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requires not required
2009-01-08
cj
f
ie
l
ds
r
e
quires
n
ot
re
q
uired
commit
|
commitdiff
|
tree
2009-01-08
c
jfields
* co
n
v
ert over to Bi
o
::Root::Test
a
nd update some to
.
.
.
commit
|
commitdiff
|
tree
2009-01-08
cjfields
* convert to Bio::Root::
T
est
commit
|
commitdiff
|
tree
2009-01-08
c
j
fi
e
l
d
s
*
convert to Bio::Root::
T
est
commit
|
commitdiff
|
tree
2009-01-07
cjfields
Ge
t
ting a failed test
using latest EnsE
M
BL
pe
r
l A
P
I
.
.
.
commit
|
commitdiff
|
tree
2009-01-07
cjfields
Catch version, skip test
s
if version isn't suppor
t
ed
.
.
.
commit
|
commitdiff
|
tree
2008-11-14
cjfield
s
[
bug 2644]
commit
|
commitdiff
|
tree
2008-08-22
c
j
fields
*
add_sequences
optio
n
(adds
s
e
q
u
ences to an a
l
ignm
e
nt
.
.
.
commit
|
commitdiff
|
tree
2008-07-30
c
j
f
i
elds
patc
h
ing the
correct Primer3
.
p
m
(not Bio::Too
l
s:
:
Prim
e
r3
.
pm)
commit
|
commitdiff
|
tree
2008-06-19
c
jf
i
elds
b
u
g 2523
commit
|
commitdiff
|
tree
2008-04-15
cj
f
ields
Update to
0
.
8
1
para
m
s
.
Nee
d
to set up
tests
for this
.
.
.
commit
|
commitdiff
|
tree
2008-02-27
cjfiel
d
s
bu
g
2460
commit
|
commitdiff
|
tree
2008-01-15
cjfields
test
commit
|
commitdiff
|
tree
2007-07-16
cjfield
s
b
u
g
2
202
commit
|
commitdiff
|
tree
2007-07-16
cjfields
bug 2299
commit
|
commitdiff
|
tree
2007-07-01
cjfields
bug 2299
commit
|
commitdiff
|
tree
2007-04-02
cjfield
s
wrapper for tRNAscanSE
commit
|
commitdiff
|
tree
2007-03-30
cjf
i
eld
s
small fix: R
N
AMot
i
f can have
e
m
pty
f
iles (will add
.
.
.
commit
|
commitdiff
|
tree
2007-03-29
c
jf
i
elds
fix some funkiness with pipes; may sw
i
t
c
h
to I
P
C
::Run
.
.
.
commit
|
commitdiff
|
tree
2007-03-20
cjfields
All i
n
fer
n
al
p
r
ogram
s
now work; needs some more fine
.
.
.
commit
|
commitdiff
|
tree
2007-03-19
cjfi
e
ld
s
bug 22
4
1
commit
|
commitdiff
|
tree
2007-03-14
cjfield
s
small fi
x
es
commit
|
commitdiff
|
tree
2007-03-13
cjf
i
elds
IP
C
::Run
(required for G
l
immer, Genemark wrappers)
commit
|
commitdiff
|
tree
2007-03-13
cjfields
GeneMark, Glimmer wra
p
pe
r
modules, tests,
and
test
.
.
.
commit
|
commitdiff
|
tree
2007-02-17
cj
f
ields
c
msear
c
h no
w
s wo
r
ks; rest hopefully by Mon
.
commit
|
commitdiff
|
tree
2007-02-16
cjfields
Infernal wrap
p
er (not
f
unctional yet)
commit
|
commitdiff
|
tree
2007-02-07
cjfields
updates
a
n
d
small tweak
s
commit
|
commitdiff
|
tree
2007-02-07
cjfiel
d
s
erpin wr
a
pper (nee
d
s more work
.
.
.
)
commit
|
commitdiff
|
tree
2007-02-05
c
j
fields
A
llow outfile or te
m
p
file (for downstream w
o
rk)
commit
|
commitdiff
|
tree
2007-02-04
cjfields
obscure origin
s
a bit more (he
h
ehe
commit
|
commitdiff
|
tree
2007-02-04
cjfiel
d
s
RNA
M
oti
f
tools wrapper
commit
|
commitdiff
|
tree
2006-10-26
cjfields
C
h
ange to
Test:
:
More
commit
|
commitdiff
|
tree
2006-10-26
c
j
f
ields
Add Test::More (appa
r
ent
l
y wasn't added)
commit
|
commitdiff
|
tree
2006-10-26
cjf
i
elds
Add s
o
me
POD for CLOSE()
commit
|
commitdiff
|
tree
2006-10-26
cjfields
A
d
d
e
d CLOSE() tied filehand
l
e method (bug
2126)
commit
|
commitdiff
|
tree
2006-10-13
cjfields
Revert t
e
sts
;
repeated c
a
ll
s
no
w
w
o
rk (e
x
pected behavio
r
)
commit
|
commitdiff
|
tree
2006-10-10
c
jfields
Fi
x
tests; need t
o
look at Ana
l
y
s
is::soap::results()
commit
|
commitdiff
|
tree
2006-07-11
cjfie
l
ds
Bug 2040
commit
|
commitdiff
|
tree