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Make some doxygen errors more clear
2020-03-18
Artem Zhmurov
Make some do
x
ygen errors
more clea
r
commit
|
commitdiff
|
tree
2020-03-13
Ma
r
k Abraham
Require padded
a
tom data for P
M
E
GP
U
commit
|
commitdiff
|
tree
2020-03-11
Sz
i
lárd P
á
ll
Reorganize dipole
c
alculat
i
on in do_
f
orce
commit
|
commitdiff
|
tree
2020-03-11
Artem Zhmurov
Fix the post-s
u
bmit failures
commit
|
commitdiff
|
tree
2020-03-11
Christi
a
n
B
lau
Am
e
nd optional documentation
commit
|
commitdiff
|
tree
2020-03-09
Mark
Abraham
Cons
o
l
id
a
te PME
G
PU splin
e
in
f
ras
t
ructu
r
e
commit
|
commitdiff
|
tree
2020-03-05
Berk Hess
A
dd
Int
e
ractionDe
f
in
i
tions
commit
|
commitdiff
|
tree
2020-03-04
Magn
u
s Lundborg
Separate
A
WH
parameter reading and ch
e
cki
n
g
commit
|
commitdiff
|
tree
2020-03-03
Artem Zhmurov
M
o
ve the Pm
e
PPCo
m
m
G
pu initialization from
forcere
c
.
.
.
commit
|
commitdiff
|
tree
2020-03-02
Paul Bauer
Add Cuda bui
l
d to gitla
b
CI
commit
|
commitdiff
|
tree
2020-02-25
Arte
m
Zhmurov
F
i
x
t
h
e R
V
ec to float3 co
n
v
e
rsion test
commit
|
commitdiff
|
tree
2020-02-22
David van der Spoel
F
i
xed bug in gmx di
s
re
d
ue
to inc
o
nsistency i
n
input
.
commit
|
commitdiff
|
tree
2020-02-22
Artem Zhmurov
Add
missing header and d
i
sable f
a
iling test
commit
|
commitdiff
|
tree
2020-02-20
A
r
t
em Zhmurov
Do not c
a
ll PME GPU buil
d
er i
n
CPU
c
ode paths
commit
|
commitdiff
|
tree
2020-02-20
Artem Zhmurov
Us
e
GR
O
MACS w
r
appers for EX
P
ECT_THROW
/
N
O_THRO
W
in
PME
.
.
.
commit
|
commitdiff
|
tree
2020-02-17
Szilárd Páll
Add simulation workload flag f
o
r d
i
pole
computation
commit
|
commitdiff
|
tree
2020-02-15
Szilárd P
á
ll
Fix gpuudpat
e
and gpucomm
matri
x
doc
s
commit
|
commitdiff
|
tree
2020-02-15
Be
r
k H
e
ss
R
emove 1
p
ulse
DD r
e
quest
commit
|
commitdiff
|
tree
2020-02-15
A
lan Gr
a
y
Mult
i
p
le pu
l
se
s
for GP
U
Halo Excha
n
ge
commit
|
commitdiff
|
tree
2020-02-11
A
r
te
m
Zhmurov
Clean
up tr
i
via
l
fun
c
tion and du
p
l
i
ca
t
ing
m
acroses
.
.
.
commit
|
commitdiff
|
tree
2020-02-11
A
r
te
m
Zhmurov
Fix the nightly fa
i
l
u
r
e
commit
|
commitdiff
|
tree
2020-02-08
Arte
m
Z
hm
u
rov
Temporary disable RVec->float3 conversion test
t
o fix
.
.
.
commit
|
commitdiff
|
tree
2020-02-06
Ar
t
em Zhm
u
rov
Move
DeviceInfo into GPU
trait
s
commit
|
commitdiff
|
tree
2020-02-05
Art
e
m
Zhmurov
M
a
ke Op
e
nCL DeviceVendor i
n
to enum class and move to
.
.
.
commit
|
commitdiff
|
tree
2020-02-05
Artem
Zhmurov
Move non-bonded initial
i
zation out of the forcerec
commit
|
commitdiff
|
tree
2020-02-05
Pascal Merz
T
e
st Padded
V
ector t
o
Array
R
ef c
o
nversion
commit
|
commitdiff
|
tree
2020-02-05
Artem Zhmurov
Fix ty
p
o
in an
d
r
em
o
v
e
a couple of duplic
a
tes from
.
