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Leave NVML use off by default
2017-12-11
Mark A
b
raham
Leave NV
M
L use off b
y
de
f
ault
commit
|
commitdiff
|
tree
2017-12-11
Mark Abraham
Check for GPU detection sup
p
ort before det
e
cting
commit
|
commitdiff
|
tree
2017-12-11
Mark
A
braham
Avoid sig
n
ed-overflow warnin
g
with gc
c
7
commit
|
commitdiff
|
tree
2017-12-11
Mark Abraham
Remove SIMD shift
op
e
r
a
tors
commit
|
commitdiff
|
tree
2017-12-10
Berk Hes
s
Remove S
I
M
D
warning for AMD Zen
commit
|
commitdiff
|
tree
2017-12-10
Berk Hes
s
Tone down note about not pinning thre
a
ds
commit
|
commitdiff
|
tree
2017-12-10
Szilárd Páll
Disable
d
efault
-
on NVM
L
support in C
M
ake
commit
|
commitdiff
|
tree
2017-12-07
Rola
n
d
S
c
hulz
Fi
x
C++11 li
b
rary check's t
h
read depen
d
ency
commit
|
commitdiff
|
tree
2017-12-03
Be
r
k
Hess
Cl
e
ar
vsite
v
el
o
cities for sim
p
l
e
integrators
commit
|
commitdiff
|
tree
2017-12-03
Mark Ab
r
aham
Fix fft5d pinning
commit
|
commitdiff
|
tree
2017-12-02
Be
r
k Hes
s
Avoid asse
r
tion fai
l
u
r
e
in AWH
commit
|
commitdiff
|
tree
2017-11-29
B
erk Hess
Cha
n
ge the GPU SMT
cut
-
off
t
o q
u
adratic
commit
|
commitdiff
|
tree
2017-11-28
Erik Lindahl
Fix AVX-512 SIMD
t
est for C
commit
|
commitdiff
|
tree
2017-11-27
Alekse
i
Iupinov
Do not
f
orce separate P
M
E rank t
o
recompute re
c
iprocal
.
.
.
commit
|
commitdiff
|
tree
2017-11-27
Erik Lindahl
Test more A
V
X-512
F
instruc
t
ions before ena
b
l
i
n
g
suppo
r
t
commit
|
commitdiff
|
tree
2017-11-24
E
rik
Lindahl
Detect AVX-512 F
M
A units to choose best SIMD
commit
|
commitdiff
|
tree
2017-11-24
Berk Hess
L
i
m
it SMT w
i
th PME
o
n GPU
commit
|
commitdiff
|
tree
2017-11-20
Viveca Lindah
l
A
d
d reading and writing to AWH module
commit
|
commitdiff
|
tree
2017-11-20
Mark Abraham
Fix night
l
y matrix confi
g
commit
|
commitdiff
|
tree
2017-11-19
Berk
Hess
Add SIMD for AWH
commit
|
commitdiff
|
tree
2017-11-18
Magnus Lund
b
o
r
g
Added
Magnus Lun
d
borg
a
s
c
ontributor in the ma
n
ual
.
commit
|
commitdiff
|
tree
2017-11-18
A
leks
e
i Iupinov
Asynchronou
s
CUDA transfers
a
re asserted to a
l
ways
.
.
.
commit
|
commitdiff
|
tree
2017-11-10
Rola
n
d Sch
u
lz
Revert
"Use -mavx
2
-mfm
a
instea
d
of -
m
arch with AVX2"
commit
|
commitdiff
|
tree
2017-11-08
Roland
Schulz
Fix s
c
alar
b
lend
commit
|
commitdiff
|
tree
2017-11-08
Magnu
s
Lundborg
U
p
d
ate
to T
N
G v 1
.
8
.
1
commit
|
commitdiff
|
tree
2017-09-09
Berk Hess
Avoid inf in SIMD double
s
q
rt()
commit
|
commitdiff
|
tree
2017-07-19
M
ark Abraham
Improve CMake
i
mplementation f
o
r GMX
_
SIMD
commit
|
commitdiff
|
tree
2017-06-29
T
eemu Murt
o
la
Generalize IForc
e
Provi
d
er
commit
|
commitdiff
|
tree
2017-06-15
S
z
ilárd Pá
l
l
Al
l
ow
d
isabl
i
ng the
e
x
plicit use of CU
D
A te
x
tu
r
e
s
commit
|
commitdiff
|
tree
2017-06-14
Ma
r
k Abr
a
ham
S
i
m
pl
i
fy reporting
from init_gpu
commit
|
commitdiff
|
tree
2017-06-13
E
rik Lin
d
ah
l
M
o
re quo
t
es
commit
|
commitdiff
|
tree
2017-06-07
Vedran Miletić
Docume
n
t
float
i
ng-poi
n
t
a
rithmetic
commit
|
commitdiff
|
tree
2017-05-29
Sz
i
lárd Páll
Quotes are cool, typo
-
free ones are
even "
c
oo
l
er"
commit
|
commitdiff
|
tree
2017-05-27
Mark Abrah
a
m
Q
u
otes from Gott
i
nge
n
workshop
commit
|
commitdiff
|
tree
2017-05-14
Berk
H
ess
F
i
x bugs in
double Simd4 implementations
commit
|
commitdiff
|
tree
2017-03-19
Erik Linda
h
l
Use OpenMP up
to
1
6 threads wi
t
h
AMD Ryz
e
n
commit
|
commitdiff
|
tree
2017-03-19
E
r
ik Lindahl
128-bit AVX2
S
IMD for AMD Ryzen
commit
|
commitdiff
|
tree
2017-03-19
Mark Abraham
F
ix st
r
ing handlin
g
for gcc 7
commit
|
commitdiff
|
tree
2017-03-14
Erik Lindah
l
F
i
x gcc compiles of AVX-512 S
I
MD
commit
|
commitdiff
|
tree
2017-02-14
Mark Ab
r
a
h
am
Fix handl
i
n
g of previous virials
commit
|
commitdiff
|
tree
2017-02-10
Roland S
c
hulz
R
e
move dupl
i
cate
AVX512 gather defi
n
itions
commit
|
commitdiff
|
tree
2017-02-09
Er
i
k Lindahl
Work a
r
ound false xl
c
-13
.
