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Use new GPU infrastructure in MDLib tests
2020-10-06
A
r
t
em Zhmurov
Use new GPU i
n
f
r
as
t
ru
c
ture in MDLib tests
commit
|
commitdiff
|
tree
2020-10-01
Artem Z
h
m
ur
o
v
Add
missing include into th
e
t
ests
comp
a
rison helper
commit
|
commitdiff
|
tree
2020-09-30
A
r
t
e
m
Zhmur
o
v
Restore dest
r
uctor for GpuTest and g
m
x_hw_info_t
commit
|
commitdiff
|
tree
2020-09-29
Artem
Z
hmurov
Remove
t
wo-stage initializat
i
on in D
e
v
i
ceStream
commit
|
commitdiff
|
tree
2020-09-28
A
rtem Z
h
murov
add detect
i
on of CPX 5300 w/ 2FMAs
commit
|
commitdiff
|
tree
2020-09-21
Artem Z
h
murov
Do not
r
un P
i
nnedM
e
m
o
ryCh
e
ckerTest when there are no
.
.
.
commit
|
commitdiff
|
tree
2020-09-21
Arte
m
Zhmur
o
v
Move the message to th
e
deprEcation-policy
f
i
le
commit
|
commitdiff
|
tree
2020-09-20
Ar
t
em Zhmurov
Set active devi
c
e when the dev
i
c
e stream manager is
.
.
.
commit
|
commitdiff
|
tree
2020-09-20
Artem
Z
h
m
urov
Allow using o
l
d envir
o
nment variables, but print deprec
a
tion
.
.
.
commit
|
commitdiff
|
tree
2020-09-17
A
rtem Z
h
mu
r
ov
Remove
the CPU hardware context
f
rom the
g
e
n
eral li
s
t
.
.
.
commit
|
commitdiff
|
tree
2020-09-15
Artem Zhmurov
Use common device context header for OpenCL
commit
|
commitdiff
|
tree
2020-09-15
Artem Z
h
murov
Fix VS
i
te o
u
t of range erro
r
mes
s
age
commit
|
commitdiff
|
tree
2020-09-14
Art
e
m Z
h
murov
Use common device context header for
Op
e
nC
L
commit
|
commitdiff
|
tree
2020-09-11
Artem
Z
hmurov
Define stubs for GPU
d
a
t
a str
u
ctures in SYCL
t
o make
.
.
.
commit
|
commitdiff
|
tree
2020-09-10
A
r
t
e
m Zhmuro
v
Use commo
n
d
e
vice context
head
e
r for OpenC
L
commit
|
commitdiff
|
tree
2020-09-10
A
r
tem Zhmurov
U
se device i
n
formation object instead
of id when performing
.
.
.
commit
|
commitdiff
|
tree
2020-09-10
A
r
tem Zhmurov
Unify more functi
o
n
s
in CUDA and
OpenCL implementations
.
.
.
commit
|
commitdiff
|
tree
2020-09-09
Artem Z
h
m
u
rov
R
e
store GMX_FORCE_UPDATE_DEF
A
UL
T
_GPU envi
r
onme
n
t
varible
.
.
.
commit
|
commitdiff
|
tree
2020-09-07
A
rtem Zhmurov
Remove in-body
comment
f
r
om
init_forc
e
r
e
c(
.
.
.
)
f
unction
commit
|
commitdiff
|
tree
2020-09-07
A
rtem Zhmurov
F
ix clang-
f
ormat
commit
|
commitdiff
|
tree
2020-09-07
A
rtem Zhmurov
Access the de
v
ice status d
i
rectly, remove
t
h
e ge
t
ter
commit
|
commitdiff
|
tree
2020-08-24
Artem Zhm
u
rov
Move GPU
d
evices management
into hardware subf
o
lder
commit
|
commitdiff
|
tree
2020-08-14
Ar
t
em Zhmurov
Fix DeviceStream
M
a
nager tests
commit
|
commitdiff
|
tree
2020-07-29
Artem Zhmurov
Revert
c++-17 features
t
hat are not suppo
r
ted by CUDA
.
.
.
commit
|
commitdiff
|
tree
2020-07-29
A
r
tem Zhmu
r
ov
R
e
vert c++-17 features that a
r
e no
t
supported b
y
C
UDA
.