.
.
commit
|
commitdiff
|
tree
2020-02-01
Artem
Z
hmurov
Couple cool quotes
commit
|
commitdiff
|
tree
2020-02-01
Artem Zhm
u
rov
Merge
"
Merge
branch origin/rele
a
s
e-20
2
0 i
n
t
o
master"
commit
|
commitdiff
|
tree
2020-01-29
Artem Zhmuro
v
Reorganize GPU stuff initia
l
ization in PME-only ranks
commit
|
commitdiff
|
tree
2020-01-29
Artem
Z
hm
u
rov
Rena
m
e U
p
dateConstrain
t
sCuda to UpdateConstraintsGpu
commit
|
commitdiff
|
tree
2020-01-24
Pa
u
l Bauer
Add co
o
l quotes
commit
|
commitdiff
|
tree
2020-01-24
S
zilárd Páll
Fix deadlock in PP-P
M
E bala
n
cing st
a
r
t
up
dela
y
commit
|
commitdiff
|
tree
2020-01-22
Berk
Hess
Clarify COMM/posres grom
p
p note
commit
|
commitdiff
|
tree
2020-01-19
Szilárd Pál
l
Template X
b
u
ffer ops on
s
e
t
FillerC
o
ords
commit
|
commitdiff
|
tree
2020-01-09
Artem Zhmurov
Ch
a
n
g
e signature of the
setPbc(
.
.
.
) m
e
thod in update
.
.
.
commit
|
commitdiff
|
tree
2020-01-09
Artem Zhmurov
M
a
ke PBC ty
p
e en
u
meration into PbcType
en
u
m
c
la
s
s
commit
|
commitdiff
|
tree
2020-01-09
Al
a
n Gr
a
y
Fix memory
a
d
dress bu
g
in GPU PME coordinate address
.
.
.
commit
|
commitdiff
|
tree
2019-12-30
Mark Abraham
Remov
e
use of tup
l
e
i
n LINC
S
code fo
r
G
PU
i
mple
m
entation
commit
|
commitdiff
|
tree
2019-12-20
Paul Bauer
Fix wrong header in
r
el
e
ase notes
commit
|
commitdiff
|
tree
2019-12-18
A
l
an Gra
y
Fix conditio
n
a
l
on assertio
n
for c
o
mbining GPU
U
pdate
.
.
.
commit
|
commitdiff
|
tree
2019-12-17
Berk Hess
Add n
o
te for C
O
M removal with position restraints
commit
|
commitdiff
|
tree
2019-12-17
A
rtem Z
h
murov
Clean-
u
p buffer-op
s
C
U
DA kernels
commit
|
commitdiff
|
tree
2019-12-17
Szilárd Páll
Comment the use of waitCoordina
t
esCopi
e
d
ToDe
v
ice
commit
|
commitdiff
|
tree
2019-12-17
Paul Bauer
Set c
o
rrect depende
n
cy for doc build on gmx
a
pi
commit
|
commitdiff
|
tree
2019-12-17
Paul Bauer
Fix
compil
e
r warning about extra ;
commit
|
commitdiff
|
tree
2019-12-17
Szilárd Páll
Add w
a
llcycle counting to Stat
e
P
ropagato
r
Dat
a
G
p
u
commit
|
commitdiff
|
tree
2019-12-12
Paul Bau
e
r
Me
r
g
e
branch 'orig
i
n/release-2020' into master
commit
|
commitdiff
|
tree
2019-12-11
Artem Zhmurov
Enable most of the pulling flavors with GP
U
update
commit
|
commitdiff
|
tree
2019-12-10
Artem Zhmurov
Avoid un
n
ecessary reinterpret_cast of coordinates
b
uffer
commit
|
commitdiff
|
tree
2019-12-10
Artem Zh
