
e
ase-5-1
commit
|
commitdiff
|
tree
2016-02-06
M
a
r
k
Abraham
Merge bran
c
h rele
a
se-5-1
commit
|
commitdiff
|
tree
2016-02-03
Mark Abraham
Bumped patch
number to prepare
f
or future 5
.
1
.
3 release
commit
|
commitdiff
|
tree
2016-02-03
Mark Abra
h
a
m
Versi
o
n 5
.
1
.
2
commit
|
commitdiff
|
tree
2016-02-03
Mark Abraham
F
i
x
gr
o
mpp not warning when
.
m
d
p values have wrong
.
.
.
commit
|
commitdiff
|
tree
2016-02-03
Ma
r
k Abraham
Merge rel
e
ase-5-0 i
n
to release
-
5-1
commit
|
commitdiff
|
tree
2016-02-03
Mark Abr
a
ham
Fix dEkin
/
dl handling with multiple
r
a
nks
commit
|
commitdiff
|
tree
2016-01-28
Mark A
b
r
aha
m
Merge b
r
anch release-5-
1
commit
|
commitdiff
|
tree
2016-01-28
Mark Abra
h
am
Fix us
e
of __A
P
PLE__ in O
p
enCL code
commit
|
commitdiff
|
tree
2016-01-28
M
a
rk Abraham
Ad
d
Ope
n
CL
s
ource file
types
t
o cop
y
right checke
r
commit
|
commitdiff
|
tree
2016-01-28
Mark Abraham
Avoid FP exception
commit
|
commitdiff
|
tree
2016-01-27
Mark Abraham
Merge b
r
anch releas
e
-5-1
commit
|
commitdiff
|
tree
2016-01-27
Mark Abr
a
ham
R
emove
b
NotLastFrame
commit
|
commitdiff
|
tree
2016-01-27
Ma
r
k Abraham
A
d
d sugg
e
stions fo
r
updating binut
i
ls
commit
|
commitdiff
|
tree
2016-01-26
Mark Abraha
m
Fix defau
l
t fo
r
GM
X
_USE_NVML
commit
|
commitdiff
|
tree
2016-01-25
Mark A
b
raham
Merge branch
relea
s
e-5-
1
commit
|
commitdiff
|
tree
2016-01-24
Mark Abraham
Fix duplic
a
te LaTeX
e
quation lab
e
l
commit
|
commitdiff
|
tree
2016-01-24
Mark
A
bra
h
am
Update refe
r
e
n
ces to HT
M
L a
n
d
online d
o
cum
e
ntation
commit
|
commitdiff
|
tree
2016-01-14
Mark Abraham
Permit customized
testing of grompp and mdrun
commit
|
commitdiff
|
tree
2016-01-13
Mark Abr
a
ha
m
A
l
l
owed NVML
s
upport to b
e
toggle
d
commit
|
commitdiff
|
tree
2016-01-12
Mark Abraham
Mer
g
e br
a
nch release-5-0
i
nto release-5-1
commit
|
commitdiff
|
tree
2016-01-11
Mark Abraham
Improv
e
d
u
pdate_coo
r
ds
commit
|
commitdiff
|
tree
2016-01-08
Mark Abraha
m
Improve tpr header
v
ers
i
on h
a
ndling
commit
|
commitdiff
|
tree
2016-01-08
Mark Abraha
m
Mer
g
e branch re
l
eas
e
-5-1
commit
|
commitdiff
|
tree
next