1
.
5 bu
g
in SIMD te
s
t
commit
|
commitdiff
|
tree
2017-02-09
Mark Abraham
R
e
move E
S
T_DISTR from state
.
h
commit
|
commitdiff
|
tree
2017-02-09
Mark Abrah
a
m
Enha
n
ce warninp
commit
|
commitdiff
|
tree
2017-02-08
Roland Schulz
AVX512: Use double-sized gather for pairs of f
l
oats
commit
|
commitdiff
|
tree
2017-02-07
Mark Abra
h
am
Introduced system preparati
o
n s
e
cti
o
n to user guide
commit
|
commitdiff
|
tree
2017-02-03
D
avid van
der Spoel
Fixes SEGV in
g
mx
o
rder
.
commit
|
commitdiff
|
tree
2017-01-11
Rola
n
d S
c
hulz
Ti
d
y: mod
e
rnize-use-nullptr
commit
|
commitdiff
|
tree
2016-11-03
Roland
S
chulz
Supress ICC 16 on
Windows f
a
lse
p
o
s
tive
s
commit
|
commitdiff
|
tree
2016-10-30
Teemu
M
urt
o
l
a
Su
p
port
n
ormalizing
v
alues in KeyValue
T
ree
commit
|
commitdiff
|
tree
2016-10-30
Roland
S
ch
u
lz
Replace qsort/bs
e
arch w
i
t
h std
:
:sort/lower_
b
oun
d
commit
|
commitdiff
|
tree
2016-10-11
M
a
r
k
A
braham
Update
f
or
F
FTW 3
.
3
.
5
commit
|
commitdiff
|
tree
2016-09-26
David v
a
n der Spoel
Fixes
issue with Relea
s
e bui
l
d in
c
orrelation functions
.
commit
|
commitdiff
|
tree
2016-09-18
R
o
land
S
c
hu
l
z
Fix math-test f
a
lse positive
commit
|
commitdiff
|
tree
2016-09-18
R
o
l
and
S
chu
l
z
Better optimized ICC rel
e
a
s
e
f
l
a
gs
commit
|
commitdiff
|
tree
2016-09-12
M
a
rk
Abraham
Prelimina
r
y clean
up of NVML code
commit
|
commitdiff
|
tree
2016-09-12
Berk Hess
Ad
d
cons
t
to t
h
r
ead-MPI functions
commit
|
commitdiff
|
tree
2016-09-12
Vedran Miletić
Docume
n
t wall
c
ycle counters an
d
subcounters
commit
|
commitdiff
|
tree
2016-09-12
Teemu Murtola
F
ix vario
u
s
me
m
or
y
leaks
commit
|
commitdiff
|
tree
2016-07-31
J
ames Gr
a
ham
Avoid blank line in
w
r
iting index f
i
le
commit
|
commitdiff
|
tree
2016-07-30
R
olan
d
Schulz
Upd
a
te GC
C
ve
r
si
o
n for reference
build
commit
|
commitdiff
|
tree
2016-07-30
Vedran
M
i
let
i
ć
Docum
e
nt gm
x
_
cgsort_t and gmx_domdec_sort_t
structs
commit
|
commitdiff
|
tree
2016-07-09
Erik Lin
d
ahl
P
r
e
v
e
nt fragile use cases of che
c
k
p
oint appending
commit
|
commitdiff
|
tree
2016-07-08
E
r
ik Li
n
da
h
l
Update affinity checking fo
r
Intel co
m
piler
commit
|
commitdiff
|
tree
2016-07-08
Er
i
k Lindahl
Work a
r
ound compiler i
s
sue
w
ith rando
m
test
commit
|
commitdiff
|
tree
2016-07-08
Szilárd Páll
Add PDF
m
etadata to the manua
l
commit
|
commitdiff
|
tree
2016-07-07
Erik Li
n
d
a
hl
Reduce h
w
l
o
c
& cpuid test requireme
n
ts
commit
|
commitdiff
|
tree
2016-07-07
T
e
e
m
u Murtola
Change handling
f
o
r missing rel
e
ng docs
commit
|
commitdiff
|
tree
2016-07-07
S
z
i
l
árd Páll
Add u
s
er
g
uide info on CUDA applicati
o
n cloc
k
s
commit
|
commitdiff
|
tree
2016-07-07
Mark
A
braham
F
i
x
build if libcuda is f
o
u
n
d
bu
t
nvcc is not
commit
|
commitdiff
|
tree
2016-06-07
Semen
Yesylevsk
y
y
Ad
d
ed manu
a
l sec
t
i
on
a
bou
t
embe
d
di
n
g proteins to membrane
s
.
commit
|
commitdiff
|
tree
2016-06-05
Szilárd Páll
Add support for CUDA C
C
6
.
