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Updating Mauricio's email
2014-12-18
Francisco J
.
Ossandon
St
a
ndAloneBla
s
t
P
lus:
I
mproved 'db_info' A
l
g
orithm ID
.
.
.
commit
|
commitdiff
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tree
2014-12-18
Francisco
J
.
Ossand
o
n
Added M
Y
META
.
json to
.
gitignore
commit
|
commitdiff
|
tree
2014-09-01
Francisco J
.
Ossand
o
n
WBCommandExts
.
t: Fixed a
p
e
nding T
O
DO relate
d
to
commit
|
commitdiff
|
tree
2014-08-22
F
rancisco J
.
Ossandon
Remove
d
empty
f
i
l
e Bio/Tools/Run/hmmer3
.
pm,
w
hich seems
commit
|
commitdiff
|
tree
2014-07-31
Francisco
J
.
Ossand
o
n
M
erge bra
n
ch
'
mas
t
er' of htt
p
s://gith
u
b
.
com/bioperl
.
.
.
commit
|
commitdiff
|
tree
2014-05-16
Francisco J
.
Ossandon
Merge pull reques
t
#
71 from n
a
thanweeks/i
s
s
u
e/bio
-
seqfeature
.
.
.
commit
|
commitdiff
|
tree
2014-05-08
Francis
c
o J
.
Ossandon
M
e
rge pull requ
e
s
t
#67 f
r
om stu2/m
a
ster
commit
|
commitdiff
|
tree
2014-05-08
Francisco J
.
Os
s
a
nd
o
n
Merg
e
pu
l
l reque
s
t
#68
from tsibley/readline-ret
u
rn
.
.
.
commit
|
commitdiff
|
tree
2014-04-30
Franc
i
s
co J
.
Ossandon
R
e
m
oteB
l
ast_rpsblast
.
t
:
Fixe
d
a few numbe
r
of
s
kipped
.
.
.
commit
|
commitdiff
|
tree
2014-04-29
Fra
n
cisco J
.
Ossandon
RemoteBl
a
st
.
t:
F
i
x
ed sever
a
l
num
b
er
of
s
k
i
p
ped
te
s
t
s
,
commit
|
commitdiff
|
tree
2014-03-27
Francisco
J
.
Ossandon
Mer
g
e
p
ull requ
e
st #66 from
nathanw
e
eks/sqlite_collate_nocase
commit
|
commitdiff
|
tree
2014-02-28
F
ranci
s
co J
.
Ossandon
Massive check of file open lines
.
Changed
b
areword
.
.
.
commit
|
commitdiff
|
tree
2014-02-25
Francisc
o
J
.
Oss
a
ndon
M
e
rge pull
re
q
uest #65 from Marti
n
McGrath/master
commit
|
commitdiff
|
tree
2014-01-28
F
ranc
i
sco J
.
O
s
s
a
n
d
on
Mer
g
e
p
ul
l
r
equest #6
3
from yschensandiego/patch-1
commit
|
commitdiff
|
tree
2014-01-28
Fr
a
nc
i
sco
J
.
Ossandon
Me
r
ge pu
l
l
reque
s
t #64 from ys
c
hensan
d
ie
g
o/patch-2
commit
|
commitdiff
|
tree
2013-12-31
F
rancisco
J
.
Os
s
an
d
on
Com
m
andExts: My mistake, double-quotes in exe path
.
.
.
commit
|
commitdiff
|
tree
2013-12-30
Francisco J
.
Ossandon
StandAloneBlas
t
&
C
ommandExt
s
: Apply d
o
uble-quotes
on
commit
|
commitdiff
|
tree
2013-12-28
Francisco J
.
O
s
sandon
I'm not sur
e
if th
e
se pro
g
r
a
ms will ru
n
on Wi
n
dows now
commit
|
commitdiff
|
tree
2013-12-27
Francisco J
.
Ossandon
Windows use 'NUL' instead of '/dev/null', so ad
d
ed
.
.
.
commit
|
commitdiff
|
tree
2013-12-27
F
ran
c
isco J
.
Os
s
and
o
n
Added a way
to find the required files
i
n
Win
d
ows using
.
.
.
commit
|
commitdiff
|
tree
2013-12-27
F
r
anc
i
s
c
o J
.
Ossandon
Hmmer
:
Prev
e
nt errors caused by
t
h
e prese
n
ce
o
f whitespa
c
e
commit
|
commitdiff
|
tree
2013-12-27
Fran
c
isc
o
J
.
Ossandon
Bowtie
.
t: "qx/ulimit
-
n 3>&-/" does n
o
t w
o
rk a
s
inte
n
d
e
d
.
.
