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Fix pinned memory status checker tests
2017-11-21
Al
e
ksei I
u
pinov
Fix pinned memor
y
status checker tests
commit
|
commitdiff
|
tree
2017-11-18
Aleksei Iupin
o
v
A
synchronous CUD
A
trans
f
e
rs are asserted
t
o a
l
w
a
ys
.
.
.
commit
|
commitdiff
|
tree
2017-11-17
Aleksei Iu
p
inov
Make g
p
u_utils-test
build with G
M
X_CLANG
_
CU
D
A
commit
|
commitdiff
|
tree
2017-11-15
A
l
eksei
Iupi
n
o
v
Ren
a
me and expose "generic" GPU memory transfer functions
commit
|
commitdiff
|
tree
2017-11-09
A
leksei Iupinov
Rename synchronous GPU
tr
a
nsfer functions to m
a
tch
.
.
.
commit
|
commitdiff
|
tree
2017-11-02
Aleksei Iu
p
inov
Replace math
.
h by cmath
includes in cpp file
s
commit
|
commitdiff
|
tree
2017-11-01
Aleksei Iupinov
Rem
o
ve unused PME GPU declarations
commit
|
commitdiff
|
tree
2017-11-01
Aleksei Iupinov
Move pme_gpu_finish_comp
u
tation() doc
u
mentation to
.
.
.
commit
|
commitdiff
|
tree
2017-11-01
Ale
k
sei Iupinov
F
i
x erroneous PME G
P
U "s
t
ep
"
nam
i
ngs
commit
|
commitdiff
|
tree
2017-11-01
Alek
s
ei Iupi
n
ov
Simp
l
i
fy
P
ME GPU synchroni
z
ation code
commit
|
commitdiff
|
tree
2017-10-31
Al
e
ksei Iupinov
Re
u
se epbc
X
Y l
o
gic
commit
|
commitdiff
|
tree
2017-10-30
Alek
s
ei Iupinov
Fi
x
re
f
ere
n
ce
mode build unused
fu
n
ct
i
o
n warni
n
g
s
commit
|
commitdiff
|
tree
2017-10-30
Aleksei Iupinov
B
r
ing
PME GPU/CUDA in
t
ernal str
u
cture names to CamelCase
commit
|
commitdiff
|
tree
2017-10-30
Aleksei Iupinov
Us
e
new/delete for g
m
x
_
pme
_
t
commit
|
commitdiff
|
tree
2017-10-30
A
leksei Iupinov
Simplify PME data handling
i
n runner
commit
|
commitdiff
|
tree
2017-10-29
Alek
s
e
i
Iupin
o
v
Make PME tuning logic m
o
re
readable
commit
|
commitdiff
|
tree
2017-10-27
Aleksei Iu
p
ino
v
Remove unused PME
g
r
id
d
ump debug functions
commit
|
commitdiff
|
tree
2017-10-27
Alek
s
ei
I
upinov
Re
p
lace a few a
s
serts with GMX_ASSERT's
commit
|
commitdiff
|
tree
2017-10-27
Aleksei Iupinov
Remove defunct PME
i
n
i
tialization error code return
commit
|
commitdiff
|
tree
2017-10-24
Aleksei Iupinov
Remove duplicate/outdated functio
n
declaration
commit
|
commitdiff
|
tree
2017-10-24
Aleksei
I
upinov
Mov
e
c
ommr
e
c dut
y
c
hecking into sim
p
le getters
commit
|
commitdiff
|
tree
2017-10-23
A
l
eksei Iupinov
Cor
r
ect the pa
g
e allocator
d
escri
p
t
ion
commit
|
commitdiff
|
tree
2017-10-22
Aleksei Iupinov
Change PME
G
PU gather r
e
duction argument from
b
ool
e
an
.
.
.
commit
|
commitdiff
|
tree
2017-10-21
Al
e
ksei Iu
p
i
n
o
v
Add
calls to th
e
PME GPU stages
commit
|
commitdiff
|
tree
2017-10-13
A
le
k
sei Iupinov
Relax PM
E
spl
i
ne
c
omputati
o
n tolerance in dou
b
le
p
recision
.
.
.
commit
|
commitdiff
|
tree
2017-10-12
Alek
s
ei I
u
pinov
R
e
move
u
seles
s
exter
n
CUDA text
u
re refe
r
ence declarations
.
.
.
commit
|
commitdiff
|
tree
2017-10-12
Aleks
e
i Iupinov
Revert "Dro
p
NB_
f
rom G
M
X_CUDA_N
B
_SIN
G
L
E
_COMPILATION_UN
I
T
.
.
