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add in code to add version to META files
2010-11-05
Chris Fields
in
i
t
i
al checki
n
o
f
r
e
v
a
mped Blat wrapper
commit
|
commitdiff
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tree
2010-08-17
Chri
s
Fields
Merge branch
'
circular'
commit
|
commitdiff
|
tree
2010-08-05
Chris Fields
[bug 29
8
7] remove warning (
p
atch
co
u
rtesy Adam
W
i
tn
e
y
commit
|
commitdiff
|
tree
2010-07-23
C
hris Fields
[RT 58464]
p
atc
h
ing
to
a
l
low f
i
le
names
w
it
h
spaces
commit
|
commitdiff
|
tree
2010-07-23
Chris Fields
Revert
"
add do
t
s
p
aram"
commit
|
commitdiff
|
tree
2010-07-23
C
h
ris Fie
l
ds
add
do
t
s
p
aram
commit
|
commitdiff
|
tree
2010-07-23
Chris Fie
l
d
s
[RT 58464]
patching to
a
llo
w
fil
e
name
s
w
i
th sp
a
ces
commit
|
commitdiff
|
tree
2010-07-23
Ch
r
is Fields
Mer
g
e branch 'topi
c
/cjfields_i
n
te
r
pro
_
get_dbx
r
ef'
commit
|
commitdiff
|
tree
2010-07-05
Ch
r
is
Field
s
small fixes,
b
ut the previous code does work when setting
.
.
.
commit
|
commitdiff
|
tree
2010-07-04
Chris Fields
spelling
commit
|
commitdiff
|
tree
2010-07-03
Chris Fields
Merge branch '
t
o
p
ic
/
species_proxy'
commit
|
commitdiff
|
tree
2010-07-01
Chris Fields
move tests o
v
er to te
m
pfile
u
se (tmpdir not being cleaned up)
commit
|
commitdiff
|
tree
2010-07-01
Chris Field
s
move t
o
tem
p
files for cle
a
nup
commit
|
commitdiff
|
tree
2010-07-01
Chris Fie
l
ds
algorithm can be
S
SEA
R
CH as well;
u
se test_ou
t
put_fi
l
e
.
.
.
commit
|
commitdiff
|
tree
2010-07-01
Chris Fields
contigs off with
U
b
untu packa
g
ed MAQ
commit
|
commitdiff
|
tree
2010-06-30
Chris F
i
elds
no_sequences
-
> num_sequences
commit
|
commitdiff
|
tree
2010-06-30
Chris Fields
s
o
m
e tweaks to get
r
id of war
n
i
n
gs
commit
|
commitdiff
|
tree
2010-06-30
Chris Fields
more robust call to ulimit
commit
|
commitdiff
|
tree
2010-06-30
C
h
ris
F
i
e
ld
s
is
(
),
n
ot ok
(
)
commit
|
commitdiff
|
tree
2010-06-30
C
h
ris Fiel
d
s
ski
p
if version greater than 1
.
2 (old
p
rimer3 code)
commit
|
commitdiff
|
tree
2010-06-30
Chris Fields
add
version() (back
p
ort
f
rom primer3
r
edux)
commit
|
commitdiff
|
tree
2010-06-30
Chri
s
Fie
l
ds
align left
commit
|
commitdiff
|
tree
2010-06-30
Chri
s
Fields
fix odd verbosity-
d
ep
e
nden
t
bug with EMBOSS tes
t
s
commit
|
commitdiff
|
tree
2010-06-30
Chris Fields
add mini
m
a
l
gitignore
commit
|
commitdiff
|
tree
2010-06-30
C
h
ris
F
i
elds
add ul
i
mit
-n check, as these tests fail from too ma
n
y
.
.
.
commit
|
commitdiff
|
tree
2010-06-30
Chris Fields
add email
commit
|
commitdiff
|
tree
2010-06-30
C
hris Fiel
d
s
correct sk
i
pped n
u
mb
e
r of t
e
s
t
s
commit
|
commitdiff
|
tree
2010-06-30
Chris Fiel
d
s
skip test count off, fixe
d
commit
|
commitdiff
|
tree
2010-06-30
C
h
ri
s
Fields
M
e
rge branch
'
m
a
ster' of github
.
com:bio
p
erl
/
bioperl-run
commit
|
commitdiff
|
tree
2010-06-29
Chris
Fi
e
lds
Merg
e
branch 'master'
i
n
t
o top
i
c
/
sp
e
cies_proxy
commit
|
commitdiff
|
tree
2010-06-22
Chri
s
Fields
fix con
f
lict
commit
|
commitdiff
|
tree
2010-06-10
C
h
ris Fields
B
en
'
s chang
e
s to fix bug with file, along wit
h
c
omment
.
.
.
commit
|
commitdiff
|
tree
2010-06-07
Chri
s
Fields
M
e
r
ge branch 'topic/b
u
g3089'
commit
|
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|
tree
2010-06-06
Chris Fields
M
erge Brian's branch
commit
|
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|
tree
2010-06-06
Chr
i
s Fie
l
ds
add default ma
n
ifest
commit
|
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|
tree
2010-06-04
Chris Fiel
d
s
Mer
g
e
b
ranc
h
'master
'
of github
.
com:biop
e
r
l
/bioperl
.
.
.
commit
|
commitdiff
|
tree
2010-05-25
Chris F
i
elds
Merge br
a
nch 'master' o
f
git
h
ub
.
com:biope
r
l/b
i
operl
.
.
.
commit
|
commitdiff
|
tree
2010-05-20
Chris F
i
e
lds
c
an't
lookup an undefined value a
s
an executa
b
l
e
commit
|
commitdiff
|
tree
2010-05-20
Chr
i
s
Fields
M
e
rge b
r
anch 'mas
t
er' of github
.
com:bioperl/
b
ioperl
.
.
.
commit
|
commitdiff
|
tree
2010-05-20
Chris Fields
Merge branch 'master' of
g
ithub
.
com:bioperl/bi
o
p
e
r
l
.
.
.
commit
|
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|
tree
2010-05-17
Chris F
i
el
d
s
Merge branch 'master' of git@githu
b
.
com
:
b
ioperl/
b
io
p
erl
.
.
.
commit
|
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|
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