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Update clang static analyzer slave to use version 4
2017-05-15
M
a
rk Abraha
m
Update
c
lang static
a
nalyzer s
l
ave
to u
s
e versi
o
n 4
commit
|
commitdiff
|
tree
2017-05-14
Mark Abraham
Updat
e
cl
a
ng-4
commit
|
commitdiff
|
tree
2017-05-09
Mark Abr
a
ham
Merg
e
branch release-20
1
6
commit
|
commitdiff
|
tree
2017-05-09
Mark Abraham
C
l
e
a
ned up memory
usage in gmx traj
a
nd trjconv
commit
|
commitdiff
|
tree
2017-04-22
Mark
A
b
r
a
ham
Clean up memory us
a
ge with oenv
and xvg w
r
iting
commit
|
commitdiff
|
tree
2017-04-17
Mark
A
braham
M
i
nor change to
GPU compatib
i
lity r
e
por
t
ing
ha
n
dlin
g
commit
|
commitdiff
|
tree
2017-04-17
Mark
Ab
r
aham
Propose
a
post-submit
m
a
t
rix
commit
|
commitdiff
|
tree
2017-04-03
M
a
rk
Abraham
Remove do_pbc
_
first
commit
|
commitdiff
|
tree
2017-03-31
Mark Abrah
a
m
M
e
rge branch release-20
1
6
commit
|
commitdiff
|
tree
2017-03-29
Mark Abraha
m
Fix parameter descript
i
on for dih
e
dra
l
_res
t
raints
commit
|
commitdiff
|
tree
2017-03-22
Mark Abraham
Add
secti
o
n
to
us
e
r guide for managing simulations
commit
|
commitdiff
|
tree
2017-03-19
M
a
rk
A
bra
h
a
m
Fix string ha
n
dl
i
ng
f
or gcc 7
commit
|
commitdiff
|
tree
2017-03-14
M
a
r
k
Abraham
Merge br
a
n
ch
r
e
leas
e
-2016
commit
|
commitdiff
|
tree
2017-03-14
Mark
A
braham
Bumped v
e
r
s
io
n
t
o pr
e
pa
r
e
for nex
t
patch release
commit
|
commitdiff
|
tree
2017-03-13
M
ark Abraham
Vers
i
on 2016
.
3
commit
|
commitdiff
|
tree
2017-03-13
M
ark A
b
raham
M
o
dernize
write_inpfile
commit
|
commitdiff
|
tree
2017-03-13
Mark Abraham
Modern
i
ze re
a
d_inpf
i
le
commit
|
commitdiff
|
tree
2017-03-13
Mark Abraham
Tests for grompp -f -po
commit
|
commitdiff
|
tree
2017-03-09
Mark Abraham
Re
f
a
ctor GPU selection
ha
n
dling
commit
|
commitdiff
|
tree
2017-03-07
M
ark Abraham
Fix mino
r
i
ssues in gm
x
traj -av -af
commit
|
commitdiff
|
tree
2017-03-04
Mark
A
braham
Fixes
f
or xl compilers
13
.
1
.
5 o
n
Power
8
commit
|
commitdiff
|
tree
2017-02-20
Mark Abraha
m
A
d
d tests for old gmx
e
nergy functiona
l
it
y
commit
|
commitdiff
|
tree
2017-02-17
Mark Abraham
Use gmx::Mute
x
and gmx
:
:lock_guard to fix some issues
commit
|
commitdiff
|
tree
2017-02-15
Mark Abraha
m
Merg
e
branch release-5-1 into release-2
0
16
commit
|
commitdiff
|
tree
2017-02-14
Mark Abraha
m
Fix
handli
n
g
of prev
i
ous virials
commit
|
commitdiff
|
tree
2017-02-14
M
ark Abraham
Reduce
compilatio
n
cou
p
ling
commit
|
commitdiff
|
tree
2017-02-10
Mar
k
Abr
a
ham
Corrected output of gmx d
o
_
dssp -sc
commit
|
commitdiff
|
tree
2017-02-09
M
ark
A
braham
Complet
e
the
r
emoval of stateful RNG
commit
|
commitdiff
|
tree
2017-02-09
Mark Abraham
I
m
pr
o
ved state_change_natoms and
u
sed
it more
commit
|
commitdiff
|
tree
2017-02-09
Mark
A
braham
Remove
EST_DISTR from state
.
