repo.or.cz
/
gromacs.git
/
search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
first
·
prev
·
next
Use std::vector for checkpoint outputfiles
2018-02-14
Ma
r
k Abraham
U
se
s
td::vector for checkpoin
t
out
p
u
t
files
commit
|
commitdiff
|
tree
2018-02-13
Mark A
b
rah
a
m
Sepa
r
ate mul
t
isi
m
from commrec
commit
|
commitdiff
|
tree
2018-02-12
Ma
r
k Abraham
Re
m
o
v
e
c
ommrec from hardware detectio
n
commit
|
commitdiff
|
tree
2018-02-12
M
a
rk Abraham
Analyse thre
a
ds on node bef
o
re s
e
tting aff
i
niti
e
s
commit
|
commitdiff
|
tree
2018-02-12
Mark Abr
a
ha
m
Fix reading old force
f
i
eld files
commit
|
commitdiff
|
tree
2018-02-09
Mark Abraham
Merge
branch
r
e
l
ease-201
8
commit
|
commitdiff
|
tree
2018-02-08
Mark Abraham
Use m
o
re portab
l
e p
y
t
ho
n
shebangs
commit
|
commitdiff
|
tree
2018-02-08
M
a
rk Abraham
M
e
rg
e
"Merge branch
releas
e
-
2
0
16 int
o
release-20
1
8
.
.
.
commit
|
commitdiff
|
tree
2018-02-08
M
a
r
k Abraha
m
Merge branch release-2016 into
release-2018
commit
|
commitdiff
|
tree
2018-02-08
Mark Abraha
m
M
e
rge "Merge br
a
nch
'
release-2018' int
o
master"
commit
|
commitdiff
|
tree
2018-02-06
Mark
A
bra
h
am
Preven
t
log file ene
r
g
y
average pri
n
ting dividing by
.
.
.
commit
|
commitdiff
|
tree
2018-02-06
M
a
rk Abraham
Us
e
isfinite unambiguously
commit
|
commitdiff
|
tree
2018-01-30
Mark Abraham
Replace macros for multi-
s
im
commit
|
commitdiff
|
tree
2018-01-30
Mark Ab
r
a
h
am
Update GoogleT
e
st to 1
.
8
.
0
commit
|
commitdiff
|
tree
2018-01-27
Mark Abraham
R
emo
v
e un
u
sed declaration
commit
|
commitdiff
|
tree
2018-01-25
Mark
A
br
a
h
a
m
Remove unuse
d
fields of t_commrec
commit
|
commitdiff
|
tree
2018-01-25
Mark Abraham
R
educe
d
includes of comm
o
n headers i
n
heade
r
s
commit
|
commitdiff
|
tree
2018-01-25
Mark Abraha
m
Removed mdrun -multi
commit
|
commitdiff
|
tree
2018-01-24
M
a
rk Abraham
Cha
n
g
e
m
ulti-
s
im tests to use -multid
i
r
commit
|
commitdiff
|
tree
2018-01-24
Mark Ab
r
a
h
am
Remove g
m
x
_
inl
i
ne
commit
|
commitdiff
|
tree
2018-01-24
Mark A
b
ra
h
am
Teach include
s
orter to ignore cm
a
ke-test
f
iles
commit
|
commitdiff
|
tree
2018-01-24
Mark
A
b
raham
Mo
v
e Windows icc config to post-submit
t
est
i
ng
commit
|
commitdiff
|
tree
2018-01-24
M
a
rk Abraham
Replace gmx_bool wit
h
bool in bitm
a
sk f
u
nctions
commit
|
commitdiff
|
tree
2018-01-23
Mark
Abr
a
h
a
m
R
emov
e
support for
implici
t
so
l
v
ati
o
n
commit
|
commitdiff
|
tree
2018-01-23
M
a
rk Abraham
Re
m
ove to
p
ology supp
o
rt for implicit solvatio
n
commit
|
commitdiff
|
tree
2018-01-23
M
a
r
k
A
b
raham
Preliminary
c
l
eanup
bef
o
re
r
emovin
g
i
fdef cpluspl
u
s
commit
|
commitdiff
|
tree
2018-01-19
Mark Abraham
Merge "Merge branch 'release-2018' into master"
commit
|
commitdiff
|
tree
2018-01-19
Mark Abrah
a
m
Add dev-guide docs for au
t
o
matic update of regression
t
e
s
t
s
commit
|
commitdiff
|
tree
2018-01-19
Mark Abraham
Fixes
f
or issues f
o
und by clan
g
6
commit
|
commitdiff
|
tree
2018-01-18
Mar
k
Abrah
a
m
Bum
p
versi
o
n numbers
for
2
0
19
d
evelopment
commit
|
commitdiff
|
tree
2018-01-18
M
ar
k
Abrah
a
m
Rem
o
v
e
support for BlueG
e
ne
commit
|
commitdiff
|
tree
2018-01-18
Mark A
b
r
a
h
a
m
Port thread-MPI
t
o com
p
ile as C++
commit
|
commitdiff
|
tree
2018-01-16
Mark Abraham
Merge "
M
erge release-2018 i
n
t
o
master
"
commit
|
commitdiff
|
tree
2018-01-11
Mark Abraham
Remove contri
b
directory
commit
|
commitdiff
|
tree
2018-01-11
Mark Abraham
Bum
p
ed
version for ne
x
t
p
a
tch re
l
eas
e
commit
|
commitdiff
|
tree
2018-01-11
Mark Abraham
Versi
o
n 2018
commit
|
commitdiff
|
tree
2018-01-11
Mark
A
braham
Announce in user l
o
g
f
iles t
h
at features ar
e
deprecated
.