.
.
commit
|
commitdiff
|
tree
2020-07-27
Artem
Z
hmurov
Fix clang-tidy warnin
g
commit
|
commitdiff
|
tree
2020-07-15
A
r
tem Zhm
u
rov
Fix t
h
e suspicious string literal error in
GPU
status
.
.
.
commit
|
commitdiff
|
tree
2020-07-07
A
rtem Zh
m
ur
o
v
M
ak
e
cl_nbp
a
r
a
m
i
nto a
s
truct
commit
|
commitdiff
|
tree
2020-06-26
Artem Zhmurov
Make holder fo
r
simulation configuration
commit
|
commitdiff
|
tree
2020-06-25
Artem
Z
hmurov
Make cl_nbparam into a s
t
ruct
commit
|
commitdiff
|
tree
2020-06-24
Ar
t
em Zhmurov
Fix m
i
nor nit-
p
ic
k
s
commit
|
commitdiff
|
tree
2020-06-22
Artem
Z
h
murov
Remove DeviceStrea
m
include from
GPU trait
s
commit
|
commitdiff
|
tree
2020-06-16
A
r
t
e
m Zh
m
urov
Add mi
s
sing end-of-l
i
ne in t
h
e GPU update assig
n
ment
.
.
.
commit
|
commitdiff
|
tree
2020-06-12
Artem Zhmurov
Replace
compile_cpp_as_cuda(
.
.
.
)
w
ith CUDA runt
i
me
.
.
.
commit
|
commitdiff
|
tree
2020-06-09
Artem Zhmurov
Make SD st
u
ff private for
update
.
cpp
commit
|
commitdiff
|
tree
2020-06-09
A
rtem Zhmuro
v
Mak
e
SD stu
f
f
p
r
i
v
ate for u
p
date
.
cpp
commit
|
commitdiff
|
tree
2020-06-08
Ar
t
e
m
Zhmurov
Move constraints
r
elate
d
l
ogic to cons
t
rai
n
ts file
commit
|
commitdiff
|
tree
2020-06-08
Ar
t
em
Z
hmurov
Uni
f
y VdW and E
l
ectr
o
stati
c
kernel enu
m
era
t
ions in
.
.
.
commit
|
commitdiff
|
tree
2020-06-05
Artem Zh
m
urov
M
o
v
e
calc
u
la
t
ion o
f
kin
e
t
i
c energy to md
_
support
commit
|
commitdiff
|
tree
2020-06-05
Artem Z
h
murov
Make a error message les
s
conf
u
sing
commit
|
commitdiff
|
tree
2020-06-04
Ar
t
em Z
h
murov
Make a er
r
or message less co
n
fu
s
ing
commit
|
commitdiff
|
tree
2020-06-04
Artem Zhmurov
Upd
a
te th
e
release notes
commit
|
commitdiff
|
tree
2020-06-04
Artem Zhmu
r
ov
Coo
l
quote
commit
|
commitdiff
|
tree
2020-05-29
Arte
m
Zhmurov
Unify initialization of GPU and C
P
U
S
E
TTLE
commit
|
commitdiff
|
tree
2020-05-26
Ar
t
em
Z
hmurov
R
e
move the dependence on Constraints object on t_mdatoms
commit
|
commitdiff
|
tree
2020-05-25
A
r
t
e
m Zhmuro
v
Remo
v
e dependence o
n
t_mdat
o
ms from GPU vers
i
on of
.
.
.