m
u
rov
S
et GPU update to
false
i
n
case of a rerun
commit
|
commitdiff
|
tree
2019-11-29
Arte
m
Zhmurov
M
a
ke
L
eap-Frog CUDA kernel selec
t
ion safer
commit
|
commitdiff
|
tree
2019-11-28
Arte
m
Zhmurov
Fix pres
s
ure coupli
n
g with GPU
upd
a
te
commit
|
commitdiff
|
tree
2019-11-27
Ar
t
em Z
h
murov
Combine two bool
e
a
n
s
in
md loop
commit
|
commitdiff
|
tree
2019-11-27
M
a
rk
A
braham
Disable G
P
U PME-PP com
m
unic
a
tion w
i
t
h mdrun -pmefft cpu
commit
|
commitdiff
|
tree
2019-11-26
Alan Gray
Bug
f
ix for nonlocal
D
2H coordinate transfer synchronization
commit
|
commitdiff
|
tree
2019-11-23
Artem Zhmur
o
v
New coo
l
quot
e
commit
|
commitdiff
|
tree
2019-11-20
Alan Gray
Move
p
mePpCommGpu re
s
et outsi
d
e
d
o_md
commit
|
commitdiff
|
tree
2019-11-19
Mark
Abr
a
h
am
U
p
dat
e
d
release notes for CO
D
ATA up
d
ate
commit
|
commitdiff
|
tree
2019-11-19
Artem Zhmurov
Fix icc-19 warning in night
l
y matrix
commit
|
commitdiff
|
tree
2019-11-15
Artem Zhmurov
Removing
code duplicat
i
ons in StatePro
p
agatorDataGp
u
commit
|
commitdiff
|
tree
2019-11-13
Paul B
a
u
e
r
Add build t
o
ru
n
clang-format upd
a
te
o
n
Jenkins
commit
|
commitdiff
|
tree
2019-11-03
Szilárd P
á
ll
I
m
prove S
i
mulationW
o
rkload d
o
xy
g
en
commit
|
commitdiff
|
tree
2019-10-30
Berk Hes
s
F
i
x walls
w
ith G
P
U up
d
a
t
e
commit
|
commitdiff
|
tree
2019-10-29
Berk Hess
D
isab
l
e pre
s
sure coupling with
GP
U
update
commit
|
commitdiff
|
tree
2019-10-28
Szilárd
Páll
Extend Simulatio
n
Workloa
d
with CPU
f
la
g
s
commit
|
commitdiff
|
tree
2019-10-21
S
z
ilárd Páll
Override GMX_GPU_DD_COMMS if nonbondeds are of
f
commit
|
commitdiff
|
tree
2019-10-18
Artem Zh
m
urov
Re
m
ove exce
s
si
v
e
H2
D
and D2H coordinates cop
i
es when
.
.
.
commit
|
commitdiff
|
tree
2019-10-17
Szi
l
árd
P
á
ll
D
isable
G
M
X_GPU_PM
E
_PP_C
O
MMS if PME
is not o
f
f
l
oaded
commit
|
commitdiff
|
tree
2019-10-16
Szilá
r
d Páll
Fix initialization of
field in PME data str
u
ct
u
r
e
commit
|
commitdiff
|
tree
2019-10-16
Artem Zhmurov
Link GPU force produce
r
and consu
m
er
tasks
commit
|
commitdiff
|
tree
2019-10-15
Alan Gray
PME/PP GPU
Pimpl Class an
d
GPU->CPU Co
m
municat
i
on f
o
r
.
.
.
commit
|
commitdiff
|
tree
2019-10-15
Szilárd Páll
Li
n
k GPU coordi
n
at
e
pro
d
ucer an
d
consumer
tasks
commit
|
commitdiff
|
tree
2019-10-14
Artem Zhmurov
Add separate
c
o
n
structor
to S
t
atePropagatorDataGpu
.
.