commit
|
commitdiff
|
tree
2018-01-10
M
a
rk Abraham
Fi
x
auto
m
ated GPU ID
a
ssignment
commit
|
commitdiff
|
tree
2018-01-10
Mar
k
Abraham
Add rel
e
ase
n
ote
s
to source repo
commit
|
commitdiff
|
tree
2018-01-10
Mark Abr
a
ham
H
andle erroneous command
l
i
ne args
better
commit
|
commitdiff
|
tree
2018-01-09
M
ark Abraha
m
D
e
activate autoselect of PM
E
on GPU o
n
sep
a
rate rank
commit
|
commitdiff
|
tree
2018-01-09
Mark Abr
a
ham
Clean up
user guide
f
or release
commit
|
commitdiff
|
tree
2018-01-09
Mark Abraham
Merge branch r
e
lease-2016 i
n
to release-2018
commit
|
commitdiff
|
tree
2018-01-05
Mark Abraham
R
emove FindCUDA from source tarba
l
l
commit
|
commitdiff
|
tree
2018-01-04
Ma
r
k A
b
rah
a
m
Merg
e
branch relea
s
e-2
0
18
commit
|
commitdiff
|
tree
2018-01-04
Mark Abrah
a
m
Ad
d
test config of G
P
U build on slav
e
without GPU
commit
|
commitdiff
|
tree
2018-01-03
Ma
r
k
A
braham
Add cool quot
e
commit
|
commitdiff
|
tree
2018-01-03
Mark Abraham
Fix dupli
c
ate wa
r
ning
commit
|
commitdiff
|
tree
2018-01-02
M
a
r
k Abraham
Fix
m
e
mbed by
c
alling the proper mtop fina
l
ization
.
.
.
commit
|
commitdiff
|
tree
2017-12-30
Mar
k
Abraham
First release candida
t
e for vers
i
on
2
018
commit
|
commitdiff
|
tree
2017-12-29
Mark
A
braham
S
e
parat
e
canDetectG
p
us
a
nd fin
d
Gpus futher, and fix
.
.
.
commit
|
commitdiff
|
tree
2017-12-27
Mark Abrah
a
m
Silence POWE
R
8 compiler
w
a
rni
n
gs
commit
|
commitdiff
|
tree
2017-12-22
Mark Ab
r
a
ham
Mer
g
e branch re
l
ease-2016 in
t
o release-2
0
18
commit
|
commitdiff
|
tree
2017-12-21
M
a
rk A
b
raham
Mer
g
e bra
n
ch
r
elease-5-1 into rel
e
ase-2016
commit
|
commitdiff
|
tree
2017-12-21
Mark
A
braham
Bump
minor version for theoretica
l
new release
commit
|
commitdiff
|
tree
2017-12-21
M
a
r
k Abraham
Update double
-
p
recision test configurat
i
ons
commit
|
commitdiff
|
tree
2017-12-21
Mark Abraham
Versi
o
n 5
.
1
.
5
commit
|
commitdiff
|
tree
2017-12-20
Mark
A
braha
m
Use new defa
u
lt
R
ealTolerance() to sta
b
ili
s
e s
o
me tests
commit
|
commitdiff
|
tree
2017-12-20
Mark
A
braham
Merg
e
"Merge branch r
e
lea
s
e
-
2
0
16 into releas
e
-2
0
18
.
.
.
commit
|
commitdiff
|
tree
2017-12-20
Mark
Ab
r
aham
Merge branch release-201
6
into release-201
8
commit
|
commitdiff
|
tree
2017-12-19
Mar
k
Abraham
Third bet
a
rel
e
ase
of 2
0
1
8
commit
|
commitdiff
|
tree
2017-12-19
Ma
r
k
A
braham
Fi
x
t
a
ble
tests and i
m
prove ta
b
le
constructio
n
commit
|
commitdiff
|
tree
2017-12-15
Mark Ab
r
aham
M
a
ke OpenC
L
implementatio
n
of g
p
u_
u
tils tests conform
commit
|
commitdiff
|
tree
2017-12-14
Mark Abrah
a
m
A
v
o
i
d co
n
fusing m
e
ss
a
ge at end of non-dynamical
r
uns
commit
|
commitdiff
|
tree
2017-12-14
M
a
rk
Ab
r
aha
m
Fix
r
etu
r
n valu
e
s of f
r
ame-reading functions
commit
|
commitdiff
|
tree
2017-12-14
M
a
r
k Abra
h
am
Make AVX-512 CMake detction work
commit
|
commitdiff
|
tree
2017-12-14
Mark
A
braham
M
e
r
ge "Me
r
g
e
branc
h
release-2016 int
o
release
-
2018
.
