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Update rules for release-2021.
2020-11-11
Szilárd
P
áll
Fi
x
gcc 9 "warning: ‘u
n
use
d
’ attribute ignored"
commit
|
commitdiff
|
tree
2020-11-10
Szilárd
P
ál
l
GPU codepath cycle counting f
i
x
e
s
commit
|
commitdiff
|
tree
2020-11-09
Sz
i
lá
r
d Páll
Fix cycl
e
coun
t
ing in StatePropagatorDataGpu
commit
|
commitdiff
|
tree
2020-11-03
S
z
ilárd Páll
Add missing wallcycle_sto
p
commit
|
commitdiff
|
tree
2020-10-30
Szilárd P
á
ll
Cla
n
g form
a
t
commit
|
commitdiff
|
tree
2020-10-30
Sz
i
l
ár
d
Páll
Ad
d
fvec doxygen
commit
|
commitdiff
|
tree
2020-10-30
Szilár
d
Páll
Fix AMD
O
penCL float3 a
r
ray optimization b
u
g
commit
|
commitdiff
|
tree
2020-10-27
Szi
l
árd Páll
Fix
c
l
a
ng-tidy v10 war
n
igns i
n
OpenCL kernels
commit
|
commitdiff
|
tree
2020-10-24
Szilárd Páll
Exclude CUDA 10
.
2
a
s well from C++17 com
p
i
l
ation
commit
|
commitdiff
|
tree
2020-10-22
Szilárd Páll
Add missing GPU
force reduct
i
o
n cycle
c
ounting
commit
|
commitdiff
|
tree
2020-10-21
Sz
i
l
á
rd
Páll
Add missing cycle coun
t
i
n
g for G
P
U
halo ex
c
hange
c
alls
commit
|
commitdiff
|
tree
2020-10-20
Szilárd Páll
All
o
w gcc-9 o
n
Power 9
commit
|
commitdiff
|
tree
2020-10-09
S
zilá
r
d
Páll
Fi
x
NBLIB C
M
ake error messa
g
e
commit
|
commitdiff
|
tree
2020-10-01
Szilárd Páll
U
p
date mdrun-p
e
rforman
c
e
.
rst
commit
|
commitdiff
|
tree
2020-09-24
S
z
i
lárd Páll
Im
p
rove OpenCL log/
e
rror repo
r
ting
commit
|
commitdiff
|
tree
2020-09-03
Szilárd Páll
Move mixplace
d
release n
o
te
s
entry
commit
|
commitdiff
|
tree
2020-04-12
Szilárd Páll
Fi
x
clang
1
0 -
W
impli
c
it-i
n
t-float-con
v
ersion warnings
commit
|
commitdiff
|
tree
2020-03-19
Szilárd Páll
Fix DLB init
i
al state
report
i
ng
commit
|
commitdiff
|
tree
2020-03-11
Szi
l
ár
d
Páll
Reo
r
g
a
niz
e
dipole ca
l
cu
l
ation in do
_
f
o
r
ce
commit
|
commitdiff
|
tree
2020-02-26
S
zilárd Pál
l
Avoid mdru
n
termin
a
te due to GP
U
sanity check
err
o
rs
commit
|
commitdiff
|
tree
2020-02-26
Szilárd
Páll
Do
c
ument NV
I
DIA
O
p
e
nC
L
broken on Vo
l
ta a
n
d
T
uring
commit
|
commitdiff
|
tree
2020-02-26
Szilárd Páll
Remove outdate
d
PME-GPU
l
imit
a
tio
n
in user g
u
ide
commit
|
commitdiff
|
tree
2020-02-25
Szi
l
árd Páll
Im
p
rove GPU update task
s
assignme
n
t
c
ons
i
stency
commit
|
commitdiff
|
tree
2020-02-17
Szilá
r
d
Páll
Add simulation workload flag for dipole computation
commit
|
commitdiff
|
tree
2020-02-15
Szilárd Páll
Fix gpu
u
dpate and gpucomm matrix do
c
s
commit
|
commitdiff
|
tree
2020-02-11
Sz
i
lárd
P
á
ll
Fix inc
o
rrect GPU upda
t
e
t
ask assignment
fallb
a
ck
commit
|
commitdiff
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tree
2020-02-10
S
zil
á
rd
Páll
Av
o
id dev flags i
n
tri
g
gering gpuupd
a
te nightly m
a
trix
commit
|
commitdiff
|
tree
2020-02-10
Szilár
d
Páll
Av
o
id (re)initializin
g
GP
U