h
commit
|
commitdiff
|
tree
2017-02-09
Mark Abrah
a
m
Enhance warninp
commit
|
commitdiff
|
tree
2017-02-08
Mark Abraham
Extend serialization to gmx_int64_t
commit
|
commitdiff
|
tree
2017-02-08
Mark Ab
r
a
ham
Re
m
ove docs for unimpl
e
mented t
r
jconv -cl
u
sterce
n
ter
commit
|
commitdiff
|
tree
2017-02-08
Mark Abrah
a
m
Create applied-forces module g
r
oup
commit
|
commitdiff
|
tree
2017-02-08
Mark Abraham
Give MDModu
l
es
r
espo
n
sibility for option handling
commit
|
commitdiff
|
tree
2017-02-07
Mark Abraham
Merg
e
branch release-2016
commit
|
commitdiff
|
tree
2017-02-07
Mark Abra
h
am
Bumped version to prepare for next patch re
l
ea
s
e
commit
|
commitdiff
|
tree
2017-02-07
M
a
rk Abra
h
am
Intro
d
u
c
ed system preparation se
c
t
i
on to u
s
er guide
commit
|
commitdiff
|
tree
2017-02-07
M
ark Abraham
V
ersion 201
6
.
2
commit
|
commitdiff
|
tree
2017-02-05
Ma
r
k
A
braha
m
Merge branch release-5-1 i
n
to releas
e
-2016
commit
|
commitdiff
|
tree
2017-02-03
M
ark Abraham
Re
m
ove
t
yped
e
f struct in some mdt
y
p
e
s fil
e
s
commit
|
commitdiff
|
tree
2017-02-02
Mar
k
Abraham
Clari
f
y
u
s
e
of ta
u
-
p and
pcoupltype
commit
|
commitdiff
|
tree
2017-01-31
Ma
r
k Abra
h
a
m
Merge
b
r
anch release-5
-
1 into release-2016
commit
|
commitdiff
|
tree
2017-01-30
Mark Abraham
Fix multi
-
domain reruns
commit
|
commitdiff
|
tree
2017-01-30
Mark Abraha
m
Don't pr
i
nt i
n
valid performanc
e
da
t
a
commit
|
commitdiff
|
tree
2017-01-23
Mark Abraham
Stopped header file
s
including state
.
h
commit
|
commitdiff
|
tree
2017-01-22
Ma
r
k Abraha
m
Fixed
g
m
x rmsf -q -oq
.
commit
|
commitdiff
|
tree
2017-01-21
Mark Abraham
Removed in
i
t_state
commit
|
commitdiff
|
tree
2017-01-20
M
a
rk Abraham
Initialize
G
M
X
_
*_LIBRARIES cmak
e
varia
b
l
es earlier
commit
|
commitdiff
|
tree
2017-01-14
M
ark Abraha
m
M
e
r
ge
b
ranch release-2
0
1
6
commit
|
commitdiff
|
tree
2017-01-06
Mark Abraham
Docum
e
nt ISeriali
z
er class
commit
|
commitdiff
|
tree
2017-01-04
Ma
r
k
Abraham
Stop tryi
n
g to use objd
u
mp --reloc on Mac
commit
|
commitdiff
|
tree
2017-01-04
Mark Abraham
Fix
d
ocumentation of OptionsVisitor
commit
|
commitdiff
|
tree
2017-01-03
Ma
r
k
A
b
r
ah
a
m
Merge branch rel
e
ase-5-1 into release-201
6
commit
|
commitdiff
|
tree
2016-12-20
Mark Abraham
Correcte
d
d
o
c
u
mentation
abou
t
e
igen
v
al
u
e h
a
ndling
commit
|
commitdiff
|
tree
2016-12-20
Mark Abrah
a
m
Improve build system
for plugin
s
u
pport
commit
|
commitdiff
|
tree
2016-12-20
M
a
rk
Abraham
Sanitize some include headers
commit
|
commitdiff
|
tree
2016-12-20
Mark A
b
raham
Mer
g
e
branc
h
r
e
l
e
ase-2
0
16
commit
|
commitdiff
|
tree
2016-12-15
Ma
r
k Abraham
Rem
o
ved support fo
r
m
u
ltiple entries in mdp files
commit
|
commitdiff
|
tree
2016-12-15
Mark
Abraham
Handle wa
r
ninp co
r
re
c
tl
y
in xpm2ps
a
nd membed
commit
|
commitdiff
|
tree
2016-12-14
Mar
k
Abraham
Fix misleading parallelization docs for g
m
x wham
commit
|
commitdiff
|
tree
2016-12-09
Mark Abraham
Fix
logic of TRR
r
eading
commit
|
commitdiff
|
tree
2016-12-09
Mark
A
braham
Remove nxfr
a
me from t_trxstatus
commit
|
commitdiff
|
tree
2016-12-08
Mar
k
Abraham
Con
s
ol
i
date files suppo
r
ting TNG fil
e
I/O
commit
|
commitdiff
|
tree
2016-12-07
Mark Abr
a
ham
Merge branch r
e
lease-2016
commit
|
commitdiff
|
tree
2016-12-07
Mark Abra
h
am
Fix
memor
y
handling in gmx dump of TNG files
commit
|
commitdiff
|
tree
2016-12-05
Ma
r
k Abrah
a
m
Rem
o
ve undue narrowing of integer i
n
TNG r
e
ading
commit
|
commitdiff
|
tree
2016-12-01
Mark Abraha
m
Add INSTALL-dev t
o
aid pe
o
ple doing
u
nusual buil
d
s
commit
|
commitdiff
|
tree
2016-12-01
Mark A
b
r
a
h
a
m
F
ix minor trjconv bug
commit
|
commitdiff
|
tree
2016-11-23
Mark Abraham
St
o
p includ
i
ng
t
ng_i
o
_
fwd
.