0/6
.
1
commit
|
commitdiff
|
tree
2016-06-03
B
e
rk Hess
Handle p
a
rt
i
all
y
frozen and con
s
trained atoms
commit
|
commitdiff
|
tree
2016-06-02
Szilárd Páll
Add env
.
var
.
to
e
nable Op
e
nCL cach
i
ng
commit
|
commitdiff
|
tree
2016-06-02
S
zilárd
Páll
F
ix Open
C
L
binary cac
h
e file name generation
commit
|
commitdiff
|
tree
2016-06-02
R
oland S
c
hulz
Fix ICC 16u
3
build
commit
|
commitdiff
|
tree
2016-06-02
Patrick Welc
h
e
Ensure IMD
include de
p
endencie
s
work
commit
|
commitdiff
|
tree
2016-05-29
M
a
r
k
Abraham
Sim
p
lif
i
e
d and
updated OpenCL com
p
ilati
o
n
commit
|
commitdiff
|
tree
2016-05-23
Berk Hess
Fix bug in v-
r
e
scale thermo
s
tat & r
e
p
li
c
a exchange
commit
|
commitdiff
|
tree
2016-05-10
E
r
ik Lindahl
Fixed
large fi
l
e issue on 32-bit plat
f
o
rms
commit
|
commitdiff
|
tree
2016-05-08
Berk Hess
U
p
d
ate mdrun t
e
rmination info
commit
|
commitdiff
|
tree
2016-04-03
Berk Hess
Correct nrdf for 1D/2D systems
commit
|
commitdiff
|
tree
2015-12-24
Erik Li
n
da
h
l
Extended
S
IMD, implemen
t
a
tion for IBM Pow
e
r7/8 VSX
commit
|
commitdiff
|
tree
2015-12-21
E
rik Lindahl
Extended S
I
MD, implementation for BlueGene/Q
commit
|
commitdiff
|
tree
2015-12-21
Eri
k
Lindahl
E
x
te
n
ded
S
IM
D
i
m
plementation for 256-bit AVX and AVX2
commit
|
commitdiff
|
tree
2015-12-16
Erik Lindahl
Next-g
e
neration SIMD
modu
l
e, reference implementa
t
ion
commit
|
commitdiff
|
tree
2015-10-30
Erik Lindah
l
B
r
e
a
k dependence of
g
roup k
e
r
nels on simd module
commit
|
commitdiff
|
tree
2015-09-30
Roland Schulz
R
e
q
u
ire C++11
commit
|
commitdiff
|
tree
2015-08-13
Mark Abraham
Re-enable mu
l
ti-GPU support in OpenCL
for thread MPI
commit
|
commitdiff
|
tree
2015-08-05
Erik
L
indahl
Fix PGI compiler
fla
g
commit
|
commitdiff
|
tree
2015-07-27
Erik Lin
d
ahl
Move
d
addit
i
onal
g
mxlib
s
ources to C++
commit
|
commitdiff
|
tree
2015-07-26
M
ark Ab
r
aham
Conve
r
t s
o
me
mdrun utilit
y
co
d
e to C+
+
commit
|
commitdiff
|
tree
2015-07-26
Erik
Lin
d
ahl
Merge br
a
nch r
e
lease-5-1
commit
|
commitdiff
|
tree
2015-07-07
E
r
ik Lindah
l
Move QM
M
M source to
C
++
commit
|
commitdiff
|
tree
2015-07-05
Berk Hess
Fi
x
DD DL
B
s
t
ate i
s
sue
commit
|
commitdiff
|
tree
2015-06-27
Er
i
k Lindahl
Fix single-
p
rec
.
softcore issue in 4
.
6 branc
h
commit
|
commitdiff
|
tree
2015-02-20
Erik Lindahl
Famous quote from Colleen McCu
l
loug
h
commit
|
commitdiff
|
tree
2015-02-20
Er
i
k Lindahl
A
d
d
ed tw
o
p
op
-
culture q
u
ote
s
fro
m
A
n
dy Warhol
.
commit
|
commitdiff
|
tree
2014-09-20
Erik L
i
nd
a
hl
Fix RelWithDebInf
o
na
m
e
b
ugs, and use full optim
i
zat
i
on
.
commit
|
commitdiff
|
tree
2014-09-02
Erik Lindahl
Fixed string var expansi
o
n in CMake due to CMP
0
053
commit
|
commitdiff
|
tree
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