* Fix some subtle but significant bugs in peak scoring and validation. These
were found by comparing greylag and MyriMatch results. Greylag's results
are now more similar to those of MyriMatch.
* New program ``greylag-call-proteins`` takes the validated peptide list from
``greylag-validate`` and assigns them to specific protein groups using the
parsimony criterion.
* New filter flags to ``greylag-validate`` to support high-accuracy spectra
(e.g., Orbitrap). This should help greylag to more often correctly
distinguish between, for example, trimethlyation, acetylation, and
carbamylation.
The new ``-exact-ptms`` flag supports validation of specific peptide
modifications, as opposed to the peptide in general (with whatever
modifications).
The ``--bootstrap`` flag provides a rough estimation of validation
variance.
* Better performance on single hosts.
* More documentation.
* Many other bug fixes and improvements.