update without DD
commit
|
commitdiff
|
tree
2020-02-06
S
zilárd
P
á
ll
Remove mu_tot
from
c
ompute_glob
a
ls()
commit
|
commitdiff
|
tree
2020-01-31
Szilárd Páll
Eliminate
t
he legac
y
Flags
manipulation in do_force()
commit
|
commitdiff
|
tree
2020-01-31
S
zilárd P
á
ll
Remove
B
ufferOpsUseGpu enum
commit
|
commitdiff
|
tree
2020-01-29
Szi
l
árd Páll
Small i
m
provement in Op
e
nCL er
r
or handling
commit
|
commitdiff
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tree
2020-01-24
Szilárd Páll
Ad
d
t
arget for offline PM
E
OpenCL compilatio
n
commit
|
commitdiff
|
tree
2020-01-24
Szi
l
árd Pál
l
Fix deadlock in PP-PM
E
bal
a
ncing star
t
up delay
commit
|
commitdiff
|
tree
2020-01-19
S
z
ilárd Pál
l
Tem
p
late X
b
u
f
fer ops on se
t
Filler
C
oords
commit
|
commitdiff
|
tree
2020-01-16
Szilárd Páll
Fix
P
ME run
mode with
o
ut PME
commit
|
commitdiff
|
tree
2020-01-10
S
z
ilárd Páll
Improve
m
drun pe
r
fo
r
mance us
e
r guide
commit
|
commitdiff
|
tree
2019-12-20
Szilárd Páll
Enable buf
f
e
r ops wh
e
n GMX_G
P
U_DD_
C
OMMS is set
commit
|
commitdiff
|
tree
2019-12-19
Szilárd
Pál
l
PP-PME load balancing improvements
commit
|
commitdiff
|
tree
2019-12-18
Szi
l
árd Páll
Allow
x
D2H to ove
r
lap with GPU force compute
commit
|
commitdiff
|
tree
2019-12-17
Szilárd Páll
Com
m
ent the use of wa
i
t
Coord
i
n
a
tesCopiedToDevice
commit
|
commitdiff
|
tree
2019-12-17
Szilárd Páll
A
dd wal
l
c
y
c
le counting to State
P
ropagatorDataG
p
u
commit
|
commitdiff
|
tree
2019-12-16
Szilá
r
d Páll
Fix the GPU bonded stream with 1 PP +
1
PME rank
commit
|
commitdiff
|
tree
2019-12-12
Szilá
r
d Páll
Al
l
ow overlapp
i
ng CPU f
o
rce
H2D
with compute
commit
|
commitdiff
|
tree
2019-11-17
S
zilárd
P
áll
Trigger ocl
_
nbnxm_ker
n
els target with clang-tidy
commit
|
commitdiff
|
tree
2019-11-17
Sz
i
lárd Páll
Fi
x
clang
-
tidy 8
w
arnin
g
s in OpenCL nbnxm kernels
commit
|
commitdiff
|
tree
2019-11-03
Szi
l
árd P
á
ll
Impro
v
e
S
imulationWork
l
oad doxygen
commit
|
commitdiff
|
tree
2019-11-01
Szilárd P
á
l
l
Rename refer
e
nce check
s
um ge
n
erat
i
ng target
commit
|
commitdiff
|
tree
2019-11-01
Szilá
r
d Páll
U
se "-" in checksum-related versio
n
suffix
commit
|
commitdiff
|
tree
2019-11-01
Szilárd Páll
Impr
o
ve w
o
r
k
load data st
r
u
c
tures' doc
s
commit
|
commitdiff
|
tree
2019-10-28
S
zilárd Páll
Extend SimulationWo
r
k
l
oad
with
CPU flags
commit
|
commitdiff
|
tree
2019-10-21
Szi
l
árd Páll
R
emove unsupported con
f
igs from the g
p
uupdate matrix
commit
|
commitdiff
|
tree
2019-10-21
Szi
l
árd
Páll
Override GMX_GPU_DD_COMMS if nonbonded
s
ar
e
o
f
f
commit
|
commitdiff
|
tree
2019-10-18
Szilárd
Páll
Add stri
c
t assertions on x synchr
o
nize
r
in PME
commit
|
commitdiff
|
tree
2019-10-18
Szilárd Páll
Fix genion
c
l
ang-8 war
n
ing
commit
|
commitdiff
|
tree
2019-10-17
Szilárd Páll
Fi
x
clang
-
tidy warnings in g
p
uhaloexchange_impl
.