.
commit
|
commitdiff
|
tree
2017-10-11
Ale
k
sei Iupinov
Fix cl
a
ng war
n
i
n
gs for PM
E
CUDA kernels
commit
|
commitdiff
|
tree
2017-10-11
Ale
k
sei
I
upinov
Relax P
M
E solving t
e
st complex grid
t
olerance
commit
|
commitdiff
|
tree
2017-10-11
Al
e
ksei
I
u
p
inov
CUD
A
9
/
V
ol
t
a support for PME
commit
|
commitdiff
|
tree
2017-10-11
Aleks
e
i
Iupin
o
v
P
M
E sol
v
ing -
C
UDA ker
n
e
l
+ unit tests
commit
|
commitdiff
|
tree
2017-10-11
Aleksei
Iu
p
inov
PME
f
orce gathering - CUDA ker
n
el + u
n
it
t
ests
commit
|
commitdiff
|
tree
2017-10-11
Aleksei Iupinov
Drop NB_ from G
M
X_CUDA_N
B
_SINGLE_COMPILATION_UNI
T
cmake
.
.
.
commit
|
commitdiff
|
tree
2017-10-11
Aleksei Iupinov
PME spl
i
ne+spread CU
D
A kernel and un
i
t tests
commit
|
commitdiff
|
tree
2017-10-09
Alekse
i
Iupinov
Remove
s
o
me unn
e
cessa
r
y includes from PME
commit
|
commitdiff
|
tree
2017-10-09
Al
e
ksei
I
u
pinov
P
ME GPU/CUDA dat
a
framew
o
rk
.
commit
|
commitdiff
|
tree
2017-10-06
A
leksei Iupinov
Add timing accumulation capability into G
p
uRegionTimer
commit
|
commitdiff
|
tree
2017-10-04
Aleks
e
i I
u
p
i
nov
Remove GPU timing functi
o
ns
s
uperseded by
G
puRe
g
ionTimer
commit
|
commitdiff
|
tree
2017-10-04
Aleksei Iu
p
inov
Add
G
puRegionTime
r
class
commit
|
commitdiff
|
tree
2017-10-03
Aleksei Iup
i
n
o
v
Bring CUDA te
x
tur
e
getters
documentation up-to-date
commit
|
commitdiff
|
tree
2017-10-03
Aleksei
Iupinov
Tem
p
l
ate/move CUDA t
e
xt
u
re c
l
e
anu
p
code from
NB CUDA
.
.
.
commit
|
commitdiff
|
tree
2017-10-03
Alekse
i
Iu
p
inov
Add WinAP
I
p
a
ge s
i
ze query for allocator purposes
commit
|
commitdiff
|
tree
2017-09-26
Al
e
ksei
Iup
i
n
o
v
Move CUDA texture set
u
p code f
r
o
m
NB
C
UDA m
o
dule to
.
.
.
commit
|
commitdiff
|
tree
2017-09-22
A
l
eksei I
u
pinov
Template
t
he C
U
DA
t
extur
e
setup cod
e
on raw value type T
commit
|
commitdiff
|
tree
2017-09-21
Aleks
e
i
I
u
p
inov
Eliminate unus
e
d Coulo
m
b corre
c
tion tabl
e
size coulomb_tab
_
si
z
e
commit
|
commitdiff
|
tree
2017-09-21
A
l
eksei I
u
p
ino
v
Eli
m
inate duplicate
CUDA text
u
r
e
s
e
t
up c
o
d
e
commit
|
commitdiff
|
tree
2017-09-18
Al
e
ksei
I
upinov
Ski
p
GPU
r
e
al
l
o
c
ation of an empty non-lo
c
al
p
airlist
commit
|
commitdiff
|
tree
2017-09-14
Aleks
e
i Iupinov
F
i
x non-S
I
MD build failing
commit
|
commitdiff
|
tree
2017-09-12
Aleksei
Iupinov
Preve
n
t
r
efe
r
ence XML reader segfault on n
u
llp
t
r error
.
.
.
commit
|
commitdiff
|
tree
2017-09-04
Aleksei Iupi
n
ov
Merge "Me
r
ge branch release-5-1
i
nto release-2016
"
.
.
.
commit
|
commitdiff
|
tree
2017-08-31
Aleksei
I
up
i
nov
Bring
bac
k
s
p
ace lost
i
n co
m
mit e43e83bf
commit
|
commitdiff
|
tree
2017-08-29
A
l
eks
e
i I
u
pinov
Rem
o
ve leftover
f
unction declaration
commit
|
commitdiff
|
tree
2017-08-29
Aleksei Iupino
v
Fi
x
typo
commit
|
commitdiff
|
tree
2017-08-29
A
l
e
kse
i
Iupinov
Allow passin
g
op
t
ional width
a
r
g
ument into CUDA shuffle
.