h
commit
|
commitdiff
|
tree
2016-11-16
Mark
Abraham
Enhanced ArrayRef
commit
|
commitdiff
|
tree
2016-11-16
Mark A
b
raham
Create
d
pad
d
edvec
t
or
.
h
commit
|
commitdiff
|
tree
2016-11-16
Mark Abraham
R
emove unimplemented gmx trjcat -v
e
l
commit
|
commitdiff
|
tree
2016-10-31
Mark Abraham
M
e
rg
e
branch
r
e
l
e
ase-2016
commit
|
commitdiff
|
tree
2016-10-31
Mark
Abrah
a
m
Merge branch release-201
6
commit
|
commitdiff
|
tree
2016-10-28
Mark Abraham
Bu
m
ped versio
n
t
o
prepare for next
p
a
tch release
commit
|
commitdiff
|
tree
2016-10-28
Mar
k
Ab
r
aham
Version
2016
.
1
commit
|
commitdiff
|
tree
2016-10-21
Mark
A
braham
Up
d
ate install
guide
commit
|
commitdiff
|
tree
2016-10-21
Mark Abraham
Up
d
a
t
e
c
ppcheck support to
1
.
7
6
.
1
commit
|
commitdiff
|
tree
2016-10-19
Mark Abr
a
ham
Up
g
r
ade
c
over
a
ge matri
x
.
commit
|
commitdiff
|
tree
2016-10-18
M
ark Abraham
Fix SIMD suggestion for
V
MX
commit
|
commitdiff
|
tree
2016-10-12
Mark
A
braham
M
ake regr
e
ssiontests updater
build wor
k
f
or master
.
.
.
commit
|
commitdiff
|
tree
2016-10-11
Mark A
b
ra
h
am
Update f
o
r FF
T
W
3
.
3
.
5
commit
|
commitdiff
|
tree
2016-10-10
Mark
Abraham
Merge "Merge bra
n
ch release-
2
01
6
"
commit
|
commitdiff
|
tree
2016-10-09
Mark Abrah
a
m
Merge branc
h
releas
e
-
2
016
commit
|
commitdiff
|
tree
2016-10-07
M
ark Abr
a
h
am
Add script fo
r
J
e
n
kin
s
regressionte
s
t updat
e
job
commit
|
commitdiff
|
tree
2016-10-03
Mark Abraham
Merge branch rele
a
se-5-1 into release-20
1
6
commit
|
commitdiff
|
tree
2016-10-03
Mark Abraham
Replace
use of depr
e
cated readdir_r
commit
|
commitdiff
|
tree
2016-09-12
Mark Abraham
Preliminary clean up of NVML
c
ode
commit
|
commitdiff
|
tree
2016-09-08
M
a
rk Abraham
Merge bran
c
h relea
s
e-5
-
1 into release-2
0
1
6
commit
|
commitdiff
|
tree
2016-09-08
Mark Abra
h
am
Bum
p
e
d patch number to prepare for
future 5
.
1
.
5 release
commit
|
commitdiff
|
tree
2016-09-07
Mark Abraham
Versi
o
n
5
.
1
.
4
commit
|
commitdiff
|
tree
2016-09-07
M
a
rk Abrah
a
m
Re
m
oved H
I
S
1 from
o
pls
a
a and char
m
m definitions
commit
|
commitdiff
|
tree
2016-09-07
Mark A
b
raham
Fix LY
N
charges in amber03
commit
|
commitdiff
|
tree
2016-09-07
M
ark Abraham
Fix amber03 HIP charges
commit
|
commitdiff
|
tree
2016-09-06
Mark Abraham
Work a
r
o
u
n
d glibc
2
.
23 w
i
t
h
CUDA
commit
|
commitdiff
|
tree
2016-08-27
Mark A
b
raham
S
t
op using gmx_f
a
t
al i
n
grompp
commit
|
commitdiff
|
tree
2016-08-24
Mark Abraham
Remove hacks for outdated Blu
e
G
ene support
commit
|
commitdiff
|
tree
2016-08-15
Mark Abraham
Merge
branch
r
e
lease
-
2016
commit
|
commitdiff
|
tree
2016-08-15
Mark Abraham
F
ixes for
B
G
/
Q platform
f
iles
a
n
d ins
t
a
ll gu
i
de
commit
|
commitdiff
|
tree
next