cuh
commit
|
commitdiff
|
tree
2019-10-17
Szilá
r
d
P
áll
Eli
m
inate spurious GPU->CPU co
p
y
commit
|
commitdiff
|
tree
2019-10-17
Szil
á
rd Páll
Disab
l
e
GMX_GP
U
_PME_PP_COMMS if
P
ME is n
o
t o
f
floaded
commit
|
commitdiff
|
tree
2019-10-16
Szilárd
P
áll
Fix initializatio
n
of
f
i
e
ld
in PME data structure
commit
|
commitdiff
|
tree
2019-10-16
Szilá
r
d Pál
l
Make th
e
wait on
nonbo
n
ded GP
U
results
condition
a
l
commit
|
commitdiff
|
tree
2019-10-15
Szilárd Páll
T
r
igger synchronizer w
h
en local force
s
are ready
commit
|
commitdiff
|
tree
2019-10-15
Szilárd Páll
Lin
k
G
PU coordina
t
e prod
u
cer and consume
r
tasks
commit
|
commitdiff
|
tree
2019-10-13
Szi
l
árd
P
áll
Enable StatePropaga
t
o
rGpuData f
o
r force transfers
commit
|
commitdiff
|
tree
2019-10-13
S
zilárd Pál
l
Move b
u
ffer
o
ps / PME F reduction fl
a
gs into Step
W
orkload
commit
|
commitdiff
|
tree
2019-10-10
Szi
l
árd
P
áll
M
i
g
r
a
te c
o
de to u
s
ing SimulationWo
r
kl
o
ad flags
commit
|
commitdiff
|
tree
2019-10-10
Szilárd Páll
R
emove incorrect GPU task
dependen
c
y
commit
|
commitdiff
|
tree
2019-10-10
S
zilárd Páll
Fix c
o
nditions for buildi
n
g St
a
teProp
a
gatorDataG
p
u
commit
|
commitdiff
|
tree
2019-10-10
Szilárd Páll
C
onstru
c
t a
struct with development feature flags
commit
|
commitdiff
|
tree
2019-10-10
Szilárd Páll
Pas
s
list of EventSynchronizer
s
to GPU re
d
uc
t
ion
commit
|
commitdiff
|
tree
2019-10-10
Szilár
d
Pá
l
l
A
dd ma
n
a
g
e
ment f
o
r coord
i
nates copy event
s
i
nto
S
t
a
tePropaga
.
.
.
