Add conserved q. for PR and Berendsen T-couple
commit45f300315fc92ab8c281440b9fb9ad8ece8d4684
authorBerk Hess <hess@kth.se>
Tue, 16 Aug 2016 11:55:24 +0000 (16 13:55 +0200)
committerKasson <kasson@gmail.com>
Tue, 23 May 2017 12:17:42 +0000 (23 14:17 +0200)
tree0a66951a3b85b86c1b4618fdaaf8c177528f835b
parent4af4dbb7c2dfc4aaefc419e58820ad5abac80cff
Add conserved q. for PR and Berendsen T-couple

Added the conserved energy quantities for Parrinello-Rahman
pressure coupling and Berendsen temperature coupling.
Note that this makes it impossible to checkpoint continue or
concatenate energy files from older runs with these coupling
algorithms.
Added corresponding formulas to the manual.

Change-Id: I1527592711f7c9d8fe6e2f7dbe325c8d3356e6bf
docs/manual/algorithms.tex
src/gromacs/fileio/checkpoint.cpp
src/gromacs/mdlib/coupling.cpp
src/gromacs/mdlib/md_support.cpp
src/gromacs/mdlib/mdebin.cpp
src/gromacs/mdlib/update.cpp
src/gromacs/mdlib/update.h
src/gromacs/mdtypes/inputrec.cpp
src/gromacs/mdtypes/inputrec.h
src/programs/mdrun/md.cpp