shuffle: use common fasta reader, upcase sequences, code cleanups
tree8e6b28b8c93dc83544ade388fbd22cc4b54dce6b
-rw-r--r-- 54 .gitignore
-rw-r--r-- 35147 COPYING
-rw-r--r-- 2869 Makefile
-rw-r--r-- 1929 NOTES
-rw-r--r-- 212 README
-rw-r--r-- 6733 TODO
-rw-r--r-- 30067 cgreylag.cpp
-rw-r--r-- 10883 cgreylag.hpp
-rw-r--r-- 3159 cgreylag.i
drwxr-xr-x - doc
-rw-r--r-- 1081 example.conf
-rw-r--r-- 15831 greylag.py
-rwxr-xr-x 6157 greylag_censor_database.py
-rwxr-xr-x 31396 greylag_chase.py
-rwxr-xr-x 6125 greylag_merge.py
-rwxr-xr-x 38322 greylag_rally.py
-rwxr-xr-x 3776 greylag_shuffle_database.py
-rwxr-xr-x 12461 greylag_sqt.py
-rwxr-xr-x 31652 greylag_validate.py
drwxr-xr-x - test