commit
|
commitdiff
|
tree
2019-10-09
Szil
á
r
d
Páll
Add GPU event
t
o
m
ark that co
o
rd
i
na
t
e up
d
ate is done
commit
|
commitdiff
|
tree
2019-09-30
Szilárd Páll
Move PME
G
PU pr
o
gram building
l
ater
commit
|
commitdiff
|
tree
2019-09-30
Szi
l
á
r
d Páll
Mak
e
the wait on PM
E
GPU re
s
ult
s
condi
t
i
onal
commit
|
commitdiff
|
tree
2019-09-27
Szilárd
Páll
Sw
i
tch
G
PU update
off by defau
l
t
commit
|
commitdiff
|
tree
2019-09-25
Szilárd Páll
M
e
rge remote-trac
k
ing branch 'origin/relea
s
e-2019'
commit
|
commitdiff
|
tree
2019-09-18
Szilár
d
P
áll
Set up
workload data struct
u
res
commit
|
commitdiff
|
tree
2019-09-16
Szilár
d
Páll
R
e
f
actor GP
U
b
u
f
o
p
s-related
l
aunches
i
n
do_for
c
e()
commit
|
commitdiff
|
tree
2019-09-16
S
zilárd Pá
l
l
Eliminate un
n
eces
s
ary GPU
stream dependen
c
y call
commit
|
commitdiff
|
tree
2019-09-13
Sz
i
lárd Páll
F
ix GPU X
buffer ops
with
e
mpty doma
i
n
commit
|
commitdiff
|
tree
2019-09-12
Szilárd Pál
l
Reorgan
i
z
e on-GPU PME
f
or
c
e red
u
cti
o
n flag
h
a
ndling
commit
|
commitdiff
|
tree
2019-09-11
Szilárd P
á
l
l
Fix
g
pucomm matrix
commit
|
commitdiff
|
tree
2019-09-10
Szilárd Páll
Eliminate ra
w
fo
r
ce
flags in
do_for
c
e_lowlevel
(
)
commit
|
commitdiff
|
tree
2019-09-10
S
zil
á
rd Páll
Use thread-
M
PI in the gpu
c
om
m
m
a
t
r
ix
commit
|
commitdiff
|
tree
2019-09-09
Szilárd
P
áll
Assert the types of OpenCL ke
r
n
e
ls argume
n
ts
commit
|
commitdiff
|
tree
2019-09-09
Szilá
r
d Páll
Pass gmx::ForceFlags to
C
P
U nbnxm dispatc
h
c
od
e
commit
|
commitdiff
|
tree
2019-09-09
Szilár
d
Pál
l
P
a
ss
t
he new
g
m
x:
:
ForceFlags to
t
he nbnxm mod
u
le
commit
|
commitdiff
|
tree
2019-09-06
S
z
ilárd Pá
l
l
Add gpuupdate
and g
p
ucom
m
O
n
D
emand tokens
commit
|
commitdiff
|
tree
2019-09-04
Szilárd
P
áll
Bump ARM HPC toolchain in pos
t
-su
b
m
i
t to v1
9
.
3
commit
|
commitdiff
|
tree
2019-09-04
Szilárd Páll
Add back a
clang-tidy exc
e
pt
i
on
commit
|
commitdiff
|
tree
2019-09-04
Sz
i
lárd Páll
Cen
t
ralize more MD/force shedule flags
commit
|
commitdiff
|
tree
2019-08-28
Szilár
d
P
á
ll
Add
c
lang-t
i
dy nigh
t
ly
test wi
t
h SIMD + Open
C
L
commit
|
commitdiff
|
tree
2019-08-28
S
z
ilárd Pál
l
Move nonbon
d
e
d
G
PU wait
timing in
t
o the GPU modul
e
commit
|
commitdiff
|
tree
2019-08-25
Szil
á
rd Páll
clan
g
-tidy 8 fixes f
o
r the GPU host code-path
commit
|
commitdiff
|
tree
2019-08-25
S
zilárd Páll
F
u
rther fixes for clan
g
-tidy clang version
8
commit
|
commitdiff
|
tree
2019-08-23
Szilárd Páll
F
i
x c
l
ang-
t
id
y
warn
i
ngs in the
O
penCL build
commit
|
commitdiff
|
tree
2019-08-23
Szilárd Páll
Fix clan
g
tidy warnings in CUDA build
commit
|
commitdiff
|
tree
2019-08-19
Szilár
d
P
áll
Bump clang-cuda post-submit
c
ompiler/CUDA
ve
r
si
o
n
commit
|
commitdiff
|
tree
2019-08-19
Szi
l
árd
P
ál
l
Swit
c
h to ARM
H
PC
t
oo
l
chain v1
9
.
2
in
post-s
u
bmit
commit
|
commitdiff
|
tree
2019-08-19
Szilárd Páll
Wo
r
k around clang CUDA device code codeg
e
n bug
commit
|
commitdiff
|
tree
2019-08-16
Szil
á
rd Páll
Fix sim
_
util
.
c
p
p c
o
pyri
g
ht header
commit
|
commitdiff
|
tree
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