commit
|
commitdiff
|
tree
2020-05-23
Artem Zhmurov
Remove dependence
o
n t_m
d
atoms from pull code
commit
|
commitdiff
|
tree
2020-05-22
A
rtem
Z
hmuro
v
R
emove depen
d
ence of constrain
t
s on t_mdatoms
commit
|
commitdiff
|
tree
2020-05-22
Artem Zhmur
o
v
Remove
d
epen
d
ence of constraints on t_md
a
tom
s
commit
|
commitdiff
|
tree
2020-05-15
Artem Zh
m
urov
Un
i
f
y CUDA
and OpenCL looku
p
-table creation
commit
|
commitdiff
|
tree
2020-05-11
Artem Zhmuro
v
Re
m
o
v
e the
dup
l
icating note from the release notes
commit
|
commitdiff
|
tree
2020-05-11
A
rtem Zhmurov
U
n
i
f
y CUDA and OpenC
L
l
o
okup-table
creation
commit
|
commitdiff
|
tree
2020-05-05
Artem Zhmuro
v
Unif
y
CUDA and Ope
n
CL
l
ookup-tabl
e
creation
commit
|
commitdiff
|
tree
2020-05-04
Artem Zhmurov
Unify CUDA
and OpenCL
l
ookup-table creati
o
n
commit
|
commitdiff
|
tree
2020-04-29
Artem Zhm
u
r
o
v
Fix the n
u
m
b
er of steps check whe
n
c
heck
p
o
i
nt is
l
oade
d
commit
|
commitdiff
|
tree
2020-04-27
Artem Zhmurov
F
ix the remo
v
al of COM v
e
loci
t
y
i
n
case of GPU u
p
dat
e
commit
|
commitdiff
|
tree
2020-04-27
A
r
t
e
m
Z
h
murov
M
ove P
B
C setup ou
t
o
f
the lau
n
chKernel(
.
.
.
) in GPU
.
.
.
commit
|
commitdiff
|
tree
2020-04-20
Artem Zhmurov
Fix the number
of steps
ch
e
ck when
checkpoint is loaded
commit
|
commitdiff
|
tree
2020-04-16
Art
e
m
Zhmurov
New cool quote
commit
|
commitdiff
|
tree
2020-04-16
Arte
m
Zhmurov
Unify CUDA and O
p
e
n
CL lookup-table creation
commit
|
commitdiff
|
tree
2020-03-25
Artem Zhm
u
rov
Make us
e
of the DeviceStreamMa
n
a
g
er
commit
|
commitdiff
|
tree
2020-03-23
Ar
t
em Zhmurov
Intr
o
duce DeviceStreamManager
commit
|
commitdiff
|
tree
2020-03-20
A
rtem Zhmurov
A
d
d OpenCL error reporting
t
o
GPU regi
o
n timer
commit
|
commitdiff
|
tree
2020-03-20
A
rtem Zhmurov
Small fixes to
the
DeviceStre
a
m
commit
|
commitdiff
|
tree
2020-03-19
Artem Zhmurov
Store Dev
i
ceInformation insid
e
the Dev
i
ceCont
e
xt clas
s
commit
|
commitdiff
|
tree
2020-03-19
A
r
te
m
Z
hmurov
Pa
s
s DeviceContext instead o
f
GPU r
u
ntime data
w
hen
.
.
.
commit
|
commitdiff
|
tree
2020-03-18
Ar
t
e
m Zh
m
urov
Make some doxy
g
e
n errors
more clear
commit
|
commitdiff
|
tree
2020-03-13
Artem Zhmurov
Combine initializa
t
ion routines for
GPUs assig
n
ed to
.
.
.
commit
|
commitdiff
|
tree
2020-03-13
Artem Zhmuro
v
Remove
stream from GPU
k
ernel
launch
c
o
nf
i
g
commit
|
commitdiff
|
tree
2020-03-13
Ar
t
em Zhmuro
v
Us
e
Device
S
tream
i
nit(
.
.
.
) fu
n
ctio
n
to cr
e
at
e
streams
commit
|
commitdiff
|
tree
2020-03-13
A
rtem Zhmurov
Make Dev
i
ceStream into a cl
a
ss
commit
|
commitdiff
|
tree
2020-03-11
Artem Zhmur
o
v
Fix t
h
e post-su
b
mit failures
commit
|
commitdiff
|
tree
2020-03-11
Artem Zhmurov
Take
o
ver man
a
ge
m
ent of OpenCL c
o
ntext
f
rom P
M
E a
n
d
.
.
.
commit
|
commitdiff
|
tree
2020-03-10
Artem Zhmurov
Use
i
nit(
.
.