.
commit
|
commitdiff
|
tree
2019-10-13
Szilárd
Páll
Enable S
t
atePropagatorG
p
uData for for
c
e transf
e
rs
commit
|
commitdiff
|
tree
2019-10-13
Szi
l
árd Páll
Mo
v
e
buffe
r
o
p
s
/
PME F reduction flags into
StepWo
r
kload
commit
|
commitdiff
|
tree
2019-10-12
A
rtem Zhmurov
Centr
a
l
ize manage
m
ent of forces
r
eady on GPU event
commit
|
commitdiff
|
tree
2019-10-12
Artem Zhmurov
Change copy m
o
de
to Async in P
M
E only r
a
nk
commit
|
commitdiff
|
tree
2019-10-11
A
rtem
Zhm
u
rov
Wrong locality was
used wh
e
n
i
gnoring th
e
PME force
.
.
.
commit
|
commitdiff
|
tree
2019-10-10
Szilárd Páll
Migr
a
te code to us
i
ng Simula
t
ionW
o
rkl
o
ad
f
lags
commit
|
commitdiff
|
tree
2019-10-10
Szilárd
P
áll
Remove incorrect GPU ta
s
k depe
n
d
e
n
c
y
commit
|
commitdiff
|
tree
2019-10-10
S
z
ilárd Páll
P
ass
l
is
t
o
f
EventSy
n
chronize
r
s to GPU re
d
uc
t
io
n
commit
|
commitdiff
|
tree
2019-10-10
Paul Bau
e
r
Basic
p
opulation
o
f
simulation w
o
rkload
commit
|
commitdiff
|
tree
2019-10-10
Ar
t
em Zh
m
urov
Add
managem
e
nt
f
or ve
l
o
c
ities an
d
for
c
es copy
e
vents
.
.
.
commit
|
commitdiff
|
tree
2019-10-10
Szilárd Páll
Add management for coordinates copy
e
v
e
nts
into S
t
a
t
ePr
o
paga
.
.
.
commit
|
commitdiff
|
tree
2019-10-07
Artem Z
h
murov
Pass
the
GPU strea
m
s to StatePropagatorDa
t
a
G
pu
constr
u
ctor
commit
|
commitdiff
|
tree
2019-10-07
Mark Ab
r
aham
E
xtend
G
PU t
r
a
its class
commit
|
commitdiff
|
tree
2019-10-07
A
rt
e
m Zhmur
o
v
Clean up the comments
sections
i
n
U
pdate
-
Constrain
commit
|
commitdiff
|
tree
2019-10-07
Artem
Z
h
murov
Fix a
b
ug in GPU
h
al
o
ex
c
hange i
n
itializat
i
on
commit
|
commitdiff
|
tree
2019-10-03
Berk He
s
s
Use g
m
x::Rang
e
f
o
r
i
Zo
n
es in pair search
commit
|
commitdiff
|
tree
2019-10-02
C
a
rsten Kutz
n
e
r
Update the www link
t
o the Doxyge
n
docume
n
tation in
.
.
.
commit
|
commitdiff
|
tree
2019-09-30
Sz
i
lárd Páll
M
o
ve PME
G
PU program buil
d
in
g
l
a
t
e
r
commit
|
commitdiff
|
tree
2019-09-27
Arte
m
Zh
m
uro
v
Sl
i
ght im
p
roveme
n
ts to GPU update/const
r
aints initializ
a
t
i
on
commit
|
commitdiff
|
tree
2019-09-27
Szilárd Pál
l
S
w
itch GPU update off b
y
default
commit
|
commitdiff
|
tree
2019-09-27
Artem Zhm
u
rov
Introdu
c
e str
e
am man
a
g
ement t
o
GPU Update-Constrain
t
s
commit
|
commitdiff
|
tree
2019-09-27
Ber
k
Hess
Extract gm
x
::Range
commit
|
commitdiff
|
tree
2019-09-27
Mark Abra
h
am
St
o
p chec
k
i
n
g CUDA version reported by nvc
c
commit
|
commitdiff
|
tree
2019-09-22
Arte
m
Zhmurov
Disable GP
U
update/con
s
tra
i
nts
w
h
e
n
ne
i
ther PME
nor
.
.
.
commit
|
commitdiff
|
tree
2019-09-11
Mark Abraham
Make gmx_multisim_t
a
C++ obj
e
ct
commit
|
commitdiff
|
tree
2019-09-10
Ma
r
k Ab
r
a
h
am
Avoid warni
n
g in no-mpi
b
uild
commit
|
commitdiff
|
tree
next