.
.
commit
|
commitdiff
|
tree
2017-12-12
Mark Abraha
m
I
m
prove grompp missi
n
g-parameter
s
err
o
r message
commit
|
commitdiff
|
tree
2017-12-12
Ma
r
k Abr
a
ham
Merge branch release-2016 into release-2018
commit
|
commitdiff
|
tree
2017-12-11
Mark Abraham
Second beta release o
f
2018
commit
|
commitdiff
|
tree
2017-12-11
Mar
k
A
b
raham
L
eave NV
M
L
u
se
off by
default
commit
|
commitdiff
|
tree
2017-12-11
Mark Abrah
a
m
Check for GPU dete
c
tion
s
upport before detecting
commit
|
commitdiff
|
tree
2017-12-11
Mark Abraham
C
onsume any error produced dur
i
n
g GPU detection
commit
|
commitdiff
|
tree
2017-12-11
Mark Abra
h
am
Avoid sig
n
ed-ov
e
rflow warning with gcc 7
commit
|
commitdiff
|
tree
2017-12-11
Mark Abr
a
ha
m
Remov
e
SI
M
D
shift operators
commit
|
commitdiff
|
tree
2017-12-08
Mark Abraham
Refine ulp to
l
erances for some mo
r
e ewald tes
t
s
commit
|
commitdiff
|
tree
2017-12-05
Mar
k
Abraham
Fix mdrun -nb auto
-pme auto whe
n
GPUs
are
a
bs
e
nt
commit
|
commitdiff
|
tree
2017-12-05
Mark Abrah
a
m
Update test
i
ng to inclu
d
e cmake 3
.
1
0
.
0
commit
|
commitdiff
|
tree
2017-12-04
Mar
k
Abra
h
am
Fix free_gpu
commit
|
commitdiff
|
tree
2017-12-04
Mark
A
b
r
aham
Fix un
u
sed var
i
ables in CPU
pruning kern
e
ls
commit
|
commitdiff
|
tree
2017-12-04
Mark Abr
a
h
a
m
Merge branch release-2016 i
n
to r
e
l
ease
-
2018
commit
|
commitdiff
|
tree
2017-12-03
Mark Abraham
Fix
f
f
t5d pi
n
ning
commit
|
commitdiff
|
tree
2017-11-28
Mark Abraham
G
R
O
M
ACS 2018 first beta r
e
l
ease
commit
|
commitdiff
|
tree
2017-11-24
Mark Abraham
Update developer guide
commit
|
commitdiff
|
tree
2017-11-24
Mark Abraham
A
c
tivate PME on GPUs
commit
|
commitdiff
|
tree
2017-11-24
Mark
A
b
r
a
ham
Separ
a
te
manag
e
ment of
GPU cont
e
xts from
m
odules
commit
|
commitdiff
|
tree
2017-11-24
Mark
Ab
r
aha
m
Add PME integration test
commit
|
commitdiff
|
tree
2017-11-24
Mark
A
b
raham
Extend tas
k
a
s
signm
e
nt
c
ode
commit
|
commitdiff
|
tree
2017-11-21
Mar
k
A
b
raham
Us
e
much less Pad
d
e
dRVecVe
c
tor and more ArrayRef of
.
.
.
commit
|
commitdiff
|
tree
2017-11-21
Ma
r
k Abraham
Support pinning in HostAllo
c
ator
commit
|
commitdiff
|
tree
2017-11-20
Mark Abraham
Fix nig
h
tly ma
t
rix config
commit
|
commitdiff
|
tree
2017-11-19
M
a
rk A
b
ra
h
am
Fix FindCUDA
.
cmake for -Wundef
commit
|
commitdiff
|
tree
2017-11-17
M
a
r
k
A
braham
U
s
e
H
ostAl
l
ocationPol
i
cy
for charge
A
commit
|
commitdiff
|
tree
2017-11-17
M
a
rk Abraham
Add che
c
k
ing fu
n
c
t
i
o
n fo
r
whe
t
h
er
a
buff
e
r
is pinned
commit
|
commitdiff
|
tree
2017-11-17
Mark Abraham
Impr
o
ve h
a
ndli
n
g of PME GPU force
buffer
commit
|
commitdiff
|
tree
2017-11-10
Mark Abraham
Import cm
a
ke Modul
e
s
/
FindCUDA
.
cm
a
ke
commit
|
commitdiff
|
tree
2017-11-09
Mark Abraham
Prepared t
_
mdatoms for using vector
commit
|
commitdiff
|
tree
2017-11-09
Mark
A
braha
m
Intr
o
d
u
ce HostAllocationPoli
c
y
commit
|
commitdiff
|
tree
2017-11-07
Mark Abra
h
am
Reform gmx
_
pme_pp a
l
loc and u
s
e vector
commit
|
commitdiff
|
tree
2017-11-07
Mark Abra
h
am
Introduce g
m
xopencl
.
h
commit
|
commitdiff
|
tree
next