Remove deprecated OPTION_BOOLEAN for parsing arguments

Remove deprecated OPTION_BOOLEAN for parsing arguments

As of b04ba2bb4 OPTION_BOOLEAN was deprecated.
This commit removes all occurrences of OPTION_BOOLEAN.
In b04ba2bb4 Junio suggested to replace it with either
OPTION_SET_INT or OPTION_COUNTUP instead. However a pattern, which
occurred often with the OPTION_BOOLEAN was a hidden boolean parameter.
So I defined OPT_HIDDEN_BOOL as an additional possible parse option
in parse-options.h to make life easy.

The OPT_HIDDEN_BOOL was used in checkout, clone, commit, show-ref.
The only exception, where there was need to fiddle with OPTION_SET_INT
was log and notes. However in these two files there is also a pattern,
so we could think of introducing OPT_NONEG_BOOL.

Signed-off-by: Stefan Beller <stefanbeller@googlemail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>