) fu
n
ction to build De
v
i
c
e
C
ontext
commit
|
commitdiff
|
tree
2020-03-09
Artem
Z
hmurov
Make Dev
i
ceContext in
t
o a prop
e
r class
commit
|
commitdiff
|
tree
2020-03-05
Artem Zh
m
urov
Finalize rena
m
ing of
bEn
e
rV
i
r
to computeEn
e
rgyAndV
i
r
ial
commit
|
commitdiff
|
tree
2020-03-04
Artem Zhmur
o
v
Do n
o
t count PM
E
o
n
l
y
rank
w
hen in
i
tializing NBNXM
commit
|
commitdiff
|
tree
2020-03-03
Artem Zhm
u
r
o
v
Move the P
m
ePPCo
m
mGpu initial
i
za
t
io
n
from forcerec
.
.
.
commit
|
commitdiff
|
tree
2020-03-02
A
r
tem
Z
hmurov
Update th
e
m
e
ssage on whether
u
p
date an
d
constraints
.
.
.
commit
|
commitdiff
|
tree
2020-02-25
Artem Zhmurov
Fix the
RVec to float3 con
v
ersion
test
commit
|
commitdiff
|
tree
2020-02-22
Artem
Z
hmurov
Ad
d
missing header and disable failing test
commit
|
commitdiff
|
tree
2020-02-21
Art
e
m
Z
h
murov
Re
f
a
c
tor
and en
a
ble RVec
to float c
o
nversion test
commit
|
commitdiff
|
tree
2020-02-20
Artem
Zhmurov
Do
n
ot call
P
ME
G
PU builder in CPU co
d
e paths
commit
|
commitdiff
|
tree
2020-02-20
Artem Z
h
murov
U
se GROMACS wrappers for EXP
E
CT_THROW/NO
_
THROW in PME
.
.
.
commit
|
commitdiff
|
tree
2020-02-20
Art
e
m Zhmurov
Use CUDA fl
o
at3 vector type instead of fvec
in GPU
.
.
.
commit
|
commitdiff
|
tree
2020-02-11
Artem Zh
m
urov
C
lean
u
p trivial function and dup
l
icatin
g
macroses
.
.
.
commit
|
commitdiff
|
tree
2020-02-11
A
r
tem Zhmurov
F
i
x the
nightly failure
commit
|
commitdiff
|
tree
2020-02-08
Arte
m
Zhmuro
v
T
emporary di
s
a
b
l
e RVe
c
->float3 c
o
nversion test to
f
ix
.
.
.
commit
|
commitdiff
|
tree
2020-02-06
Artem Zhmurov
Use RVec instead
o
f flo
a
t for x,
v and f
device b
u
ffe
r
s
commit
|
commitdiff
|
tree
2020-02-06
A
r
tem Zhmurov
Move D
e
viceInfo into
G
PU traits
commit
|
commitdiff
|
tree
2020-02-05
Artem
Zhmurov
Make OpenCL DeviceV
e
ndor i
n
t
o
enum c
l
as
s
and move to
.
.
.
commit
|
commitdiff
|
tree
2020-02-05
Art
e
m
Z
hmurov
Move
non-b
o
nded in
i
t
i
a
liza
t
ion out of t
h
e forcere
c
commit
|
commitdiff
|
tree
2020-02-05
A
rtem Zhmurov
Fix t
y
po i
n
and
r
emove a
c
ouple
o
f duplic
a
tes
f
rom
.
.
.
commit
|
commitdiff
|
tree
2020-02-03
Artem Zhmurov
Enable
GPU upda
t
e f
o
r supported cases of FEP
commit
|
commitdiff
|
tree
2020-02-01
Artem Zhmurov
Couple cool quotes
commit
|
commitdiff
|
tree
2020-02-01
Artem Zhmurov
Merge "Merge branch origin/
r
elease-2020
i
nto mas
t
e
r
"
commit
|
commitdiff
|
tree
2020-01-30
Artem
Zhmurov
Cleaning b
o
oleans
i
n NBNXM in Open
C
L build
commit
|
commitdiff
|
tree
2020-01-29
Artem Zhmurov
Re
o
rganize GPU stuff
initia
l
ization in PME-o
n
ly ranks
commit
|
commitdiff
|
tree
2020-01-29
Artem
Z
h
murov
Split and move t
h
e
c
heckDeviceBuf
f
er(
.
.
.
) function
.
.
.
commit
|
commitdiff
|
tree
2020-01-29
Artem
Z
hmuro
v
Remove t
h
e rest of
the de
v
ic
e
coordinates manage
m
ent
.
.
.
commit
|
commitdiff
|
tree
next