.
.
commit
|
commitdiff
|
tree
2017-08-29
A
l
eksei Iupinov
Adjust PME LJ
s
o
l
ver test
i
npu
t
coefficient
commit
|
commitdiff
|
tree
2017-08-22
Aleksei Iupin
o
v
Separate PME spread and gather wallcycle counters
commit
|
commitdiff
|
tree
2017-08-21
A
l
eksei Iu
p
inov
PME solving tests
commit
|
commitdiff
|
tree
2017-08-17
Aleksei Iu
p
inov
Merge "
M
erge
branch release-5-1
into rel
e
a
s
e-20
1
6"
.
.
.
commit
|
commitdiff
|
tree
2017-06-30
A
leksei Iupino
v
Remove
o
utda
t
ed cmake nvcc
logic
commit
|
commitdiff
|
tree
2017-06-12
Alek
s
ei Iup
i
nov
St
o
re a physical node comm
u
nicator in t_commrec
commit
|
commitdiff
|
tree
2017-03-17
Al
e
ksei Iupinov
Fix dere
f
e
rencing nullptr in PME solve work destructor
commit
|
commitdiff
|
tree
2017-03-03
Aleksei Iupinov
Remove outdated CUDA version
c
heck
commit
|
commitdiff
|
tree
2017-02-21
Aleksei Iupinov
Remo
v
e u
n
used
f
unction cu
_
syn
c
hstream_atda
t
()
commit
|
commitdiff
|
tree
2017-02-09
Al
e
ksei Iupinov
Add initialization
to
d
vdl
a
mbda in
b
onded forces tests
commit
|
commitdiff
|
tree
2017-02-09
Aleksei Iup
i
nov
F
i
x typo (Diheda
r
l -> Dihedral)
commit
|
commitdiff
|
tree
2017-02-08
Alekse
i
Iupinov
P
M
E force g
a
t
h
ering t
e
sts
commit
|
commitdiff
|
tree
2017-02-08
A
l
eksei Iu
p
inov
Fix
inva
l
id t
r
i
c
linic box in the PM
E
test
d
a
ta
commit
|
commitdiff
|
tree
2017-01-24
Aleksei Iu
p
inov
PME spl
i
n
e
computation and charge spreading te
s
ts
commit
|
commitdiff
|
tree
2017-01-24
Aleksei Iu
p
in
o
v
Add const quali
f
ier
to
s
ome PME
sp
r
ead arguments
commit
|
commitdiff
|
tree
2017-01-19
A
l
eksei
Iupinov
Simplify
g
mx_cou
n
t_gpu_dev_uni
q
ue()
commit
|
commitdiff
|
tree
2017-01-19
Aleksei Iupino
v
PME B-Spline moduli c
o
m
p
ut
a
tion unit test
commit
|
commitdiff
|
tree
2017-01-05
A
l
eksei Iupinov
Fi
x
compi
l
ation
w
ith CMAKE_CXX
_
FLAGS="-Wall -We
r
ror"
commit
|
commitdiff
|
tree
2016-12-22
Aleksei Iupi
n
ov
Re
m
o
v
e unuse
d
mem
b
er threa
d
_one from the PME splin
e
.
.
.
commit
|
commitdiff
|
tree
2016-12-05
A
leksei Iupino
v
Stop includin
g
paral
l
el_3d
f
ft
.
h in
h
eaders
commit
|
commitdiff
|
tree
2016-12-01
Aleksei Iu
p
inov
Move GPU
a
ssignment fun
c
tions into a s
e
parat
e
f
i
le
commit
|
commitdiff
|
tree
2016-11-21
Aleksei Iupinov
Move ha
r
d
c
oded PME grid indexing const
a
n
t
s
i
nto header
commit
|
commitdiff
|
tree
2016-11-01
Aleksei Iu
p
inov
Remov
e
imatr
i
x t
y
pe
and related un
u
sed/erroneou
s
co
d
e
commit
|
commitdiff
|
tree
2016-10-24
Aleksei
I
up
i
nov
Tre
a
t CUDA files
a
s
C
++ du
r
ing
cppche
c
k
commit
|
commitdiff
|
tree
2016-10-10
A
lek
s
ei Iu
p
inov
Fix trivial PME memo
r
y lea
k
s
commit
|
commitdiff
|
tree
2016-09-15
Aleksei Iupinov
Move
th
e
PME Ewald coefficients to the PME stru
c
ture
commit
|
commitdiff
|
tree
2016-09-10
Alekse
i
Iupin
o
v
Fix PME data des
t
ructor not be
i
ng called
commit
|
commitdiff
|
tree