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requires not required
2009-01-08
cjf
i
e
l
ds
requi
r
es no
t
r
e
quired
commit
|
commitdiff
|
tree
2009-01-08
c
jfields
* conver
t
ov
e
r t
o
B
io::Roo
t
:
:Test and update some to
.
.
.
commit
|
commitdiff
|
tree
2009-01-08
cjfields
*
c
onvert to Bio
:
:R
o
o
t
::Test
commit
|
commitdiff
|
tree
2009-01-08
cjfields
* convert to Bio::Root::Test
commit
|
commitdiff
|
tree
2009-01-07
cjfields
Getti
n
g a
f
ailed t
e
st using latest Ens
E
MBL perl API
.
.
.
commit
|
commitdiff
|
tree
2009-01-07
cjfields
Catch version,
sk
i
p
te
s
ts if versio
n
i
sn't
s
upported
.
.
.
commit
|
commitdiff
|
tree
2008-11-14
cjfields
[bug 264
4
]
commit
|
commitdiff
|
tree
2008-08-22
cjfields
* add_sequences optio
n
(ad
d
s sequences to an alignmen
t
.
.
.
commit
|
commitdiff
|
tree
2008-07-30
cjfields
patch
i
ng the
corr
e
ct
Prime
r
3
.
pm (not
B
i
o::Tools:
:
P
r
imer3
.
pm)
commit
|
commitdiff
|
tree
2008-06-19
c
j
fields
bug 2523
commit
|
commitdiff
|
tree
2008-04-15
cjfields
Up
d
ate to 0
.
81
params
.
Need to set up tests for
this
.
.
.
commit
|
commitdiff
|
tree
2008-02-27
cjfields
bug 2
4
60
commit
|
commitdiff
|
tree
2008-01-15
c
jfields
te
s
t
commit
|
commitdiff
|
tree
2007-07-16
cjfield
s
b
u
g 2202
commit
|
commitdiff
|
tree
2007-07-16
c
j
fields
bug 2299
commit
|
commitdiff
|
tree
2007-07-01
cjf
i
elds
bug 2299
commit
|
commitdiff
|
tree
2007-04-02
cjfi
e
lds
w
r
apper f
o
r tRN
A
sca
n
SE
commit
|
commitdiff
|
tree
2007-03-30
cjfiel
d
s
small
f
ix
:
RNAMotif can have empty files (
w
ill add
.
.
.
commit
|
commitdiff
|
tree
2007-03-29
cjfields
fix some
funkiness with
pipes; may swi
t
ch to IPC::Run
.
.
.
commit
|
commitdiff
|
tree
2007-03-20
cjfields
All in
f
e
r
nal programs now work
;
needs some
m
ore
f
ine
.
.
.
commit
|
commitdiff
|
tree
2007-03-19
cjfields
bug
2
241
commit
|
commitdiff
|
tree
2007-03-14
cjf
i
elds
small fixes
commit
|
commitdiff
|
tree
2007-03-13
cjfield
s
IPC
:
:Run (re
q
uired for Glimmer,
Genemark wrappers)
commit
|
commitdiff
|
tree
2007-03-13
cjfields
GeneMark,
G
limmer
w
rapper mod
u
les, tests, and test
.
.
.
commit
|
commitdiff
|
tree
2007-02-17
cj
f
ields
cms
e
arch nows w
o
rks; rest hop
e
fully by Mon
.
commit
|
commitdiff
|
tree
2007-02-16
cjfields
In
f
ernal wrapper (not
f
u
nc
t
ional yet
)
commit
|
commitdiff
|
tree
2007-02-07
cjfields
u
pdates and small tweaks
commit
|
commitdiff
|
tree
2007-02-07
cjfiel
d
s
e
r
p
i
n wrapper (
n
eeds
m
ore w
o
rk
.
.
.
)
commit
|
commitdiff
|
tree
2007-02-05
cjfie
l
ds
Allow outfile or
tempf
i
le (for downstream wor
k
)
commit
|
commitdiff
|
tree
2007-02-04
cjfields
o
b
s
cure or
i
g
i
n
s a
b
it more (hehehe
commit
|
commitdiff
|
tree
2007-02-04
cjfields
R
NAMotif
to
o
l
s
wrap
p
er
commit
|
commitdiff
|
tree
2006-10-26
cjfie
l
ds
C
hange
t
o
T
e
st::Mor
e
commit
|
commitdiff
|
tree
2006-10-26
cjfields
A
dd Te
s
t
:
:More (app
a
rently
w
asn't added)
commit
|
commitdiff
|
tree
2006-10-26
cjf
i
eld
s
A
d
d some POD
f
or CLOSE()
commit
|
commitdiff
|
tree
2006-10-26
cjfields
Added
C
LOSE(
)
tied
f
i
l
ehandl
e
method (bug 2126)
commit
|
commitdiff
|
tree
2006-10-13
cjfields
Revert test
s
; repe
a
ted calls
now work (expect
e
d behavior)
commit
|
commitdiff
|
tree
2006-10-10
c
j
fields
Fix t
e
sts; need to
l
o
o
k
at Analysis::soa
p
:
:
results()
commit
|
commitdiff
|
tree
2006-07-11
cjfields
Bug
2040
commit
|
commitdiff
|
tree