.
commit
|
commitdiff
|
tree
2013-12-19
Franc
i
s
c
o J
.
Ossandon
Changed "cat"
to "find" to be
u
s
ed as a
n
exam
p
le of
commit
|
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|
tree
2013-12-19
Francisco
J
.
Ossandon
RemoteBlast
.
t: Increased
a
l
i
ttle the
d
elay betwe
e
n
.
.
.
commit
|
commitdiff
|
tree
2013-12-14
Francisco J
.
O
ss
a
ndon
As
s
emblerBase
.
p
m
: I
n
"reset_parame
t
e
r
s"
,
adde
d
an intermedia
.
.
.
commit
|
commitdiff
|
tree
2013-12-13
Fra
n
cisco J
.
Ossan
d
o
n
BWA
.
t, Bowtie
.
t
, Maq
.
t &
S
am
t
ools
.
t: Moved tests using
commit
|
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|
tree
2013-12-13
Francisc
o
J
.
Ossandon
A
n
al
y
sisFactory_
s
oa
p
.
t & Analysis
_
soap
.
t
: Changed tests
.
.
.
commit
|
commitdiff
|
tree
2013-12-12
Francisco J
.
Ossand
o
n
Bu
i
l
d
.
PL & MYM
E
TA
.
jso
n
: Added SOAP::Lite v
0
.
716 in
commit
|
commitdiff
|
tree
2013-12-12
F
ranc
i
sco J
.
O
s
sandon
SoapEU-fu
n
c
tion
.
t
:
Updat
e
d expec
t
ed vers
i
on of a genome
.
.
.
commit
|
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|
tree
2013-12-11
Francisco J
.
Ossandon
Stan
d
AloneBlastPlus
.
pm: Some tempo
r
al f
i
les were not
.
.
.
commit
|
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|
tree
2013-12-11
Franc
i
sco J
.
Ossa
n
d
o
n
SABlastPlu
s
.
t:
Added an
additiona
l
$fac->cleanup for
commit
|
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2013-12-11
F
r
ancisco J
.
Ossan
d
o
n
SABlastPlus
.
t: Some
b
l
2
seq
t
ests
w
ere
giving hits ev
e
n
.
.
.
commit
|
commitdiff
|
tree
2013-12-11
Francisco
J
.
Ossando
n
V
ista
.
t
: Th
e
'
j
a
va Vista 2>&1' command
to determine
.
.
.
commit
|
commitdiff
|
tree
2013-12-11
Fran
c
isco J
.
Ossandon
FastTree
.
t & Ne
i
ghbor
.
t
:
Fix
e
d number of skipped tes
t
s
.
.
.
commit
|
commitdiff
|
tree
2013-12-11
Fran
c
isco J
.
O
s
sandon
BEDTools
.
t
:
Moved
the
fil
e
-find
i
n
g
lines inside the
.
.
.
commit
|
commitdiff
|
tree
2013-12-11
Francisco J
.
Ossan
d
o
n
Blat
.
t: Fixed skipped tests nu
m
b
e
r and removed "$
b
la
t
_
pres
e
nt",
commit
|
commitdiff
|
tree
2013-12-11
Francisc
o
J
.
Ossandon
H
y
phy/Bat
c
hFile
.
p
m:
C
h
anged @validvals[$i]
t
o
$validvals
.
.
.
commit
|
commitdiff
|
tree
2013-12-11
Francis
c
o J
.
Ossando
n
M
A
FFT
.
pm: Fixed an uninitialized warning fr
o
m
commit
|
commitdiff
|
tree
2013-11-20
F
rancis
c
o
J
.
Ossandon
Mer
g
e pull
r
e
quest #54 from
f
jossa
n
don
/
master
commit
|
commitdiff
|
tree
2013-11-08
Francisco J
.
O
ssan
d
on
Merg
e
remote
b
r
anch
'upstrea
m
/
m
a
s
ter' into test
commit
|
commitdiff
|
tree
2013-09-22
Fran
c
isco J
.
Ossa
n
d
on
M
erg
e
remote bra
n
ch
'
upstream/
m
aster'
i
nto t
e
st
commit
|
commitdiff
|
tree
2013-09-17
Francisco J
.
Ossandon
Merge remote branch
'
up
s
tream/mast
e
r' in
t
o
test
commit
|
commitdiff
|
tree
2013-04-18
F
r
ancis
c
o J
.
Ossando
n
Merge remote br
a
nch 'upstream/master'
commit
|
commitdiff
|
tree
2013-04-15
Franc
i
sco J
.
Ossa
n
don
Merge
r
e
mote
b
r
anc
h
'upstream
/
master'
commit
|
commitdiff
|
tree